BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1080 (PAB1080) DE:Hypothetical protein
         (179 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75013 hypothetical protein PAB1080 - Pyrococcus abyssi (st...   371  e-102
pir||H71128 hypothetical protein PH0797 - Pyrococcus horikoshii ...   198  3e-50

>pir||E75013 hypothetical protein PAB1080 - Pyrococcus abyssi (strain Orsay)
           >gi|5459061|emb|CAB50547.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 179
           
 Score =  371 bits (943), Expect = e-102
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MAVYSTNVPGVLYEVRYSVISNGTVALIPLSAYQYDFLYYPNNSLARFSEWHYVFYYNGS 60
           MAVYSTNVPGVLYEVRYSVISNGTVALIPLSAYQYDFLYYPNNSLARFSEWHYVFYYNGS
Sbjct: 1   MAVYSTNVPGVLYEVRYSVISNGTVALIPLSAYQYDFLYYPNNSLARFSEWHYVFYYNGS 60

Query: 61  ELYILNFTYVLARPPRIAFVNGSWYLNITTYTYSGIDSTIYRLNLRTFSIVPVKISWFKL 120
           ELYILNFTYVLARPPRIAFVNGSWYLNITTYTYSGIDSTIYRLNLRTFSIVPVKISWFKL
Sbjct: 61  ELYILNFTYVLARPPRIAFVNGSWYLNITTYTYSGIDSTIYRLNLRTFSIVPVKISWFKL 120

Query: 121 LRENHVVSELNGWRIIIPKDFRLLDSNIPTADVVIANTEENARLYWDRVILVNSSKFPI 179
           LRENHVVSELNGWRIIIPKDFRLLDSNIPTADVVIANTEENARLYWDRVILVNSSKFPI
Sbjct: 121 LRENHVVSELNGWRIIIPKDFRLLDSNIPTADVVIANTEENARLYWDRVILVNSSKFPI 179


>pir||H71128 hypothetical protein PH0797 - Pyrococcus horikoshii
           >gi|3257207|dbj|BAA29890.1| (AP000003) 554aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 554
           
 Score =  198 bits (499), Expect = 3e-50
 Identities = 96/183 (52%), Positives = 133/183 (72%), Gaps = 7/183 (3%)

Query: 2   AVYSTNVPGVLYEVRYSVISNGTVALIPLSAYQYDFLYYPNNSLARFSEWHYVFYYNGSE 61
           A+++   PGV+YEV+YSV+SNGTV LIPLS +QYDFL  PN+S+A+F EW+Y+ YY+GS+
Sbjct: 22  AIHTIKAPGVIYEVKYSVVSNGTVVLIPLSVFQYDFLCCPNSSIAKFGEWYYLLYYDGSQ 81

Query: 62  LYILNFTYVLARPPRIAFVNGSWYLNITTYTYS--GIDSTIYRLNLRTFSIVPVKISWFK 119
           LY+LNFTY LA P R+AFVNGSWY+ I+TY  S   I S++Y LNL  FS   V  SW +
Sbjct: 82  LYLLNFTYALAHPLRVAFVNGSWYVEISTYKDSCDEITSSVYSLNLANFSFKKVNTSWSR 141

Query: 120 LLRENHVVSELNGWRIIIPKDFRLLDSNIP-TADVVIANTEENARLYWD--RVILVNSSK 176
           L+  +  V+E+NGW+I+IP      +S+ P T D+++ N++ENA L  +  RV+L  S K
Sbjct: 142 LVWNSQSVNEINGWKIVIPN--LSTNSSFPTTVDIIVINSKENANLLNNSKRVVLTTSPK 199

Query: 177 FPI 179
           FP+
Sbjct: 200 FPV 202


 Score = 82.7 bits (201), Expect = 3e-15
 Identities = 51/138 (36%), Positives = 74/138 (52%), Gaps = 17/138 (12%)

Query: 16  RYSVISNGTVALI-----PLSAYQYDFLYYPNNSLARFSE------WHYVFYYNGSELYI 64
           +YS++S+G  A+I      LS Y    L     + +  SE        Y+ Y+N S+LY+
Sbjct: 271 QYSIVSSGKDAIIYLSISVLSPYCPPHLVASGYNCSNTSEVTIMGGGEYLLYFNDSKLYL 330

Query: 65  LNF----TYVLARPPRIAFVNGSWYLNITTYTYSGID--STIYRLNLRTFSIVPVKISWF 118
           LNF      V+       FVNGSWYLNIT +  S +     IY+ N R F I PV ++W 
Sbjct: 331 LNFLKPYNTVIESYNGAVFVNGSWYLNITFFNRSNLRFVDKIYQFNSRDFCIKPVNVNWS 390

Query: 119 KLLRENHVVSELNGWRII 136
           +LL E+  ++ +NGWRI+
Sbjct: 391 RLLEESKNINTINGWRIV 408


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.140    0.433 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70499488
Number of Sequences: 2977
Number of extensions: 2978592
Number of successful extensions: 5493
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5486
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 189,106,746
effective HSP length: 50
effective length of query: 129
effective length of database: 159,182,396
effective search space: 20534529084
effective search space used: 20534529084
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 162 (67.5 bits)