BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1088 1641958 1642788 277 !not a gene!
         (277 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71456 hypothetical protein PH0308 - Pyrococcus horikoshii ...   259  2e-68

>pir||F71456 hypothetical protein PH0308 - Pyrococcus horikoshii
           >gi|3256698|dbj|BAA29381.1| (AP000001) 215aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 215
           
 Score =  259 bits (655), Expect = 2e-68
 Identities = 140/205 (68%), Positives = 153/205 (74%)

Query: 73  MSNGLTAAATNNSPFSSLTAFLYFFLATRSLMVINPINLPXXXXXXXXXXXXXXXXXXXX 132
           MS GLTAAAT+NSPFSSLTAFLYFFLATRSL+VI P NLP                    
Sbjct: 1   MSKGLTAAATSNSPFSSLTAFLYFFLATRSLIVIKPTNLPLSSTTGSLSILFSIIIFKAS 60

Query: 133 XTSMFSGXXXXXXXXXXXXXXXXXAAISFLLIIPTTFSFSTTGRPSMSCFSIKKRAKSTV 192
            TS+ SG                 AA+SFL+IIPTTFS STTG+PS+ CFSIKK AKSTV
Sbjct: 61  STSILSGTVITSFVINSFTSFPSLAAMSFLVIIPTTFSSSTTGKPSIPCFSIKKSAKSTV 120

Query: 193 SSGLIVITSSTMNLSAFLTLFTCSTCSSMLIFLCITPKPPSLAIATAISHSVTVSMAALR 252
           SSG IVITSST+NLSA LTL TCSTCSS+ +FL ITP+PPSLA+ATAISHSVTVS+AALR
Sbjct: 121 SSGAIVITSSTINLSALLTLLTCSTCSSIPMFLWITPRPPSLAMATAISHSVTVSIAALR 180

Query: 253 IGMFSLTLGVIWVETSTSFGSTSVA 277
           IGMFSLT GVI VETSTSFGSTSVA
Sbjct: 181 IGMFSLTFGVIRVETSTSFGSTSVA 205


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.130    0.373 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71273669
Number of Sequences: 2977
Number of extensions: 2042623
Number of successful extensions: 9522
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9521
Number of HSP's gapped (non-prelim): 1
length of query: 277
length of database: 189,106,746
effective HSP length: 59
effective length of query: 218
effective length of database: 153,796,013
effective search space: 33527530834
effective search space used: 33527530834
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)