BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1090 (PAB1090) DE:Hypothetical protein
         (104 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75016 hypothetical protein PAB1090 - Pyrococcus abyssi (st...   221  2e-57

>pir||A75016 hypothetical protein PAB1090 - Pyrococcus abyssi (strain Orsay)
           >gi|5459081|emb|CAB50567.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 104
           
 Score =  221 bits (558), Expect = 2e-57
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MEWKEKFKREGFLDVGDFIIELIYVDCPCEPLPPMLAIYDKKEDEWYRVDERVEANNYTE 60
           MEWKEKFKREGFLDVGDFIIELIYVDCPCEPLPPMLAIYDKKEDEWYRVDERVEANNYTE
Sbjct: 1   MEWKEKFKREGFLDVGDFIIELIYVDCPCEPLPPMLAIYDKKEDEWYRVDERVEANNYTE 60

Query: 61  AFEWACSVIERIIRGDNVSLVSIDGPAPDPVLKRLRENLSKLTS 104
           AFEWACSVIERIIRGDNVSLVSIDGPAPDPVLKRLRENLSKLTS
Sbjct: 61  AFEWACSVIERIIRGDNVSLVSIDGPAPDPVLKRLRENLSKLTS 104


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.439 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42745559
Number of Sequences: 2977
Number of extensions: 1570359
Number of successful extensions: 3253
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 1
length of query: 104
length of database: 189,106,746
effective HSP length: 47
effective length of query: 57
effective length of database: 160,977,857
effective search space: 9175737849
effective search space used: 9175737849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 159 (66.3 bits)