BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1087 (PAB1087) DE:DTDP-4-KETO-L-RHAMNOSE REDUCTASE related
(176 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75015 dtdp-4-keto-l-rhamnose reductase related PAB1087 - P... 350 5e-96
pir||A71457 hypothetical protein PH0311 - Pyrococcus horikoshii ... 300 5e-81
emb|CAC11346.1| (AL445063) conserved hypothetical protein [Therm... 117 9e-26
pir||F72369 conserved hypothetical protein - Thermotoga maritima... 114 7e-25
pir||H69841 conserved hypothetical protein yitW - Bacillus subti... 99 4e-20
dbj|BAA21508.1| (AB000631) unnamed protein product [Streptococcu... 95 5e-19
dbj|BAB05892.1| (AP001514) unknown conserved protein [Bacillus h... 94 9e-19
gb|AAK40913.1| Conserved hypothetical protein [Sulfolobus solfat... 94 9e-19
gb|AAB63027.1| (U82227) unknown [Sulfolobus solfataricus] >gi|60... 94 9e-19
emb|CAA72253.1| (Y11463) ORF3 [Streptococcus pneumoniae] 93 2e-18
pir||E72500 hypothetical protein APE1979 - Aeropyrum pernix (str... 90 1e-17
pir||C75306 conserved hypothetical protein - Deinococcus radiodu... 87 1e-16
gb|AAK42053.1| Conserved hypothetical protein [Sulfolobus solfat... 83 1e-15
pir||B82612 hypothetical protein XF2000 [imported] - Xylella fas... 77 1e-13
pir||E70872 hypothetical protein Rv1466 - Mycobacterium tubercul... 68 5e-11
>pir||B75015 dtdp-4-keto-l-rhamnose reductase related PAB1087 - Pyrococcus
abyssi (strain Orsay) >gi|5459074|emb|CAB50560.1|
(AJ248288) DTDP-4-KETO-L-RHAMNOSE REDUCTASE related
[Pyrococcus abyssi]
Length = 176
Score = 350 bits (889), Expect = 5e-96
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60
MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK
Sbjct: 1 MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60
Query: 61 QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120
QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM
Sbjct: 61 QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120
Query: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI
Sbjct: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
>pir||A71457 hypothetical protein PH0311 - Pyrococcus horikoshii
>gi|3256701|dbj|BAA29384.1| (AP000001) 176aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 176
Score = 300 bits (761), Expect = 5e-81
Identities = 142/176 (80%), Positives = 161/176 (90%)
Query: 1 MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60
MV K D+ +I++VTGK EI++ L ++NG VK++FKEKIDDATLLK YN+I+E++G+K
Sbjct: 1 MVMKEDIATIIKDVTGKDFEEIVDELSIDNGIVKIVFKEKIDDATLLKAYNRIRELEGVK 60
Query: 61 QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120
QVEIGFKREVKE E V LTED ILEKLKEVIDPE+G+DVVNLGLIYELKVNPDNTVYIKM
Sbjct: 61 QVEIGFKREVKEGEKVKLTEDEILEKLKEVIDPEVGVDVVNLGLIYELKVNPDNTVYIKM 120
Query: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKR+LGM+
Sbjct: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRKLGML 176
>emb|CAC11346.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 100
Score = 117 bits (290), Expect = 9e-26
Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Query: 78 LTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAV 137
+T++ +LE LK V DPEIG DVVNLGL+Y++++N N VYIKMTMT P CP+T WIL
Sbjct: 2 VTKEEVLEALKAVSDPEIGYDVVNLGLVYDIQIN-GNRVYIKMTMTAPTCPVTPWILSEA 60
Query: 138 EEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
+ V E+PGV+ ++EL +DPPW P MS+EAK+ L +
Sbjct: 61 QRVVEELPGVEACDIELVWDPPWNPKMMSDEAKQALNI 98
>pir||F72369 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980998|gb|AAD35572.1|AE001726_6 (AE001726)
conserved hypothetical protein [Thermotoga maritima]
Length = 104
Score = 114 bits (282), Expect = 7e-25
Identities = 52/98 (53%), Positives = 73/98 (74%)
Query: 78 LTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAV 137
+T++ +L LK VID E+G+DVV+LGL+Y+++++ N V + MTMTTP CPL IL
Sbjct: 7 VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDA 66
Query: 138 EEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
EE + +I GV +VEVELTFDPPWTP+RMS E + + G+
Sbjct: 67 EEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFGV 104
>pir||H69841 conserved hypothetical protein yitW - Bacillus subtilis
>gi|1620928|emb|CAB01838.1| (Z79580) putative orf
[Bacillus subtilis] >gi|2145417|emb|CAA70634.1| (Y09476)
YitW [Bacillus subtilis] >gi|2633452|emb|CAB12956.1|
(Z99109) similar to hypothetical proteins [Bacillus
subtilis]
Length = 102
Score = 98.7 bits (242), Expect = 4e-20
Identities = 42/96 (43%), Positives = 70/96 (72%)
Query: 80 EDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEE 139
++ I+ L++V+DPE+G+D+VNLGL+Y++ ++ D +I MT+T+ GCPL I+ V++
Sbjct: 6 KENIMGALEQVVDPELGVDIVNLGLVYDVDMDEDGLTHITMTLTSMGCPLAPIIVDEVKK 65
Query: 140 KVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
+ ++P VKD EV + ++PPWT D+MS AK LG+
Sbjct: 66 ALADLPEVKDTEVHIVWNPPWTRDKMSRYAKIALGI 101
>dbj|BAA21508.1| (AB000631) unnamed protein product [Streptococcus mutans]
Length = 111
Score = 94.8 bits (232), Expect = 5e-19
Identities = 44/102 (43%), Positives = 66/102 (64%)
Query: 74 ENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWI 133
E + +D ILE L+ VIDPE+GID+VNLGLIY+++ I MT+TT GCPL +
Sbjct: 9 EEIAKIKDRILEALEMVIDPELGIDIVNLGLIYDIRFEDSGRTEIDMTLTTMGCPLADLL 68
Query: 134 LRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
+ + + ++P V D++V+L + P WT D+MS A+ LG+
Sbjct: 69 TDQIHDALKDVPEVLDIDVKLVWSPAWTVDKMSRYARIALGI 110
>dbj|BAB05892.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 111
Score = 94.0 bits (230), Expect = 9e-19
Identities = 45/106 (42%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 73 EENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLW 132
E+ + T+D ++ +L+ VIDPE+GID+VNLGL+Y++ V+ + V + MT+T+ GCPL
Sbjct: 4 EQEIQETKDRVMAQLENVIDPELGIDIVNLGLVYDILVDAEWNVTVVMTLTSMGCPLAGV 63
Query: 133 ILRAVEEKVLEIPGVK---DVEVELTFDPPWTPDRMSEEAKRRLGM 175
I V++ + E+ +K DV+V + ++PPWT D+MS AK LG+
Sbjct: 64 IHDQVKQTLSELQELKEIGDVDVNIVWNPPWTKDKMSRYAKIALGV 109
>gb|AAK40913.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 132
Score = 94.0 bits (230), Expect = 9e-19
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 83 ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
I+E LK+V DPEI +D+VNLGLIY+LK+N D VY+++ +T PGCP+ ++ VE+ +
Sbjct: 17 IMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPGCPVVDDLIYTVEQVIK 76
Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKRR 172
E K VEV++ D WTP +M+ E + +
Sbjct: 77 ESVPAKSVEVDIDLDTQWTPLKMTAEGREK 106
>gb|AAB63027.1| (U82227) unknown [Sulfolobus solfataricus]
>gi|6015872|emb|CAB57699.1| (Y18930) hypothetical
protein [Sulfolobus solfataricus]
Length = 132
Score = 94.0 bits (230), Expect = 9e-19
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 83 ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
I+E LK+V DPEI +D+VNLGLIY+LK+N D VY+++ +T PGCP+ ++ VE+ +
Sbjct: 17 IMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPGCPVVDDLIYTVEQVIK 76
Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKRR 172
E K VEV++ D WTP +M+ E + +
Sbjct: 77 ESVPAKSVEVDIDLDTQWTPLKMTAEGREK 106
>emb|CAA72253.1| (Y11463) ORF3 [Streptococcus pneumoniae]
Length = 109
Score = 93.2 bits (228), Expect = 2e-18
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 73 EENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDN-TVYIKMTMTTPGCPLTL 131
EE + + IL L+EVIDPE+GID+VNLGLIYE++ + D I MT+TT GCPL
Sbjct: 5 EEQIENIKTRILTALEEVIDPELGIDIVNLGLIYEIRFDGDTGQTEIDMTLTTMGCPLAD 64
Query: 132 WILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
+ + + ++E+P V D EV+L + P WT ++MS A+ LG+
Sbjct: 65 LLTDQIYDAMIEVPEVTDTEVKLVWYPAWTVEKMSRYARIALGI 108
>pir||E72500 hypothetical protein APE1979 - Aeropyrum pernix (strain K1)
>gi|5105677|dbj|BAA80989.1| (AP000063) 141aa long
hypothetical protein [Aeropyrum pernix]
Length = 141
Score = 90.1 bits (220), Expect = 1e-17
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
Query: 81 DMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNT---VYIKMTMTTPGCPLTLWILRAV 137
D I+E LKEV DPEI ++V +LGLIYE++V + +KM++T GCP+++ + V
Sbjct: 23 DRIVEALKEVYDPEIPVNVYDLGLIYEVRVEGPREKPRIKVKMSLTAIGCPVSVALPAYV 82
Query: 138 EEKVLE-IPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
E+ + E +P +DVEVE+ FDPPWTP+R++ E + L I
Sbjct: 83 EDAIREAVPEAEDVEVEVVFDPPWTPERVTPEGRELLKTI 122
>pir||C75306 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459966|gb|AAF11715.1|AE002050_1 (AE002050)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 149
Score = 87.0 bits (212), Expect = 1e-16
Identities = 44/97 (45%), Positives = 62/97 (63%)
Query: 79 TEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVE 138
+E +LE LK V DPEI ++VV+LGLIY + + D V I MT+T+ GCP+ I E
Sbjct: 48 SEAQVLEALKVVKDPEIPVNVVDLGLIYGVDILEDGNVDITMTLTSVGCPVQDLIRADAE 107
Query: 139 EKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
V + GV+ V VE + PPW PD+M+E+ KR++ M
Sbjct: 108 MAVGRLDGVEGVNVEFVWTPPWGPDKMTEDGKRQMRM 144
>gb|AAK42053.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 129
Score = 83.5 bits (203), Expect = 1e-15
Identities = 39/89 (43%), Positives = 59/89 (65%)
Query: 83 ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
I++ L EV DPEI ID+VNLGLIY+L ++ + VY+++ TTP CP+T + VE+ V
Sbjct: 13 IIQGLHEVYDPEIPIDIVNLGLIYQLDISDEGDVYVRIGATTPACPVTEDLEYTVEQVVK 72
Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKR 171
E K ++VEL + WTP M++E ++
Sbjct: 73 ESVQAKSIKVELDLETEWTPLMMTDEGRK 101
>pir||B82612 hypothetical protein XF2000 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107113|gb|AAF84802.1|AE004019_8
(AE004019) hypothetical protein [Xylella fastidiosa]
Length = 216
Score = 76.9 bits (186), Expect = 1e-13
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 80 EDMILEKLKEVIDPEIGIDVVNLGLIYELKV----NPDNTVYIKMTMTTPGCPLTLWILR 135
E ++ ++L+ DPEI ++V+LGL+YE + + TV +KMT+T PGC + ++
Sbjct: 116 EQLVWQQLRACFDPEIPFNIVDLGLVYEAMLGHRDDGQRTVQVKMTLTAPGCGMGGILVD 175
Query: 136 AVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
V K+ IP V VEL FDPPW MSE A+ GM
Sbjct: 176 DVRSKLELIPTVVAANVELVFDPPWGRHMMSESARLETGM 215
>pir||E70872 hypothetical protein Rv1466 - Mycobacterium tuberculosis (strain
H37RV) >gi|3261499|emb|CAA16008.1| (AL021184)
hypothetical protein Rv1466 [Mycobacterium tuberculosis]
Length = 115
Score = 68.3 bits (164), Expect = 5e-11
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 85 EKLKEVIDPEIGIDVVNLGLIYELKV---NPDNTVYIKMTMTTPGCPLTLWILRAVEEKV 141
E +++V+DPE+GI+VV+LGL+Y L V + I MT+T+ CPLT I +
Sbjct: 17 EAMRDVVDPELGINVVDLGLVYGLDVQDGDEGTVALIDMTLTSAACPLTDVIEDQSRSAL 76
Query: 142 LEIPGVKDVEVELTFDPPWTPDRMSEEAKRRL 173
+ V D+ + ++PPW PD+++E+ + +L
Sbjct: 77 VGSGLVDDIRINWVWNPPWGPDKITEDGREQL 108
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.137 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65327561
Number of Sequences: 2977
Number of extensions: 2787242
Number of successful extensions: 7876
Number of sequences better than 1.0e-10: 15
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7854
Number of HSP's gapped (non-prelim): 15
length of query: 176
length of database: 189,106,746
effective HSP length: 57
effective length of query: 119
effective length of database: 154,992,987
effective search space: 18444165453
effective search space used: 18444165453
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)