BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1102 (PAB1102) DE:Hypothetical protein
(899 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75018 hypothetical protein PAB1102 - Pyrococcus abyssi (st... 1785 0.0
pir||G71453 hypothetical protein PH0286 - Pyrococcus horikoshii ... 1520 0.0
sp|Q58956|YF61_METJA HYPOTHETICAL PROTEIN MJ1561 >gi|2128937|pir... 196 9e-49
gb|AAG19779.1| (AE005063) Vng1475c [Halobacterium sp. NRC-1] 75 3e-12
>pir||B75018 hypothetical protein PAB1102 - Pyrococcus abyssi (strain Orsay)
>gi|5459098|emb|CAB50584.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 899
Score = 1785 bits (4572), Expect = 0.0
Identities = 899/899 (100%), Positives = 899/899 (100%)
Query: 1 MKKAMALILGLILGSLVQPSLAQGPELLYEGYMNKGDYLLVGPLMILLKDVVYDINDGKW 60
MKKAMALILGLILGSLVQPSLAQGPELLYEGYMNKGDYLLVGPLMILLKDVVYDINDGKW
Sbjct: 1 MKKAMALILGLILGSLVQPSLAQGPELLYEGYMNKGDYLLVGPLMILLKDVVYDINDGKW 60
Query: 61 KGVFIVFNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFL 120
KGVFIVFNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFL
Sbjct: 61 KGVFIVFNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFL 120
Query: 121 RWLSTASQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVY 180
RWLSTASQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVY
Sbjct: 121 RWLSTASQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVY 180
Query: 181 ITVLSAYPNGVKVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLKNIGSRKV 240
ITVLSAYPNGVKVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLKNIGSRKV
Sbjct: 181 ITVLSAYPNGVKVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLKNIGSRKV 240
Query: 241 RFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQGTLYPVESSVKFIDLIEPG 300
RFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQGTLYPVESSVKFIDLIEPG
Sbjct: 241 RFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQGTLYPVESSVKFIDLIEPG 300
Query: 301 EDKVIKFLYKVNENAKPGDYPLYLTVIYFAYTTGENLEQRTLYDTAVVTVARDYEANFII 360
EDKVIKFLYKVNENAKPGDYPLYLTVIYFAYTTGENLEQRTLYDTAVVTVARDYEANFII
Sbjct: 301 EDKVIKFLYKVNENAKPGDYPLYLTVIYFAYTTGENLEQRTLYDTAVVTVARDYEANFII 360
Query: 361 VQNVPRIVHPGEDFTINVTFKNMGEDPAKDVRGTLILEDITGRVFTPVSPSNFYRKFVDP 420
VQNVPRIVHPGEDFTINVTFKNMGEDPAKDVRGTLILEDITGRVFTPVSPSNFYRKFVDP
Sbjct: 361 VQNVPRIVHPGEDFTINVTFKNMGEDPAKDVRGTLILEDITGRVFTPVSPSNFYRKFVDP 420
Query: 421 GMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAFIEIDN 480
GMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAFIEIDN
Sbjct: 421 GMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAFIEIDN 480
Query: 481 VTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLSQLSNLPIP 540
VTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLSQLSNLPIP
Sbjct: 481 VTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLSQLSNLPIP 540
Query: 541 GGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHFTLKANERL 600
GGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHFTLKANERL
Sbjct: 541 GGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHFTLKANERL 600
Query: 601 ENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILPGTSNVEIS 660
ENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILPGTSNVEIS
Sbjct: 601 ENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILPGTSNVEIS 660
Query: 661 FKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKVDVDENAKSG 720
FKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKVDVDENAKSG
Sbjct: 661 FKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKVDVDENAKSG 720
Query: 721 RYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNV 780
RYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNV
Sbjct: 721 RYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNV 780
Query: 781 GGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNPNQTGEGVITLSIEKDAVPKVYNILIR 840
GGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNPNQTGEGVITLSIEKDAVPKVYNILIR
Sbjct: 781 GGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNPNQTGEGVITLSIEKDAVPKVYNILIR 840
Query: 841 MRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAIGAGILAIVITLLTYFKRRH 899
MRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAIGAGILAIVITLLTYFKRRH
Sbjct: 841 MRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAIGAGILAIVITLLTYFKRRH 899
>pir||G71453 hypothetical protein PH0286 - Pyrococcus horikoshii
>gi|3256675|dbj|BAA29358.1| (AP000001) 899aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 899
Score = 1520 bits (3891), Expect = 0.0
Identities = 727/898 (80%), Positives = 831/898 (91%)
Query: 1 MKKAMALILGLILGSLVQPSLAQGPELLYEGYMNKGDYLLVGPLMILLKDVVYDINDGKW 60
MKK +++ LIL + + SLAQGPELLYEGYMNKGDYLLVGPL I LKDVVYDINDGKW
Sbjct: 1 MKKLSYILILLILTAPLPLSLAQGPELLYEGYMNKGDYLLVGPLTIFLKDVVYDINDGKW 60
Query: 61 KGVFIVFNEDMEPIGPNLTLIYVPDPQKVRTLLQNQTFLRAMAETLGYNPDNPIEYAEFL 120
K +FIVFNEDMEP+GPNLTLIYVPDP KV+ LLQNQTFLRAMAETLGYNPDNPIEYAEFL
Sbjct: 61 KALFIVFNEDMEPVGPNLTLIYVPDPNKVQNLLQNQTFLRAMAETLGYNPDNPIEYAEFL 120
Query: 121 RWLSTASQMEIWNAIVKTIDEHPELGIRLEDISKPYYVPNARPVGVNETIKIEYRGKTVY 180
RWLSTASQME+WNAIVKTI+EHPELGI+L+DI+KPYYVPNARPVGVNETIKIEYRGKTVY
Sbjct: 121 RWLSTASQMEVWNAIVKTIEEHPELGIKLQDIAKPYYVPNARPVGVNETIKIEYRGKTVY 180
Query: 181 ITVLSAYPNGVKVSISGPIQWRASMVQGLLLSKIDVKGTIKPGQYFTVEVHLKNIGSRKV 240
ITVL+ YPNG +VSISGP+QWRASMVQGLLLS+I+VKGT+KPGQ+F V VHLKNIGSRKV
Sbjct: 181 ITVLNTYPNGARVSISGPVQWRASMVQGLLLSRIEVKGTVKPGQFFNVNVHLKNIGSRKV 240
Query: 241 RFVTAVLSPTPVVPSSTKFKTEEESLATTVPQVLTQTGTIQGTLYPVESSVKFIDLIEPG 300
RFVT +LSPTPVVP+ + T EES+ATT+PQVLTQTGTIQGTLYPVESSVKFID+IEPG
Sbjct: 241 RFVTVILSPTPVVPNVARSHTGEESIATTIPQVLTQTGTIQGTLYPVESSVKFIDIIEPG 300
Query: 301 EDKVIKFLYKVNENAKPGDYPLYLTVIYFAYTTGENLEQRTLYDTAVVTVARDYEANFII 360
EDKVI FLYKVNENAKPGDYPLYLTV+YF+YTTGENLEQR YDTA+VTV+RD+EANF+I
Sbjct: 301 EDKVITFLYKVNENAKPGDYPLYLTVVYFSYTTGENLEQRVSYDTAIVTVSRDHEANFVI 360
Query: 361 VQNVPRIVHPGEDFTINVTFKNMGEDPAKDVRGTLILEDITGRVFTPVSPSNFYRKFVDP 420
Q VPRIVHPG+DFTI + F+N+GED AKDVRG LILED+TGRVF+PVSPS FY KFVDP
Sbjct: 361 TQEVPRIVHPGDDFTIKLKFRNLGEDTAKDVRGELILEDLTGRVFSPVSPSTFYLKFVDP 420
Query: 421 GMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAFIEIDN 480
G EFN+TFKLHVSESAKTGTY FK+RLKYYSG+SN+EKTQ+FTISTT+IRRREAFIEI+N
Sbjct: 421 GEEFNKTFKLHVSESAKTGTYVFKVRLKYYSGDSNKEKTQEFTISTTIIRRREAFIEIEN 480
Query: 481 VTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLSQLSNLPIP 540
VT+ P+K+EPG TF + L+NVGEGYAK LE+RI+PT+ LVRREIKKVDLSQLSNLPIP
Sbjct: 481 VTIEPKKVEPGMTFRVVFTLKNVGEGYAKALEIRIIPTETLVRREIKKVDLSQLSNLPIP 540
Query: 541 GGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHFTLKANERL 600
GG+EL+KNLQTA NQ++ QIAQE V AFLPIGEDNV+Y+G+I PNQT+++ FTLKANERL
Sbjct: 541 GGQELSKNLQTAFNQIVEQIAQERVPAFLPIGEDNVRYDGLITPNQTMKVEFTLKANERL 600
Query: 601 ENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILPGTSNVEIS 660
ENNIYP+KIE+KYLSSPDD+LISDERIIGIDVTG EKLVI+S+STSPSRILPGTSNVEIS
Sbjct: 601 ENNIYPLKIELKYLSSPDDRLISDERIIGIDVTGIEKLVITSVSTSPSRILPGTSNVEIS 660
Query: 661 FKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKVDVDENAKSG 720
F +ENVGDGKADYI+++PNP+FPFKLSETS+QIIN+GSLGKGDSA+ASFKVDVDENA SG
Sbjct: 661 FTLENVGDGKADYILLIPNPRFPFKLSETSNQIINIGSLGKGDSARASFKVDVDENATSG 720
Query: 721 RYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKPKLVITDVRFGEKPVQGKDVNIYITVKNV 780
RY IP+T+EY+DP+G FR + V +P+IIAEKPKLVIT+VRFG +P+QGKDVN+Y+TVKN+
Sbjct: 721 RYYIPITMEYRDPSGNFRVLNVTLPIIIAEKPKLVITNVRFGSEPLQGKDVNVYVTVKNI 780
Query: 781 GGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNPNQTGEGVITLSIEKDAVPKVYNILIR 840
GGEQAESV IEGVVRSSQPFTLVKRTDYIGTL+P ++GEGVITLSIEKDA+PKVYNILIR
Sbjct: 781 GGEQAESVTIEGVVRSSQPFTLVKRTDYIGTLDPGKSGEGVITLSIEKDALPKVYNILIR 840
Query: 841 MRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAIGAGILAIVITLLTYFKRR 898
+RAVGDKEKGDDNVY+FE T+K+PVKEN ES ++L+ LA+ AGILAI+IT++TY KRR
Sbjct: 841 IRAVGDKEKGDDNVYIFEETVKIPVKENVESAKRLKILALVAGILAILITIITYLKRR 898
>sp|Q58956|YF61_METJA HYPOTHETICAL PROTEIN MJ1561 >gi|2128937|pir||H64494 hypothetical
protein MJ1561 - Methanococcus jannaschii
>gi|1592185|gb|AAB99582.1| (U67596) M. jannaschii
predicted coding region MJ1561 [Methanococcus
jannaschii]
Length = 553
Score = 196 bits (493), Expect = 9e-49
Identities = 161/549 (29%), Positives = 253/549 (45%), Gaps = 39/549 (7%)
Query: 362 QNVPRIVHPGEDFTINVTFKNMGEDPAKDVRGTLILED----ITGRVFTPVSPSNFYRKF 417
Q P ++HPG+D + + N D +V+ ++ R P+
Sbjct: 28 QYQPNVIHPGDDVDLWIKITNDNYD--NEVKNIVVEVSPHYPFELRQVNPIKGKATI-SH 84
Query: 418 VDPGMEFNETFKLHVSESAKTGTYTFKIRLKYYSGNSNQEKTQDFTISTTVIRRREAF-- 475
++PG FKLHV E+A + Y +++ Y N K T I +
Sbjct: 85 LNPGESDTVYFKLHVDENAPSRDYEIDVKVSYDEINKEDGKETIHHYEITKIYYLHVYGI 144
Query: 476 --IEID-NVTLTPEKIEPGTTFNITLRLRNVGEGYAKGLEVRIVPTKALVRREIKKVDLS 532
EI+ N +L P K T + + + N G G AK + + I + V + V++S
Sbjct: 145 ASFEINGNFSLIPSK-----TQTVPIEIINTGTGTAKEVNLYIGYSLNSVNAGSESVEVS 199
Query: 533 QLSNLPIPGGKELAKNLQTALNQVIGQIAQEEVSAFLPIGEDNVKYNGVIMPNQTIEIHF 592
+E TA+ I+ +S P+GE Y G + P+ + I+
Sbjct: 200 AYGTTKT---QEKTIYYPTAV-----PISNLPIS---PVGETKF-YLGALKPDNSRVINL 247
Query: 593 TLKANERLENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEKLVISSISTSPSRILP 652
L L Y I I ++ K +++ IG V G L IS++ T P I P
Sbjct: 248 KLYTASNLVEGCYQIPAVITWIDEDGTKR-AEQITIGAYVKGDILLGISNVVTDPKEIKP 306
Query: 653 GTSNVEISFKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVGSLGKGDSAQASFKVD 712
GT+ V I I N G +A + + PFK S ++ I +VG+L G S SF VD
Sbjct: 307 GTTYVRIDVTITNNGHAEAKDVKLKLITNKPFKDSWSNCNIKDVGNLLPGVSKTVSFYVD 366
Query: 713 VDENAKSGRYLIPLTIEYKDPTGKFRQIEVNIPVIIAEKP--KLVITDVRFGEKPVQGKD 770
VD+ A + Y +P+ I Y D + E I + + KP +++ +V GK+
Sbjct: 367 VDKYASAKHYKLPIEISYLDTANNKYKTEKFIDIYVKPKPLFEIITKEVNV----TAGKE 422
Query: 771 VNIYITVKNVGGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNPNQTGEGVITLSIEKDA 830
+YIT+KNVG E+AE V I + S QPF ++D IGTL PNQTG GVI + ++K+A
Sbjct: 423 NTVYITIKNVGSEKAERVKISAIRNSGQPFDYPIKSDTIGTLYPNQTGTGVIVIDVDKNA 482
Query: 831 VPKVYNILIRMRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEKLRNLAIGAGILAIVIT 890
K Y I I +R GD ++GD+NVYV++ +KV V + + + + ++AIV+
Sbjct: 483 ESKPYIITIEIRCAGDSDEGDNNVYVYQEPLKVVVNNSNSKSYWILGIIV---VIAIVLV 539
Query: 891 LLTYFKRRH 899
+ FKR++
Sbjct: 540 VGYVFKRKN 548
>gb|AAG19779.1| (AE005063) Vng1475c [Halobacterium sp. NRC-1]
Length = 551
Score = 75.3 bits (182), Expect = 3e-12
Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 15/323 (4%)
Query: 578 YNGVIMPNQTIEIHFTLKANERLENNIYPIKIEIKYLSSPDDKLISDERIIGIDVTGSEK 637
Y + P +T I + A + YPI + Y +S SD G+ V
Sbjct: 241 YIPALDPGETANISAKVGAESNADAGDYPINAVVAYTNSNGVTRKSDSLTAGVSVQPERT 300
Query: 638 LVISSISTSPSRILPGTSNVEISFKIENVGDGKADYIIIMPNPQFPFKLSETSDQIINVG 697
+ ++ T R+ S+ EI +I N G G A+ + + E ++ VG
Sbjct: 301 FELRNVDTEKFRV--DESDAEIHGEIVNTGSGSANNVAVRLGS---IPGIEPTNGESAVG 355
Query: 698 SLGKGDSAQASFKVDVDENAKSGRYLIPLTIEYKDPTGKFRQIE--VNIPVII-AEKPKL 754
L G+S SF V + +A+ G P +EY++ G R I + P+ I AE+
Sbjct: 356 DLAPGESKPVSFTVAIPGSAEPGSNSFPFNVEYENDNGDVRTISSPLRQPLEIGAEQDPF 415
Query: 755 VITDVRFGEKPVQGKDVNIYITVKNVGGEQAESVVIEGVVRSSQPFTLVKRTDYIGTLNP 814
+ +V P G + ++++ G E + + V S P + Y+G L P
Sbjct: 416 EVVNVSTSVSP--GGSDTVAVSLRYQGDEPVSAANAKLFV--SDPLSTSDDGAYLGELQP 471
Query: 815 NQTGEGVITLSIEKDAVPKVYNILIRMRAVGDKEKGDDNVYVFEGTIKVPVKENTESKEK 874
+T T S + A+ K Y+ + +R E D Y T+ VPV +
Sbjct: 472 GETTTATFTASADSAAITKEYDASVEVRY---DEPDGDTKYTDGLTVGVPVSPQSGGLPV 528
Query: 875 LRNLAIGAGILAIVITLLTYFKR 897
+ IG ++ + + Y +R
Sbjct: 529 PLPVIIGLVVVVAGVGYVLYQRR 551
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335050296
Number of Sequences: 2977
Number of extensions: 14989331
Number of successful extensions: 33338
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33283
Number of HSP's gapped (non-prelim): 9
length of query: 899
length of database: 189,106,746
effective HSP length: 61
effective length of query: 838
effective length of database: 152,599,039
effective search space: 127877994682
effective search space used: 127877994682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)