BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1084 1631770 1632252 161 !not a gene!
         (161 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71457 hypothetical protein PH0315 - Pyrococcus horikoshii ...   222  2e-57

>pir||E71457 hypothetical protein PH0315 - Pyrococcus horikoshii
           >gi|3256705|dbj|BAA29388.1| (AP000001) 164aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 164
           
 Score =  222 bits (560), Expect = 2e-57
 Identities = 112/161 (69%), Positives = 120/161 (73%)

Query: 1   MCSNHFLASSSPLIASCHLVIISGVMLESTQQSRTSVTGSISAPQTGHFXXXXXXXXXXX 60
           +CSNHFLASSSP IASCH VI+SGV+LESTQQS TSVTGSISAP TGH            
Sbjct: 4   LCSNHFLASSSPFIASCHFVIMSGVILESTQQSSTSVTGSISAPHTGHLSTGGLSNLGST 63

Query: 61  XXXXXXAGIMCPFLQTQNGNGVPKTLCLLITXXXXXXXXXXXXXRNMSSGYQLISLATLT 120
                 AGI+ PFL TQNG GVPKTLCLLIT             RN+SSGYQ ISLATL 
Sbjct: 64  GRSSSLAGIIWPFLHTQNGKGVPKTLCLLITQSQSMLSAQSLSLRNISSGYQFISLATLI 123

Query: 121 ISSVKSFTLMNHCFLGSNSIGAIQELLSVCLRTLCFIFSFL 161
           ISS++SFTLMNHCFLG +SIGAIQELLSVCLRTLCFIFSFL
Sbjct: 124 ISSMRSFTLMNHCFLGKSSIGAIQELLSVCLRTLCFIFSFL 164


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.134    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41131883
Number of Sequences: 2977
Number of extensions: 1040423
Number of successful extensions: 1986
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1985
Number of HSP's gapped (non-prelim): 1
length of query: 161
length of database: 189,106,746
effective HSP length: 54
effective length of query: 107
effective length of database: 156,788,448
effective search space: 16776363936
effective search space used: 16776363936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)