BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1076 (PAB1076) DE:Hypothetical protein
         (256 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75013 hypothetical protein PAB1076 - Pyrococcus abyssi (st...   518  e-146
pir||F71138 hypothetical protein PH0321 - Pyrococcus horikoshii ...   333  2e-90

>pir||A75013 hypothetical protein PAB1076 - Pyrococcus abyssi (strain Orsay)
           >gi|5459057|emb|CAB50543.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 256
           
 Score =  518 bits (1319), Expect = e-146
 Identities = 256/256 (100%), Positives = 256/256 (100%)

Query: 1   METVSWGIKELDKEIGEIKKYSLILFHQEDSLSRGIDVLYYILAKKLKEDELIGYFNISY 60
           METVSWGIKELDKEIGEIKKYSLILFHQEDSLSRGIDVLYYILAKKLKEDELIGYFNISY
Sbjct: 1   METVSWGIKELDKEIGEIKKYSLILFHQEDSLSRGIDVLYYILAKKLKEDELIGYFNISY 60

Query: 61  PLPLVLKVLSRFGVDPIKALESRNLAIIDTFGSFYGIRTNIKGVYMLEGMLSSETLPAKY 120
           PLPLVLKVLSRFGVDPIKALESRNLAIIDTFGSFYGIRTNIKGVYMLEGMLSSETLPAKY
Sbjct: 61  PLPLVLKVLSRFGVDPIKALESRNLAIIDTFGSFYGIRTNIKGVYMLEGMLSSETLPAKY 120

Query: 121 ARVVELHKEDWAKFGMFEGRNIFGFAIAISSYLELFGRVDEVLRYIELSSEIRHVHPAYR 180
           ARVVELHKEDWAKFGMFEGRNIFGFAIAISSYLELFGRVDEVLRYIELSSEIRHVHPAYR
Sbjct: 121 ARVVELHKEDWAKFGMFEGRNIFGFAIAISSYLELFGRVDEVLRYIELSSEIRHVHPAYR 180

Query: 181 KYPRGTNFWLWIGKGNEEVFGSVFRRADYVIRTRSHLGDEGIKRELIILKTPGISEDIVK 240
           KYPRGTNFWLWIGKGNEEVFGSVFRRADYVIRTRSHLGDEGIKRELIILKTPGISEDIVK
Sbjct: 181 KYPRGTNFWLWIGKGNEEVFGSVFRRADYVIRTRSHLGDEGIKRELIILKTPGISEDIVK 240

Query: 241 FEYEFKDTRPVLKRVL 256
           FEYEFKDTRPVLKRVL
Sbjct: 241 FEYEFKDTRPVLKRVL 256


>pir||F71138 hypothetical protein PH0321 - Pyrococcus horikoshii
           >gi|3256712|dbj|BAA29395.1| (AP000002) 253aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 253
           
 Score =  333 bits (844), Expect = 2e-90
 Identities = 155/252 (61%), Positives = 205/252 (80%), Gaps = 1/252 (0%)

Query: 4   VSWGIKELDKEIGEIKKYSLILFHQEDSLSRGIDVLYYILAKKLKEDELIGYFNISYPLP 63
           +SW I+ELD+EIG+IKK+SLIL H+ED+ SRG D+L+YIL++KLK D L+G F+ISYPL 
Sbjct: 2   ISWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQ 61

Query: 64  LVLKVLSRFGVDPIKALESRNLAIIDTFGSFYGIRTNIKGVYMLEGMLSSETLPAKYARV 123
           L++++LSRFGVD IK LE+  LAI+DTFGSF+GI+  + GV+ LEGMLSSETLP KYA+ 
Sbjct: 62  LIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMPGVWYLEGMLSSETLPIKYAKA 121

Query: 124 VELHKEDWAKFGMFEGRNIFGFAIAISSYLELFGRVDEVLRYIELSSEIRHVHPAYRKYP 183
           VE HK+ W    +FEGR ++GFAI++S YLE+F   +E LRY+E S+E+R+ HPAY+KYP
Sbjct: 122 VEDHKKVWMDLNLFEGRELYGFAISMSGYLEVF-TPEETLRYLETSAEVRYGHPAYKKYP 180

Query: 184 RGTNFWLWIGKGNEEVFGSVFRRADYVIRTRSHLGDEGIKRELIILKTPGISEDIVKFEY 243
           RGTNFWLW G  ++ V  SV+RRADYV++TRS LG+ GIKREL+++KTP   E++V+FEY
Sbjct: 181 RGTNFWLWEGVKDKRVLLSVYRRADYVLKTRSSLGENGIKRELLVIKTPKPIEELVRFEY 240

Query: 244 EFKDTRPVLKRV 255
           EFK   P L+RV
Sbjct: 241 EFKGNEPKLRRV 252


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.144    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94834009
Number of Sequences: 2977
Number of extensions: 3944387
Number of successful extensions: 9282
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9279
Number of HSP's gapped (non-prelim): 2
length of query: 256
length of database: 189,106,746
effective HSP length: 52
effective length of query: 204
effective length of database: 157,985,422
effective search space: 32229026088
effective search space used: 32229026088
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)