BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1089 (PAB1089) DE:Hypothetical protein
(197 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75015 hypothetical protein PAB1089 - Pyrococcus abyssi (st... 393 e-108
pir||D71456 hypothetical protein PH0306 - Pyrococcus horikoshii ... 332 2e-90
emb|CAC11182.1| (AL445063) hypothetical protein [Thermoplasma ac... 117 8e-26
gi|11498625 A. fulgidus predicted coding region AF1020 [Archaeog... 85 7e-16
pir||A75181 hypothetical protein PAB2435 - Pyrococcus abyssi (st... 78 7e-14
pir||B71033 hypothetical protein PH1554 - Pyrococcus horikoshii ... 76 2e-13
gb|AAG20410.1| (AE005113) Vng2296c [Halobacterium sp. NRC-1] 76 2e-13
>pir||F75015 hypothetical protein PAB1089 - Pyrococcus abyssi (strain Orsay)
>gi|5459078|emb|CAB50564.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 197
Score = 393 bits (998), Expect = e-108
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MTKMIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIV 60
MTKMIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIV
Sbjct: 1 MTKMIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIV 60
Query: 61 YHTIEYIESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSE 120
YHTIEYIESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSE
Sbjct: 61 YHTIEYIESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSE 120
Query: 121 EGIRVIEIFGSNPYEGKSVVYIVVEGILPFKVISSLKGESSIEKIVIRTSEKDKEKMICP 180
EGIRVIEIFGSNPYEGKSVVYIVVEGILPFKVISSLKGESSIEKIVIRTSEKDKEKMICP
Sbjct: 121 EGIRVIEIFGSNPYEGKSVVYIVVEGILPFKVISSLKGESSIEKIVIRTSEKDKEKMICP 180
Query: 181 KCEVKYCPRKILLTQRS 197
KCEVKYCPRKILLTQRS
Sbjct: 181 KCEVKYCPRKILLTQRS 197
>pir||D71456 hypothetical protein PH0306 - Pyrococcus horikoshii
>gi|3256696|dbj|BAA29379.1| (AP000001) 197aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 197
Score = 332 bits (842), Expect = 2e-90
Identities = 162/197 (82%), Positives = 180/197 (91%)
Query: 1 MTKMIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIV 60
MT+MIHILEEYFRGYPARKKVVKFLWEAGLSVKNGK+YVKDVEVPITGIAE TGVNRKIV
Sbjct: 1 MTEMIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKIYVKDVEVPITGIAEVTGVNRKIV 60
Query: 61 YHTIEYIESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSE 120
YHTIEYIESKPALKILFENL+P+ SL SIAP MGWEVLELTIS++ YE T+A VL+ L++
Sbjct: 61 YHTIEYIESKPALKILFENLAPRQSLISIAPLMGWEVLELTISKKAYESTVAMVLNGLAK 120
Query: 121 EGIRVIEIFGSNPYEGKSVVYIVVEGILPFKVISSLKGESSIEKIVIRTSEKDKEKMICP 180
IRVIEIFG+N YEGK+ VYIV+EG+LPF +I+ LK ++IEKIVIRTSEKDKEKMICP
Sbjct: 121 RRIRVIEIFGTNTYEGKAKVYIVIEGVLPFDMIAELKKTNTIEKIVIRTSEKDKEKMICP 180
Query: 181 KCEVKYCPRKILLTQRS 197
KCEVKYCPRKI LTQRS
Sbjct: 181 KCEVKYCPRKISLTQRS 197
>emb|CAC11182.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 199
Score = 117 bits (291), Expect = 8e-26
Identities = 52/189 (27%), Positives = 111/189 (58%), Gaps = 1/189 (0%)
Query: 4 MIHILEEYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIVYHT 63
M+ IL+EYF+ +P + ++V L+ +G+S++NG+ + DVE+ ++ IA A VNRK VY T
Sbjct: 1 MLLILDEYFKEHPIKLRIVDGLYTSGISIRNGRFFTNDVEISVSEIASAFNVNRKTVYET 60
Query: 64 IEYIESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGI 123
I+ +ES +L+ + ++ P +A +A G +++ + + ++ +T+S+ G
Sbjct: 61 IKLVESNDSLRRVMSSIKPMADIADVALLTGNQIITAYTTLGHFPYVFKEIFNTISKYGC 120
Query: 124 RVIEIFGSNPYEGKSVVYIVVEGILPFKVISSLKGESSIEKIVIRTSEKDKEKMICPKCE 183
+ E+F N + +S + I+ +P ++I ++ ++ + +R + D ++++C C+
Sbjct: 121 YIREVFSRNMSQEESFIRIIFYRPIPDRIIGQIRKIDGVKSLEVRVN-MDTDQILCNNCD 179
Query: 184 VKYCPRKIL 192
+K CP K +
Sbjct: 180 IKICPTKYI 188
>gi|11498625 A. fulgidus predicted coding region AF1020 [Archaeoglobus fulgidus]
>gi|7429764|pir||D69377 hypothetical protein AF1020 -
Archaeoglobus fulgidus >gi|2649579|gb|AAB90227.1|
(AE001033) A. fulgidus predicted coding region AF1020
[Archaeoglobus fulgidus]
Length = 165
Score = 84.7 bits (206), Expect = 7e-16
Identities = 54/159 (33%), Positives = 85/159 (52%), Gaps = 2/159 (1%)
Query: 10 EYFRGYPARKKVVKFLWEAGLSVKNGKVYVKDVEVPITGIAEATGVNRKIVYHTIEYIES 69
E F YP++ V + G+SV+NGK Y D+E+ T IAEA GV+RK+V I+ IES
Sbjct: 7 EKFEKYPSQIAVAREFLRLGISVRNGKAYCGDIELVPTKIAEAIGVDRKVVLAAIQNIES 66
Query: 70 KPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGIRVIEIF 129
L +F L P ++A +A +G+ VLE+ + +A V S L+ GI + I
Sbjct: 67 DEELSKVFSALKPVANIAEVARILGFGVLEV-YAESTKVGIVAGVASALANAGISIRYIL 125
Query: 130 GSNP-YEGKSVVYIVVEGILPFKVISSLKGESSIEKIVI 167
+P +S + +V E +P V+ + +EK++I
Sbjct: 126 AEDPELSVESKLTVVTETKIPGAVVEEILRVEGVEKVLI 164
>pir||A75181 hypothetical protein PAB2435 - Pyrococcus abyssi (strain Orsay)
>gi|5458038|emb|CAB49528.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 166
Score = 78.0 bits (189), Expect = 7e-14
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 8 LEEYFRGYPARKKVVKFLWEAGLSVKNG-KVYVKDVEVPITGIAEATGVNRKIVYHTIEY 66
+E YF YP RK + K L GL V K+ ++EVP T IA+A V+R++V T+
Sbjct: 5 IEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKETVAM 64
Query: 67 IESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGIRVI 126
I P L+ ++ NL P + + +G+ V+E+ R LAKV +++ GI ++
Sbjct: 65 ILKTPELREIYMNLEPTVHMKYVGKHVGYGVIEIEPEPRAI-GILAKVAQKIADRGINIV 123
Query: 127 EIFGSNP-YEGKSVVYIVVEGILPFKVISSLKGESSIEKIVI 167
+ +P ++ + I+ E +P +I+ L +++I I
Sbjct: 124 QAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
>pir||B71033 hypothetical protein PH1554 - Pyrococcus horikoshii
>gi|3257983|dbj|BAA30666.1| (AP000006) 166aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 166
Score = 76.5 bits (185), Expect = 2e-13
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 8 LEEYFRGYPARKKVVKFLWEAGLSVKNG-KVYVKDVEVPITGIAEATGVNRKIVYHTIEY 66
+E YF YP RK + K L GL V K+ ++EVP T IA+A V+R++V T+
Sbjct: 5 IEHYFDEYPVRKLIAKTLLRYGLRVSEDMKIKAGEIEVPYTKIAKALNVDRRVVKETVAM 64
Query: 67 IESKPALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGIRVI 126
I P L+ ++ NL P + + +G+ V+E+ R LA+V +++ GI ++
Sbjct: 65 ILKTPELRDIYMNLEPTVHMKYVGRHVGYGVIEIEPEPRAI-GILARVAQKIADRGINIV 123
Query: 127 EIFGSNP-YEGKSVVYIVVEGILPFKVISSLKGESSIEKIVI 167
+ +P ++ + I+ E +P +I+ L +++I I
Sbjct: 124 QAIAEDPELYPEATLTIITEKPIPGDLINELSKLEGVKRISI 165
>gb|AAG20410.1| (AE005113) Vng2296c [Halobacterium sp. NRC-1]
Length = 162
Score = 76.5 bits (185), Expect = 2e-13
Identities = 45/156 (28%), Positives = 82/156 (51%), Gaps = 2/156 (1%)
Query: 12 FRGYPARKKVVKFLWEAGLSVKNG-KVYVKDVEVPITGIAEATGVNRKIVYHTIEYIESK 70
F G P ++ V++ L E G SV +G +V +E+P T +A+ GV+R++V T E I
Sbjct: 4 FEGSPGQQAVIRLLLERGFSVNDGGRVVSGGIEIPYTQVAQEAGVDRRVVDSTTEAILDD 63
Query: 71 PALKILFENLSPKHSLASIAPFMGWEVLELTISRRDYEKTLAKVLSTLSEEGIRVIEIFG 130
L +F+N+S SL +AP + V+ + + D +A V L++ GI + +
Sbjct: 64 GELTRIFQNISQIPSLMDLAPVLDLHVVTVAVQDADEPGIVAAVTGLLADHGIPIRQTIS 123
Query: 131 SNP-YEGKSVVYIVVEGILPFKVISSLKGESSIEKI 165
+P + + +Y+V + LP V ++L S++ +
Sbjct: 124 EDPEFTDEPRLYVVTDEELPGAVFTALAEMSAVRSV 159
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68695682
Number of Sequences: 2977
Number of extensions: 2564847
Number of successful extensions: 7285
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7278
Number of HSP's gapped (non-prelim): 7
length of query: 197
length of database: 189,106,746
effective HSP length: 56
effective length of query: 141
effective length of database: 155,591,474
effective search space: 21938397834
effective search space used: 21938397834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)