BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1091 (PAB1091) DE:Hypothetical protein
(484 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75016 hypothetical protein PAB1091 - Pyrococcus abyssi (st... 994 0.0
pir||A71456 hypothetical protein PH0303 - Pyrococcus horikoshii ... 971 0.0
gb|AAK40584.1| Conserved hypothetical protein [Sulfolobus solfat... 490 e-137
gi|11498262 conserved hypothetical protein [Archaeoglobus fulgid... 432 e-120
dbj|BAB05189.1| (AP001512) unknown conserved protein in others [... 316 4e-85
pir||A72358 conserved hypothetical protein - Thermotoga maritima... 152 1e-35
dbj|BAA95933.1| (AB035092) Orf1 [Clostridium perfringens] 113 4e-24
emb|CAB69801.1| (AJ243711) hypothetical protein [Bacillus cereus] 102 9e-21
pir||H82278 conserved hypothetical protein VC0806 [imported] - V... 74 3e-12
pir||S76076 hypothetical protein - Synechocystis sp. (strain PCC... 73 1e-11
>pir||B75016 hypothetical protein PAB1091 - Pyrococcus abyssi (strain Orsay)
>gi|5459082|emb|CAB50568.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 484
Score = 994 bits (2542), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MEQKFDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKPCH 60
MEQKFDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKPCH
Sbjct: 1 MEQKFDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKPCH 60
Query: 61 IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD 120
IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD
Sbjct: 61 IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD 120
Query: 121 PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFNK 180
PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFNK
Sbjct: 121 PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFNK 180
Query: 181 GWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPAIIM 240
GWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPAIIM
Sbjct: 181 GWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPAIIM 240
Query: 241 EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDSYVGVNGHSMREKKSNNTNF 300
EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDSYVGVNGHSMREKKSNNTNF
Sbjct: 241 EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDSYVGVNGHSMREKKSNNTNF 300
Query: 301 ALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSRIRKSDVEP 360
ALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSRIRKSDVEP
Sbjct: 301 ALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSRIRKSDVEP 360
Query: 361 TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL 420
TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL
Sbjct: 361 TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL 420
Query: 421 LETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIEAL 480
LETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIEAL
Sbjct: 421 LETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIEAL 480
Query: 481 EPED 484
EPED
Sbjct: 481 EPED 484
>pir||A71456 hypothetical protein PH0303 - Pyrococcus horikoshii
>gi|3256693|dbj|BAA29376.1| (AP000001) 484aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 484
Score = 971 bits (2484), Expect = 0.0
Identities = 468/483 (96%), Positives = 479/483 (98%)
Query: 1 MEQKFDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKPCH 60
ME+KFDVVIIGAGPAGLFAAYELVE+SNLKVLII+EGGDVDQRVCPMYELGYCIGCKPCH
Sbjct: 1 MEEKFDVVIIGAGPAGLFAAYELVEKSNLKVLIIEEGGDVDQRVCPMYELGYCIGCKPCH 60
Query: 61 IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD 120
IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD
Sbjct: 61 IMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGD 120
Query: 121 PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFNK 180
PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLE KGVKFLLWTKALEFNK
Sbjct: 121 PEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLEKKGVKFLLWTKALEFNK 180
Query: 181 GWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPAIIM 240
GWVKV+RGKD FTI A+YIIVAPGRGGA+WFHEVAKKIGLKARHGPIDVGVRVEVPAI+M
Sbjct: 181 GWVKVRRGKDTFTINARYIIVAPGRGGADWFHEVAKKIGLKARHGPIDVGVRVEVPAIVM 240
Query: 241 EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDSYVGVNGHSMREKKSNNTNF 300
EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYD+YVGVNGHSMREKKSNNTNF
Sbjct: 241 EPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDNYVGVNGHSMREKKSNNTNF 300
Query: 301 ALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSRIRKSDVEP 360
ALLTRIELTEPVEDTTAYG+SIAQLATTIGGGKPIIQRLGDLR+GRRSTWSRIRKSDVEP
Sbjct: 301 ALLTRIELTEPVEDTTAYGKSIAQLATTIGGGKPIIQRLGDLRRGRRSTWSRIRKSDVEP 360
Query: 361 TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL 420
TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL
Sbjct: 361 TLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNEL 420
Query: 421 LETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIEAL 480
LET+IENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIE L
Sbjct: 421 LETNIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGLYNLKDFKKPGNWKEKIENL 480
Query: 481 EPE 483
EPE
Sbjct: 481 EPE 483
>gb|AAK40584.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 469
Score = 490 bits (1247), Expect = e-137
Identities = 243/469 (51%), Positives = 339/469 (71%), Gaps = 16/469 (3%)
Query: 5 FDVVIIGAGPAGLFAAYELV-----ERSNLKVLIIDEGGDVDQRVCPMYE-LGYCIGCKP 58
+DVVIIG GPAGLFAAYEL SN K+L++D+G +R CP+ C C P
Sbjct: 4 YDVVIIGGGPAGLFAAYELAGLAKDNVSNYKILLVDKGARASKRTCPLLSPKEKCTFCDP 63
Query: 59 CHIMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRN-LY 117
CHIM G GGAG S G +NLRPDIGG+L E+T + + +L+ VD I ++ AP++ ++
Sbjct: 64 CHIMYGFGGAGTFSSGIINLRPDIGGELHEITRSWDKAQELINYVDDIFVKFGAPKDRVF 123
Query: 118 KGDPEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALE 177
+ + E+++ +R+AA+ G +F+PI QRH+G+D TP +I++I NY+E +G+K T+ ++
Sbjct: 124 EPNMEKVREIQRRAAKVGAEFVPIRQRHMGTDKTPLIIENIVNYVEKRGIKIGELTEVID 183
Query: 178 F----NKGWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRV 233
NK ++K RG+ IE++ ++VAPGR GA+WF+E +KK+G+ GP+D+GVRV
Sbjct: 184 IEKKGNKFFLKTSRGE----IESRIVLVAPGRAGAKWFYEQSKKLGVDTIPGPLDIGVRV 239
Query: 234 EVPAIIMEPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDS-YVGVNGHSMRE 292
E + + + +T DPK +Y+ YDD VRTFC NP G++++E YD +GVNG + +
Sbjct: 240 ETESFVFDELTEAVWDPKVILYSKRYDDKVRTFCVNPRGYIMKEVYDDGTIGVNGETYVD 299
Query: 293 KKSNNTNFALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWSR 352
KKSNNTNFA LT I+L++P+EDT YG+SIA+L T +GGGKPI+QRL D +KGRRSTW R
Sbjct: 300 KKSNNTNFAFLTTIKLSDPLEDTIEYGKSIARLMTRLGGGKPILQRLIDFQKGRRSTWER 359
Query: 353 IRKSDVEPTLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYA 412
I +S V+PTL+ VTPGDI+M LP+RVV N+I+GLERLD + PG+ S +TLLYAPEIKYY+
Sbjct: 360 INRSTVKPTLRDVTPGDISMGLPYRVVDNLIDGLERLDSIAPGIFSSNTLLYAPEIKYYS 419
Query: 413 MRVEVNELLETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGL 461
+R V+ +ET ++N+FAAGDG GLSR I AAATGI+AARGI +K GL
Sbjct: 420 VRAVVDNNMETVVDNLFAAGDGTGLSRGINVAAATGILAARGIAIKLGL 468
>gi|11498262 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7459711|pir||F69331 conserved hypothetical protein
AF0654 - Archaeoglobus fulgidus
>gi|2649964|gb|AAB90586.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 466
Score = 432 bits (1100), Expect = e-120
Identities = 227/471 (48%), Positives = 320/471 (67%), Gaps = 20/471 (4%)
Query: 4 KFDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPM-YELGYCIGCKPCHIM 62
KFDV+I+GAGP G+FAAY+L + N I + G D+ +R CP YC C PC+I
Sbjct: 2 KFDVIIVGAGPGGMFAAYKLAGKLN--TAIFEMGRDISKRKCPSDLSESYCTKCNPCNIT 59
Query: 63 SGVGGAGGLSDGTVN-LRPD------IGGDLTELTNDENYSWQLVWEVDQILLRHEAPRN 115
SGVGGAGGLSDG +N + P+ +GGD L D NY + + EVD+I L+H AP
Sbjct: 60 SGVGGAGGLSDGKLNYVHPEYPSSFSVGGDFDFL--DPNYLIEKMNEVDEIFLKHGAPDE 117
Query: 116 LYKGDPEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKA 175
LY D E+I+ + ++A AG++F+P+ QRH+GSD PKV+KSI++ L+ +GVK
Sbjct: 118 LYGDDLEKIEDFLKRANAAGIEFVPLRQRHVGSDELPKVVKSIEDKLKKEGVKIYTRKTV 177
Query: 176 LEFN--KGWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGP--IDVGV 231
++ + + V+ ++G++ Y+I+A GR GA W + A+ L+ IDVGV
Sbjct: 178 VDIDPERKVVRTEKGEE---FGYDYLIIAVGRSGASWLEKWARDYNLEVAENSKAIDVGV 234
Query: 232 RVEVPAIIMEPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDSYVGVNGHSMR 291
RVEVPA IM+ ITS +DPK + T +DD++RTFCT P G+V+ E Y + VNGHS
Sbjct: 235 RVEVPASIMDDITSAIYDPKLRVITKRHDDYMRTFCTCPRGWVIREDYGDFCLVNGHSKA 294
Query: 292 EKKSNNTNFALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPIIQRLGDLRKGRRSTWS 351
++KS+NTNFALL E TEP ++ +GR +A++ T +GGG PI+QRL DLR GRRST S
Sbjct: 295 KEKSSNTNFALLGHYEFTEPFDEPNEWGRDLARITTKLGGGNPIVQRLKDLRLGRRSTES 354
Query: 352 RIRKSD-VEPTLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKY 410
RI+ + V+PTLK PGDI++A P R + +I++ LERLDKVIPGVA D TLLYAPE+K+
Sbjct: 355 RIKNNRLVQPTLKTAIPGDISLAYPGRAIDDILDALERLDKVIPGVADDSTLLYAPEVKF 414
Query: 411 YAMRVEVNELLETSIENVFAAGDGAGLSRDIVNAAATGIMAARGILVKEGL 461
Y+++++V+E ++T+I ++A GDGAG+SR IV AA TG++AA GIL + G+
Sbjct: 415 YSLKLKVDEWMKTNIPYIYAIGDGAGVSRGIVGAAVTGLIAAEGILRERGM 465
>dbj|BAB05189.1| (AP001512) unknown conserved protein in others [Bacillus
halodurans]
Length = 480
Score = 316 bits (801), Expect = 4e-85
Identities = 180/482 (37%), Positives = 277/482 (57%), Gaps = 29/482 (6%)
Query: 1 MEQKFDVVIIGAGPAGLFAAYELVERS-NLKVLIIDEGGDVDQRVCPMYE--LGYC---- 53
M +DV+I+GAGPAG+F AYEL+E+ K+L+ID+G + QR CP+ E + C
Sbjct: 1 MNNAYDVIIVGAGPAGIFTAYELLEKQPTFKLLLIDKGHSIYQRRCPINEKKIEKCPPPA 60
Query: 54 -----IGCKP-CHIMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQIL 107
GC P C I +G GGAG SDG N+ + GG + + +L+ VD +
Sbjct: 61 GRKEFAGCLPACSITAGFGGAGAYSDGKFNITTEFGGWMQDYLPPSEVL-ELIQYVDAVN 119
Query: 108 LRHEAPRNLYKGDPEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESK-G 166
L++ AP + E ++ E++A AG+K + RH+G++ +++K+I LE +
Sbjct: 120 LKYGAPDEITDPTTEAVRGIEKRAMGAGLKLLRAQVRHLGTEKNLEILKNIYESLEGRLE 179
Query: 167 VKFLLWTKAL--EFNKGWVKVQ------RGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKI 218
+F + L E + +KV+ +G++++ A +++ PGR G+EW + KK
Sbjct: 180 ARFRTEVEDLLTEKTENGLKVKGVRLKTKGEELY---ADQVVIVPGRDGSEWLGGLLKKR 236
Query: 219 GLKARHGPIDVGVRVEVPAIIMEPITSINHDPKFHIYTDTYDDFVRTFCTNPYGFVVEER 278
GL + +D+GVRVE +IME I ++ KF IY + VRTFC+NP G VV E
Sbjct: 237 GLTMINNQVDIGVRVETSDVIMEDINRHLYEAKF-IYNTSVGTKVRTFCSNPSGHVVVEN 295
Query: 279 YDSYVGVNGHSMREKK--SNNTNFALLTRIELTEPVEDTTAYGRSIAQLATTIGGGKPII 336
+ + NGH+ + K+ S NTNFALL TEP + Y + I++ A + G I+
Sbjct: 296 HSGVMTANGHAYKAKELGSRNTNFALLVSHTFTEPFDRPIQYAKEISERANDLSNGSVIV 355
Query: 337 QRLGDLRKGRRSTWSRIRKSDVEPTLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGV 396
Q+ GD+ +GRRST RI++ +EPTLK PGD+ + LP+ + ++IE +E LD V PG+
Sbjct: 356 QKYGDILRGRRSTEKRIKEGFIEPTLKEAVPGDLGLVLPYNTMKSLIEMMEALDHVTPGI 415
Query: 397 ASDHTLLYAPEIKYYAMRVEVNELLETSIENVFAAGDGAGLSRDIVNAAATGIMAARGIL 456
AS+HTL Y E K+Y+ R +V + ET I ++A GDGAG++R + A A G+ AR I+
Sbjct: 416 ASEHTLFYGVEAKFYSARPQVTKEFETEIAGLYAGGDGAGITRGLAQAGANGVHIARAII 475
Query: 457 VK 458
K
Sbjct: 476 RK 477
>pir||A72358 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981119|gb|AAD35685.1|AE001734_12 (AE001734)
conserved hypothetical protein [Thermotoga maritima]
Length = 447
Score = 152 bits (379), Expect = 1e-35
Identities = 105/323 (32%), Positives = 164/323 (50%), Gaps = 24/323 (7%)
Query: 145 HIGSDNTPKVIKSIKNYLES-KGVKFLLWTKALEFNKG---WVKVQRGKDVFTIEAKYII 200
H+G+D + K+I Y S + ++FL T + G V RG E ++
Sbjct: 138 HLGTDILKETNKNIYEYFSSFENIEFLFGTTVEDVEFGPPHRVHTNRGD----FEFDELV 193
Query: 201 VAPGRGGAEWFHEVAKKIGLKARHGP-IDVGVRVEVPAIIMEPITSINHDPKFHIYTDTY 259
+A GR G + +K R +D+GVR E+P +M+P + + ++ K T T
Sbjct: 194 IAVGRSGHRLMERLKEKYPQLVRPNQFVDIGVRYELPNHVMDPFSDM-YEVKVRYRTKT- 251
Query: 260 DDFVRTFCTNPYGFVVEERYDSYVGVNGHSMREKKSNNTNFALLTRIELTEPVEDTTAYG 319
R FC NP G V E+Y+ + VNG+S K+ NTNFA+L TEP +D T YG
Sbjct: 252 GYICRIFCQNPAGKVTLEKYEDFTTVNGYSDSLHKTENTNFAILVTTRFTEPFKDPTGYG 311
Query: 320 RSIAQLATTIGGGKP--IIQRLGDLRKGRRSTWSRIRKSDVEPTL--KHVTPGDIAMALP 375
++A+LA + G K I+Q GD ++ RR+ R V PTL + GD + P
Sbjct: 312 VNLAKLANILAGDKEKVILQTYGDFKEFRRTK----RLGRVHPTLDSESYILGDANLVFP 367
Query: 376 HRVVTNIIEGLERLDKVIPGVASDHTLLYAPEIKYYAMRVEVNELLETSIENVFAAGDGA 435
++ ++++ +E L+KVIPG + LLYA E+K+Y N+ L +E + GD +
Sbjct: 368 SKIRESLVDFVENLEKVIPGASYFDNLLYAVEVKFY-----TNKFLNDIVEGLHVVGDCS 422
Query: 436 GLSRDIVNAAATGIMAARGILVK 458
G +R I A + G M A G+ ++
Sbjct: 423 GWTRSIQYATSMGYMRAVGMKIQ 445
>dbj|BAA95933.1| (AB035092) Orf1 [Clostridium perfringens]
Length = 533
Score = 113 bits (281), Expect = 4e-24
Identities = 126/479 (26%), Positives = 203/479 (42%), Gaps = 80/479 (16%)
Query: 8 VIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKP-CHIMSGVG 66
V++G GPAGLFAA L+ + ++ + G DVD R + E P ++ G G
Sbjct: 100 VVVGLGPAGLFAAL-LLAKKGFNPIVFERGEDVDSRTKTVEEFWRTGELNPESNVQFGEG 158
Query: 67 GAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNL-YKGDPEQIK 125
GAG SDG LT D + L L+R+ AP + YKG P
Sbjct: 159 GAGAFSDGK----------LTTRIKDTRCDYVL-----DALVRNGAPEEIIYKGKP---- 199
Query: 126 YWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFN---KGW 182
H+G+D V+K+I+ ++ G + + FN +G
Sbjct: 200 -------------------HVGTDILKNVVKNIREEIKRNGGE-------VHFNSRFEGI 233
Query: 183 VKVQRGKDVFTIEAKYI-----IVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPA 237
+K + + + I+A G + + E+ G+ + P +GVR+E P
Sbjct: 234 IKKDNKLKGIKVNGEEVPCEVAILALGHSSRDTY-EMLFNEGVFMKQKPFAIGVRIEHPQ 292
Query: 238 IIMEPITS----INH------DPKFHIYTDTYDDFVRTFCTNPYGFVVE-ERYDSYVGVN 286
I+ NH + + + T D V +FC P G VV + + VN
Sbjct: 293 EIINLSQYGEKYANHPRLKAAEYRLAYQSKTLDRAVYSFCMCPGGVVVNASSEEKRLCVN 352
Query: 287 GHSMREKKSNNTNFALLTRIELTE-----PVEDTTAYGRSIAQLATTIGGGK--PIIQRL 339
G S + N N AL+ + + P+E + R +LA +GGG +Q +
Sbjct: 353 GMSYHARDKENANSALVVTVGPNDFGGDHPLEGMK-FQRHYEELAFKLGGGNYNTPVQLV 411
Query: 340 GDLRKGRRSTWSRIRKSDVEPTLKHVTPGDIAMALPHRVVTNIIEGLERLDKVIPGVASD 399
GD K R +T ++ K + D+ LP V+ + EG+ D+ I G
Sbjct: 412 GDFMKDRVTT--KLGKVNPSVLSNGYRFEDLRKCLPSYVIDGLKEGITDFDRKIKGFGHS 469
Query: 400 HTLLYAPEIKYYA-MRVEVNELLET-SIENVFAAGDGAGLSRDIVNAAATGIMAARGIL 456
++L E + A +R+E NE L++ S+E ++ AG+GAG + IV+AA G+ A I+
Sbjct: 470 DSVLTGIETRTSAPVRIERNEKLQSISLEGLYPAGEGAGFAGGIVSAAVDGLKVAENIM 528
>emb|CAB69801.1| (AJ243711) hypothetical protein [Bacillus cereus]
Length = 242
Score = 102 bits (252), Expect = 9e-21
Identities = 73/238 (30%), Positives = 119/238 (49%), Gaps = 21/238 (8%)
Query: 5 FDVVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKPCHIMSG 64
+DV IIGAG + +F AY L +SN KVLI+D+G ++ R CP+ E C C C G
Sbjct: 2 YDVTIIGAGVSSIFMAYSLA-KSNKKVLILDKGKALEDRHCPLDEGKVC-NCTTCDKYFG 59
Query: 65 VGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGDPEQI 124
GG G S+G N GG+L + E + QL+ EVD+IL + ++ K E
Sbjct: 60 FGGLGK-SEGKFNYTNGFGGELEKKVGKEGFL-QLMAEVDEILCQFGGS-SVSKYSTENS 116
Query: 125 KYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKALEFNKGWVK 184
+R A G++ + RH+G+ + + + + +FLL ++F+
Sbjct: 117 SLTKRAEA-CGLQMLTTEVRHLGTTLSSNIFQQL--------YEFLLTKIKIQFHIDVQH 167
Query: 185 VQRGKDVFTIEA-------KYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEV 235
+ + +D FTI+ K ++ A GR GA+W E+ + + +D+G+RVE+
Sbjct: 168 ILKQEDHFTIDTNQGTVQTKQLVFATGRSGADWLKEMCSSLNISQEQTRVDLGIRVEM 225
>pir||H82278 conserved hypothetical protein VC0806 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655255|gb|AAF93970.1|
(AE004165) conserved hypothetical protein [Vibrio
cholerae]
Length = 538
Score = 74.1 bits (179), Expect = 3e-12
Identities = 107/473 (22%), Positives = 187/473 (38%), Gaps = 70/473 (14%)
Query: 8 VIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCKP-CHIMSGVG 66
++IG GP GLFA L + +I++ G +V +R + ++ G G
Sbjct: 100 LVIGFGPCGLFAGLVLAQMG-FNPIIVERGKEVRERTKDTFGFWRKRTLNTESNVQFGEG 158
Query: 67 GAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRNLYKGDPEQIKY 126
GAG SDG + +++ + Y +++ E + G PE+I Y
Sbjct: 159 GAGTFSDGKL---------YSQVKDPNFYGRKVITEFVEA------------GAPEEILY 197
Query: 127 WERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKG--VKFLLWTKALEFNKGWVK 184
+ + HIG+ +I+ ++ + G ++F + G +
Sbjct: 198 --------------VSKPHIGTFKLVTMIEKMRAKIIELGGEIRFSTRVDDIHMQDGQIT 243
Query: 185 VQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDVGVRVEVPAIIMEPIT 244
+ I+++++++A G + F E+ G+ P VG R+E +++
Sbjct: 244 GVILSNGEEIQSRHVVLAVGHSARDTF-EMLHARGVYMEAKPFSVGFRIEHKQSMIDEAR 302
Query: 245 ---SINH------DPKFHIYTDTYDDFVRTFCTNPYGFVVEERYDS-YVGVNGHSMREKK 294
S H D K ++ V +FC P G VV + V NG S +
Sbjct: 303 FGPSAGHPILGAADYKL-VHHCKNGRTVYSFCMCPGGTVVAATSEEGRVVTNGMSQYSRA 361
Query: 295 SNNTNFALLTRIELTEPVEDTTAYG----RSIAQLATTIGGGK--PIIQRLGDLRKGRRS 348
N N A++ I + G R + A +GG Q++GD KGR
Sbjct: 362 ERNANSAIVVGISPEQDYPGDPLAGIRLQRELETNAYKLGGETYDAPAQKIGDFLKGRNP 421
Query: 349 TWSRIRKSDVEPTLKHVTPG----DIAMALPHRVVTNIIEGLERLDKVIPGVASDHTLLY 404
+ DV+P+ TPG D++ ALP V I E + D+ I G AS+ LL
Sbjct: 422 S----ELGDVQPSF---TPGIKLTDLSKALPAFAVEAIREAIPEFDRQIKGFASEDGLLT 474
Query: 405 APEIKYYAMRV--EVNELLETSIENVFAAGDGAGLSRDIVNAAATGIMAARGI 455
E + + + +++ + AG+GAG + I++A GI A +
Sbjct: 475 GVETRTSSPVCIKRGKDFQSINLKGFYPAGEGAGYAGGILSAGIDGIKVAEAV 527
>pir||S76076 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001430|dbj|BAA10054.1| (D63999) ORF1 [Synechocystis
sp.]
Length = 540
Score = 72.6 bits (175), Expect = 1e-11
Identities = 111/484 (22%), Positives = 197/484 (39%), Gaps = 77/484 (15%)
Query: 2 EQKFD---VVIIGAGPAGLFAAYELVERSNLKVLIIDEGGDVDQRVCPMYELGYCIGCK- 57
+QKF+ ++IG GP G+FA L+ + LK +I++ G V R + + + K
Sbjct: 94 DQKFEGKRPIVIGTGPCGMFAGL-LLAQMGLKPIILERGKSVRDRSVDTFR--FWVKGKL 150
Query: 58 --PCHIMSGVGGAGGLSDGTVNLRPDIGGDLTELTNDENYSWQLVWEVDQILLRHEAPRN 115
++ G GGAG SDG L D N+ + V E
Sbjct: 151 HAESNVQFGEGGAGTFSDGK----------LYSQVRDPNHYGRKVLE------------- 187
Query: 116 LYKGDPEQIKYWERKAAQAGVKFIPIIQRHIGSDNTPKVIKSIKNYLESKGVKFLLWTKA 175
E A A + + I + HIG+ K+++++++ +E G + +
Sbjct: 188 ------------EFVKAGADPEILYINRPHIGTYRLVKIVQNLRSTIEELGGEIHFQSHV 235
Query: 176 LEFN------KGWVKVQRGKDVFTIEAKYIIVAPGRGGAEWFHEVAKKIGLKARHGPIDV 229
+ N +G V ++ G + T ++++A G + F + ++ G+ P +
Sbjct: 236 TDINIKDNQVQG-VTLENGDYIAT---NHVVLAVGHSARDTFKMLFER-GVYIEAKPFSI 290
Query: 230 GVRVEVPAIIMEPI---TSINH------DPKFHIYTDTYDDFVRTFCTNPYGFVVEERYD 280
G R+E P +++ T H D K ++ V +FC P G VV +
Sbjct: 291 GFRIEHPQSLIDQCRFGTQAGHPRLGSADYKL-VHHCQNGRSVYSFCMCPGGKVVAAASE 349
Query: 281 -SYVGVNGHSMREKKSNNTNFALLTRIELTEPVEDTTAYGRSIAQL----ATTIGGGKPI 335
+ NG S + N N A++ I D G ++ + A +GG
Sbjct: 350 PGRLVTNGMSEYARDEANANSAIVVGITPEVDYPDHPLAGIALQRFWEERAFQLGGENYQ 409
Query: 336 I--QRLGDLRKGRRSTWSRIRKSDVEPTLKHVTPGDIAMALPHRVVTNIIEGLERLDKVI 393
Q +GD R ST +P +K V G+ +LP + + E + DK I
Sbjct: 410 APGQLVGDFLANRPSTKFGFVLPSYKPGVKLVNLGE---SLPDYAIAALREAIPAFDKKI 466
Query: 394 PGVASDHTLLYAPEIKYYA-MRVEVNELLET-SIENVFAAGDGAGLSRDIVNAAATGIMA 451
G A D +L E + + +R++ + ++ + ++ AG+GAG + I++A GI
Sbjct: 467 RGFAMDDAVLTGVETRTSSPIRIKRGDDFQSINTVGLYPAGEGAGYAGGILSAGIDGIKV 526
Query: 452 ARGI 455
A I
Sbjct: 527 AEAI 530
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196145100
Number of Sequences: 2977
Number of extensions: 8681220
Number of successful extensions: 23232
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23197
Number of HSP's gapped (non-prelim): 10
length of query: 484
length of database: 189,106,746
effective HSP length: 55
effective length of query: 429
effective length of database: 156,189,961
effective search space: 67005493269
effective search space used: 67005493269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)