BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1079 (PAB1079) DE:Hypothetical protein
         (101 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75013 hypothetical protein PAB1079 - Pyrococcus abyssi (st...   220  5e-57
pir||G71128 hypothetical protein PH0796 - Pyrococcus horikoshii ...    69  2e-11
pir||H71088 hypothetical protein PH0973 - Pyrococcus horikoshii ...    69  2e-11

>pir||D75013 hypothetical protein PAB1079 - Pyrococcus abyssi (strain Orsay)
           >gi|5459060|emb|CAB50546.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 101
           
 Score =  220 bits (554), Expect = 5e-57
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSKFGLWWIGWNGSDYESRMTVVSRKATVEDFKKRGFDKIVILSGEGRGIKYSGSGYENG 60
           MSKFGLWWIGWNGSDYESRMTVVSRKATVEDFKKRGFDKIVILSGEGRGIKYSGSGYENG
Sbjct: 1   MSKFGLWWIGWNGSDYESRMTVVSRKATVEDFKKRGFDKIVILSGEGRGIKYSGSGYENG 60

Query: 61  YMGGLHFAQWVLSEILGNVEYYYFSTDFKVMDMVRERCLGW 101
           YMGGLHFAQWVLSEILGNVEYYYFSTDFKVMDMVRERCLGW
Sbjct: 61  YMGGLHFAQWVLSEILGNVEYYYFSTDFKVMDMVRERCLGW 101


>pir||G71128 hypothetical protein PH0796 - Pyrococcus horikoshii
          >gi|3257206|dbj|BAA29889.1| (AP000003) 338aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 338
          
 Score = 68.7 bits (165), Expect = 2e-11
 Identities = 37/85 (43%), Positives = 51/85 (59%), Gaps = 12/85 (14%)

Query: 5  GLWWIGWNGS--DYESRMTVVSRKA-----TVEDFKKRGFDKIVILSGEGRGIKYSGSGY 57
          GLWWI WN +   YESRMT+  R        V+ FK+RGFD++V L  EGRGI Y+G   
Sbjct: 8  GLWWIRWNDTLGGYESRMTLGGRSPGTYYDEVQLFKERGFDRVVFLGEEGRGINYTG--- 64

Query: 58 ENGYMGGLHFAQWVLSEILGNVEYY 82
           NG+    + A W+ + I  +++YY
Sbjct: 65 -NGFADARYLALWIRTHIT-SIDYY 87


>pir||H71088 hypothetical protein PH0973 - Pyrococcus horikoshii
          >gi|3257387|dbj|BAA30070.1| (AP000004) 358aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 358
          
 Score = 68.7 bits (165), Expect = 2e-11
 Identities = 37/85 (43%), Positives = 51/85 (59%), Gaps = 12/85 (14%)

Query: 5  GLWWIGWNGS--DYESRMTVVSRKA-----TVEDFKKRGFDKIVILSGEGRGIKYSGSGY 57
          GLWWI WN +   YESRMT+  R        V+ FK+RGFD++V L  EGRGI Y+G   
Sbjct: 8  GLWWIRWNDTLGGYESRMTLGGRSPGTYYDEVQLFKERGFDRVVFLGEEGRGINYTG--- 64

Query: 58 ENGYMGGLHFAQWVLSEILGNVEYY 82
           NG+    + A W+ + I  +++YY
Sbjct: 65 -NGFADARYLALWIRTHIT-SIDYY 87


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.462 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43077567
Number of Sequences: 2977
Number of extensions: 1720751
Number of successful extensions: 9087
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9082
Number of HSP's gapped (non-prelim): 5
length of query: 101
length of database: 189,106,746
effective HSP length: 45
effective length of query: 56
effective length of database: 162,174,831
effective search space: 9081790536
effective search space used: 9081790536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 159 (66.3 bits)