BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1087 (PAB1087) DE:DTDP-4-KETO-L-RHAMNOSE REDUCTASE related
         (176 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75015 dtdp-4-keto-l-rhamnose reductase related PAB1087 - P...   350  5e-96
pir||A71457 hypothetical protein PH0311 - Pyrococcus horikoshii ...   300  5e-81
emb|CAC11346.1| (AL445063) conserved hypothetical protein [Therm...   117  9e-26
pir||F72369 conserved hypothetical protein - Thermotoga maritima...   114  7e-25
pir||H69841 conserved hypothetical protein yitW - Bacillus subti...    99  4e-20
dbj|BAA21508.1| (AB000631) unnamed protein product [Streptococcu...    95  5e-19
dbj|BAB05892.1| (AP001514) unknown conserved protein [Bacillus h...    94  9e-19
gb|AAK40913.1| Conserved hypothetical protein [Sulfolobus solfat...    94  9e-19
gb|AAB63027.1| (U82227) unknown [Sulfolobus solfataricus] >gi|60...    94  9e-19
emb|CAA72253.1| (Y11463) ORF3 [Streptococcus pneumoniae]               93  2e-18
pir||E72500 hypothetical protein APE1979 - Aeropyrum pernix (str...    90  1e-17
pir||C75306 conserved hypothetical protein - Deinococcus radiodu...    87  1e-16
gb|AAK42053.1| Conserved hypothetical protein [Sulfolobus solfat...    83  1e-15
pir||B82612 hypothetical protein XF2000 [imported] - Xylella fas...    77  1e-13
pir||E70872 hypothetical protein Rv1466 - Mycobacterium tubercul...    68  5e-11

>pir||B75015 dtdp-4-keto-l-rhamnose reductase related PAB1087 - Pyrococcus
           abyssi (strain Orsay) >gi|5459074|emb|CAB50560.1|
           (AJ248288) DTDP-4-KETO-L-RHAMNOSE REDUCTASE related
           [Pyrococcus abyssi]
           Length = 176
           
 Score =  350 bits (889), Expect = 5e-96
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60
           MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK
Sbjct: 1   MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60

Query: 61  QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120
           QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM
Sbjct: 61  QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120

Query: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
           TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI
Sbjct: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176


>pir||A71457 hypothetical protein PH0311 - Pyrococcus horikoshii
           >gi|3256701|dbj|BAA29384.1| (AP000001) 176aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 176
           
 Score =  300 bits (761), Expect = 5e-81
 Identities = 142/176 (80%), Positives = 161/176 (90%)

Query: 1   MVTKSDVEKVIEEVTGKKANEIIENLELENGTVKLIFKEKIDDATLLKVYNKIKEIKGIK 60
           MV K D+  +I++VTGK   EI++ L ++NG VK++FKEKIDDATLLK YN+I+E++G+K
Sbjct: 1   MVMKEDIATIIKDVTGKDFEEIVDELSIDNGIVKIVFKEKIDDATLLKAYNRIRELEGVK 60

Query: 61  QVEIGFKREVKEEENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKM 120
           QVEIGFKREVKE E V LTED ILEKLKEVIDPE+G+DVVNLGLIYELKVNPDNTVYIKM
Sbjct: 61  QVEIGFKREVKEGEKVKLTEDEILEKLKEVIDPEVGVDVVNLGLIYELKVNPDNTVYIKM 120

Query: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
           TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKR+LGM+
Sbjct: 121 TMTTPGCPLTLWILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRKLGML 176


>emb|CAC11346.1| (AL445063) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 100
           
 Score =  117 bits (290), Expect = 9e-26
 Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 78  LTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAV 137
           +T++ +LE LK V DPEIG DVVNLGL+Y++++N  N VYIKMTMT P CP+T WIL   
Sbjct: 2   VTKEEVLEALKAVSDPEIGYDVVNLGLVYDIQIN-GNRVYIKMTMTAPTCPVTPWILSEA 60

Query: 138 EEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
           +  V E+PGV+  ++EL +DPPW P  MS+EAK+ L +
Sbjct: 61  QRVVEELPGVEACDIELVWDPPWNPKMMSDEAKQALNI 98


>pir||F72369 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4980998|gb|AAD35572.1|AE001726_6 (AE001726)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 104
           
 Score =  114 bits (282), Expect = 7e-25
 Identities = 52/98 (53%), Positives = 73/98 (74%)

Query: 78  LTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAV 137
           +T++ +L  LK VID E+G+DVV+LGL+Y+++++  N V + MTMTTP CPL   IL   
Sbjct: 7   VTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDA 66

Query: 138 EEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
           EE + +I GV +VEVELTFDPPWTP+RMS E + + G+
Sbjct: 67  EEAIKKIEGVNNVEVELTFDPPWTPERMSPELREKFGV 104


>pir||H69841 conserved hypothetical protein yitW - Bacillus subtilis
           >gi|1620928|emb|CAB01838.1| (Z79580) putative orf
           [Bacillus subtilis] >gi|2145417|emb|CAA70634.1| (Y09476)
           YitW [Bacillus subtilis] >gi|2633452|emb|CAB12956.1|
           (Z99109) similar to hypothetical proteins [Bacillus
           subtilis]
           Length = 102
           
 Score = 98.7 bits (242), Expect = 4e-20
 Identities = 42/96 (43%), Positives = 70/96 (72%)

Query: 80  EDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEE 139
           ++ I+  L++V+DPE+G+D+VNLGL+Y++ ++ D   +I MT+T+ GCPL   I+  V++
Sbjct: 6   KENIMGALEQVVDPELGVDIVNLGLVYDVDMDEDGLTHITMTLTSMGCPLAPIIVDEVKK 65

Query: 140 KVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
            + ++P VKD EV + ++PPWT D+MS  AK  LG+
Sbjct: 66  ALADLPEVKDTEVHIVWNPPWTRDKMSRYAKIALGI 101


>dbj|BAA21508.1| (AB000631) unnamed protein product [Streptococcus mutans]
           Length = 111
           
 Score = 94.8 bits (232), Expect = 5e-19
 Identities = 44/102 (43%), Positives = 66/102 (64%)

Query: 74  ENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWI 133
           E +   +D ILE L+ VIDPE+GID+VNLGLIY+++        I MT+TT GCPL   +
Sbjct: 9   EEIAKIKDRILEALEMVIDPELGIDIVNLGLIYDIRFEDSGRTEIDMTLTTMGCPLADLL 68

Query: 134 LRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
              + + + ++P V D++V+L + P WT D+MS  A+  LG+
Sbjct: 69  TDQIHDALKDVPEVLDIDVKLVWSPAWTVDKMSRYARIALGI 110


>dbj|BAB05892.1| (AP001514) unknown conserved protein [Bacillus halodurans]
           Length = 111
           
 Score = 94.0 bits (230), Expect = 9e-19
 Identities = 45/106 (42%), Positives = 73/106 (68%), Gaps = 3/106 (2%)

Query: 73  EENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLW 132
           E+ +  T+D ++ +L+ VIDPE+GID+VNLGL+Y++ V+ +  V + MT+T+ GCPL   
Sbjct: 4   EQEIQETKDRVMAQLENVIDPELGIDIVNLGLVYDILVDAEWNVTVVMTLTSMGCPLAGV 63

Query: 133 ILRAVEEKVLEIPGVK---DVEVELTFDPPWTPDRMSEEAKRRLGM 175
           I   V++ + E+  +K   DV+V + ++PPWT D+MS  AK  LG+
Sbjct: 64  IHDQVKQTLSELQELKEIGDVDVNIVWNPPWTKDKMSRYAKIALGV 109


>gb|AAK40913.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 132
           
 Score = 94.0 bits (230), Expect = 9e-19
 Identities = 41/90 (45%), Positives = 62/90 (68%)

Query: 83  ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
           I+E LK+V DPEI +D+VNLGLIY+LK+N D  VY+++ +T PGCP+   ++  VE+ + 
Sbjct: 17  IMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPGCPVVDDLIYTVEQVIK 76

Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKRR 172
           E    K VEV++  D  WTP +M+ E + +
Sbjct: 77  ESVPAKSVEVDIDLDTQWTPLKMTAEGREK 106


>gb|AAB63027.1| (U82227) unknown [Sulfolobus solfataricus]
           >gi|6015872|emb|CAB57699.1| (Y18930) hypothetical
           protein [Sulfolobus solfataricus]
           Length = 132
           
 Score = 94.0 bits (230), Expect = 9e-19
 Identities = 41/90 (45%), Positives = 62/90 (68%)

Query: 83  ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
           I+E LK+V DPEI +D+VNLGLIY+LK+N D  VY+++ +T PGCP+   ++  VE+ + 
Sbjct: 17  IMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPGCPVVDDLIYTVEQVIK 76

Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKRR 172
           E    K VEV++  D  WTP +M+ E + +
Sbjct: 77  ESVPAKSVEVDIDLDTQWTPLKMTAEGREK 106


>emb|CAA72253.1| (Y11463) ORF3 [Streptococcus pneumoniae]
           Length = 109
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 73  EENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDN-TVYIKMTMTTPGCPLTL 131
           EE +   +  IL  L+EVIDPE+GID+VNLGLIYE++ + D     I MT+TT GCPL  
Sbjct: 5   EEQIENIKTRILTALEEVIDPELGIDIVNLGLIYEIRFDGDTGQTEIDMTLTTMGCPLAD 64

Query: 132 WILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
            +   + + ++E+P V D EV+L + P WT ++MS  A+  LG+
Sbjct: 65  LLTDQIYDAMIEVPEVTDTEVKLVWYPAWTVEKMSRYARIALGI 108


>pir||E72500 hypothetical protein APE1979 - Aeropyrum pernix (strain K1)
           >gi|5105677|dbj|BAA80989.1| (AP000063) 141aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 141
           
 Score = 90.1 bits (220), Expect = 1e-17
 Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 4/100 (4%)

Query: 81  DMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNT---VYIKMTMTTPGCPLTLWILRAV 137
           D I+E LKEV DPEI ++V +LGLIYE++V        + +KM++T  GCP+++ +   V
Sbjct: 23  DRIVEALKEVYDPEIPVNVYDLGLIYEVRVEGPREKPRIKVKMSLTAIGCPVSVALPAYV 82

Query: 138 EEKVLE-IPGVKDVEVELTFDPPWTPDRMSEEAKRRLGMI 176
           E+ + E +P  +DVEVE+ FDPPWTP+R++ E +  L  I
Sbjct: 83  EDAIREAVPEAEDVEVEVVFDPPWTPERVTPEGRELLKTI 122


>pir||C75306 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6459966|gb|AAF11715.1|AE002050_1 (AE002050)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 149
           
 Score = 87.0 bits (212), Expect = 1e-16
 Identities = 44/97 (45%), Positives = 62/97 (63%)

Query: 79  TEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVE 138
           +E  +LE LK V DPEI ++VV+LGLIY + +  D  V I MT+T+ GCP+   I    E
Sbjct: 48  SEAQVLEALKVVKDPEIPVNVVDLGLIYGVDILEDGNVDITMTLTSVGCPVQDLIRADAE 107

Query: 139 EKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
             V  + GV+ V VE  + PPW PD+M+E+ KR++ M
Sbjct: 108 MAVGRLDGVEGVNVEFVWTPPWGPDKMTEDGKRQMRM 144


>gb|AAK42053.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 129
           
 Score = 83.5 bits (203), Expect = 1e-15
 Identities = 39/89 (43%), Positives = 59/89 (65%)

Query: 83  ILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWILRAVEEKVL 142
           I++ L EV DPEI ID+VNLGLIY+L ++ +  VY+++  TTP CP+T  +   VE+ V 
Sbjct: 13  IIQGLHEVYDPEIPIDIVNLGLIYQLDISDEGDVYVRIGATTPACPVTEDLEYTVEQVVK 72

Query: 143 EIPGVKDVEVELTFDPPWTPDRMSEEAKR 171
           E    K ++VEL  +  WTP  M++E ++
Sbjct: 73  ESVQAKSIKVELDLETEWTPLMMTDEGRK 101


>pir||B82612 hypothetical protein XF2000 [imported] - Xylella fastidiosa
           (strain 9a5c) >gi|9107113|gb|AAF84802.1|AE004019_8
           (AE004019) hypothetical protein [Xylella fastidiosa]
           Length = 216
           
 Score = 76.9 bits (186), Expect = 1e-13
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 4/100 (4%)

Query: 80  EDMILEKLKEVIDPEIGIDVVNLGLIYELKV----NPDNTVYIKMTMTTPGCPLTLWILR 135
           E ++ ++L+   DPEI  ++V+LGL+YE  +    +   TV +KMT+T PGC +   ++ 
Sbjct: 116 EQLVWQQLRACFDPEIPFNIVDLGLVYEAMLGHRDDGQRTVQVKMTLTAPGCGMGGILVD 175

Query: 136 AVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
            V  K+  IP V    VEL FDPPW    MSE A+   GM
Sbjct: 176 DVRSKLELIPTVVAANVELVFDPPWGRHMMSESARLETGM 215


>pir||E70872 hypothetical protein Rv1466 - Mycobacterium tuberculosis  (strain
           H37RV) >gi|3261499|emb|CAA16008.1| (AL021184)
           hypothetical protein Rv1466 [Mycobacterium tuberculosis]
           Length = 115
           
 Score = 68.3 bits (164), Expect = 5e-11
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)

Query: 85  EKLKEVIDPEIGIDVVNLGLIYELKV---NPDNTVYIKMTMTTPGCPLTLWILRAVEEKV 141
           E +++V+DPE+GI+VV+LGL+Y L V   +      I MT+T+  CPLT  I       +
Sbjct: 17  EAMRDVVDPELGINVVDLGLVYGLDVQDGDEGTVALIDMTLTSAACPLTDVIEDQSRSAL 76

Query: 142 LEIPGVKDVEVELTFDPPWTPDRMSEEAKRRL 173
           +    V D+ +   ++PPW PD+++E+ + +L
Sbjct: 77  VGSGLVDDIRINWVWNPPWGPDKITEDGREQL 108


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.137    0.376 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65327561
Number of Sequences: 2977
Number of extensions: 2787242
Number of successful extensions: 7876
Number of sequences better than 1.0e-10: 15
Number of HSP's better than  0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7854
Number of HSP's gapped (non-prelim): 15
length of query: 176
length of database: 189,106,746
effective HSP length: 57
effective length of query: 119
effective length of database: 154,992,987
effective search space: 18444165453
effective search space used: 18444165453
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 162 (67.5 bits)