BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1095 (PAB1095) DE:Hypothetical protein
         (756 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75016 hypothetical protein PAB1095 - Pyrococcus abyssi (st...  1544  0.0

>pir||H75016 hypothetical protein PAB1095 - Pyrococcus abyssi (strain Orsay)
           >gi|5459088|emb|CAB50574.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 756
           
 Score = 1544 bits (3955), Expect = 0.0
 Identities = 756/756 (100%), Positives = 756/756 (100%)

Query: 1   MKRKLYYLTLATISVIEYIPLYLAPSPPALQINGNGHLFKVHKLMTSGWKPWIEDWYAGY 60
           MKRKLYYLTLATISVIEYIPLYLAPSPPALQINGNGHLFKVHKLMTSGWKPWIEDWYAGY
Sbjct: 1   MKRKLYYLTLATISVIEYIPLYLAPSPPALQINGNGHLFKVHKLMTSGWKPWIEDWYAGY 60

Query: 61  PFLRFYPPLSYLTAGVLGKVLGSDTKGYAATLMLTSFLGALALHHYLKSTGREPCISPLI 120
           PFLRFYPPLSYLTAGVLGKVLGSDTKGYAATLMLTSFLGALALHHYLKSTGREPCISPLI
Sbjct: 61  PFLRFYPPLSYLTAGVLGKVLGSDTKGYAATLMLTSFLGALALHHYLKSTGREPCISPLI 120

Query: 121 FLLFPWHLTVSYIEGNFPRANAIHLAPLFLLSLYWLREKRERYLIASALGISIVALTHYS 180
           FLLFPWHLTVSYIEGNFPRANAIHLAPLFLLSLYWLREKRERYLIASALGISIVALTHYS
Sbjct: 121 FLLFPWHLTVSYIEGNFPRANAIHLAPLFLLSLYWLREKRERYLIASALGISIVALTHYS 180

Query: 181 ILPLLIITGILILWDDLRTMTALGNGIKVLGAVIGLTSFWYVPFLFDKKWVEFWNISENK 240
           ILPLLIITGILILWDDLRTMTALGNGIKVLGAVIGLTSFWYVPFLFDKKWVEFWNISENK
Sbjct: 181 ILPLLIITGILILWDDLRTMTALGNGIKVLGAVIGLTSFWYVPFLFDKKWVEFWNISENK 240

Query: 241 ALFKSFSLNPTLLKSPFGILLILLLLIFAIFAIKNLVDRKKVILAGLYLYLSLGFYSPTT 300
           ALFKSFSLNPTLLKSPFGILLILLLLIFAIFAIKNLVDRKKVILAGLYLYLSLGFYSPTT
Sbjct: 241 ALFKSFSLNPTLLKSPFGILLILLLLIFAIFAIKNLVDRKKVILAGLYLYLSLGFYSPTT 300

Query: 301 WLYSFPLLSIVPPYRWFDLEALIIPLLIGESLKRVQRKSMVALVIIPFTVLAFMNVPKIN 360
           WLYSFPLLSIVPPYRWFDLEALIIPLLIGESLKRVQRKSMVALVIIPFTVLAFMNVPKIN
Sbjct: 301 WLYSFPLLSIVPPYRWFDLEALIIPLLIGESLKRVQRKSMVALVIIPFTVLAFMNVPKIN 360

Query: 361 PYPQDLIKICENIKEEPGDDWRIFVLTDVGEAINSYLPAICKKPTLNGWYHEGSPTKAGE 420
           PYPQDLIKICENIKEEPGDDWRIFVLTDVGEAINSYLPAICKKPTLNGWYHEGSPTKAGE
Sbjct: 361 PYPQDLIKICENIKEEPGDDWRIFVLTDVGEAINSYLPAICKKPTLNGWYHEGSPTKAGE 420

Query: 421 RRMIYILTYGGNLTPYLKAYAVRFLITPKEINGYEMVLRIGKYKVYKGDTSFFQPVSVIV 480
           RRMIYILTYGGNLTPYLKAYAVRFLITPKEINGYEMVLRIGKYKVYKGDTSFFQPVSVIV
Sbjct: 421 RRMIYILTYGGNLTPYLKAYAVRFLITPKEINGYEMVLRIGKYKVYKGDTSFFQPVSVIV 480

Query: 481 MGKYYELPFDFVYIKDTKIISGQPNVVVLYIGQPSKEEESMLWKFIKNGGTVIWVPETKG 540
           MGKYYELPFDFVYIKDTKIISGQPNVVVLYIGQPSKEEESMLWKFIKNGGTVIWVPETKG
Sbjct: 481 MGKYYELPFDFVYIKDTKIISGQPNVVVLYIGQPSKEEESMLWKFIKNGGTVIWVPETKG 540

Query: 541 EFLGIKAEIRAISNDELRSSLFNVSRFSPFSYNHRSWYAPVFSSNIVRPLISVGNYTLIG 600
           EFLGIKAEIRAISNDELRSSLFNVSRFSPFSYNHRSWYAPVFSSNIVRPLISVGNYTLIG
Sbjct: 541 EFLGIKAEIRAISNDELRSSLFNVSRFSPFSYNHRSWYAPVFSSNIVRPLISVGNYTLIG 600

Query: 601 EVRIGNGTLYLAGGNLIFHALSYKSSYEISIIRALIGNMDKSTIVNYKLLERSDGRLVAE 660
           EVRIGNGTLYLAGGNLIFHALSYKSSYEISIIRALIGNMDKSTIVNYKLLERSDGRLVAE
Sbjct: 601 EVRIGNGTLYLAGGNLIFHALSYKSSYEISIIRALIGNMDKSTIVNYKLLERSDGRLVAE 660

Query: 661 INSTERTLIRVSEAYYPYWKGYINGREVRLFRDYRTGLMIFTFPRNGTLVIEFKDPFLPL 720
           INSTERTLIRVSEAYYPYWKGYINGREVRLFRDYRTGLMIFTFPRNGTLVIEFKDPFLPL
Sbjct: 661 INSTERTLIRVSEAYYPYWKGYINGREVRLFRDYRTGLMIFTFPRNGTLVIEFKDPFLPL 720

Query: 721 RRYSLVGWIILTAYLVIETGKTYKKRYLHSIFEGRR 756
           RRYSLVGWIILTAYLVIETGKTYKKRYLHSIFEGRR
Sbjct: 721 RRYSLVGWIILTAYLVIETGKTYKKRYLHSIFEGRR 756


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.144    0.444 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299491999
Number of Sequences: 2977
Number of extensions: 13600881
Number of successful extensions: 38783
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38782
Number of HSP's gapped (non-prelim): 1
length of query: 756
length of database: 189,106,746
effective HSP length: 52
effective length of query: 704
effective length of database: 157,985,422
effective search space: 111221737088
effective search space used: 111221737088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 169 (70.2 bits)