BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1096 (PAB1096) DE:Hypothetical protein
         (151 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75017 hypothetical protein PAB1096 - Pyrococcus abyssi (st...   300  4e-81
pir||D71455 hypothetical protein PH0298 - Pyrococcus horikoshii ...   221  3e-57

>pir||A75017 hypothetical protein PAB1096 - Pyrococcus abyssi (strain Orsay)
           >gi|5459089|emb|CAB50575.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 151
           
 Score =  300 bits (761), Expect = 4e-81
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MDKKIASLAVVLVVVLVVAVRTAEIPPATIVGSAEIFMVNNTTATIVEKDGWGLFTLTVK 60
           MDKKIASLAVVLVVVLVVAVRTAEIPPATIVGSAEIFMVNNTTATIVEKDGWGLFTLTVK
Sbjct: 1   MDKKIASLAVVLVVVLVVAVRTAEIPPATIVGSAEIFMVNNTTATIVEKDGWGLFTLTVK 60

Query: 61  PKITGFTLRLEFPQGTTYLIKINGKEIKGKDVFETKISQDSEIIVSFQLPKEDTRKLYSG 120
           PKITGFTLRLEFPQGTTYLIKINGKEIKGKDVFETKISQDSEIIVSFQLPKEDTRKLYSG
Sbjct: 61  PKITGFTLRLEFPQGTTYLIKINGKEIKGKDVFETKISQDSEIIVSFQLPKEDTRKLYSG 120

Query: 121 EGQYYIKVKASKMPFWNSEYVIYLLPREKKD 151
           EGQYYIKVKASKMPFWNSEYVIYLLPREKKD
Sbjct: 121 EGQYYIKVKASKMPFWNSEYVIYLLPREKKD 151


>pir||D71455 hypothetical protein PH0298 - Pyrococcus horikoshii
           >gi|3256688|dbj|BAA29371.1| (AP000001) 154aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 154
           
 Score =  221 bits (557), Expect = 3e-57
 Identities = 100/150 (66%), Positives = 129/150 (85%)

Query: 1   MDKKIASLAVVLVVVLVVAVRTAEIPPATIVGSAEIFMVNNTTATIVEKDGWGLFTLTVK 60
           MDKKI +LAV+LV VLV A++TA IPPA + GSAEIF++NN T TIVEKDGWGLFTLT+K
Sbjct: 4   MDKKIVTLAVILVAVLVYAMKTASIPPAYVEGSAEIFLMNNKTVTIVEKDGWGLFTLTIK 63

Query: 61  PKITGFTLRLEFPQGTTYLIKINGKEIKGKDVFETKISQDSEIIVSFQLPKEDTRKLYSG 120
           PKI+ FTL +EFP+GT YLIK NGKE++G++ F TKIS ++E+IV+FQLPK+ T +LY  
Sbjct: 64  PKISDFTLEIEFPEGTKYLIKKNGKELRGENTFSTKISGNTELIVNFQLPKDKTERLYRE 123

Query: 121 EGQYYIKVKASKMPFWNSEYVIYLLPREKK 150
           EG+YYIK+K +K+PFWN+EY IYL+PR++K
Sbjct: 124 EGEYYIKIKTTKLPFWNAEYTIYLIPRKEK 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52036005
Number of Sequences: 2977
Number of extensions: 2028791
Number of successful extensions: 5487
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5485
Number of HSP's gapped (non-prelim): 2
length of query: 151
length of database: 189,106,746
effective HSP length: 55
effective length of query: 96
effective length of database: 156,189,961
effective search space: 14994236256
effective search space used: 14994236256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)