BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1103 (PAB1103) DE:Endonuclease IV related protein
(281 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75018 endonuclease iv related protein PAB1103 - Pyrococcus... 566 e-160
pir||G71204 hypothetical protein PH1905 - Pyrococcus horikoshii ... 518 e-146
sp|Q57597|Y133_METJA HYPOTHETICAL PROTEIN MJ0133 >gi|2128144|pir... 248 5e-65
gb|AAK42332.1| Endonuclease IV related protein [Sulfolobus solfa... 173 2e-42
pir||S74063 hypothetical protein c0132 - Sulfolobus solfataricus... 173 2e-42
pir||C72516 hypothetical protein APE2104 - Aeropyrum pernix (str... 171 8e-42
pir||G69001 endonuclease IV - Methanobacterium thermoautotrophic... 162 5e-39
>pir||E75018 endonuclease iv related protein PAB1103 - Pyrococcus abyssi
(strain Orsay) >gi|5459101|emb|CAB50587.1| (AJ248288)
Endonuclease IV related protein [Pyrococcus abyssi]
Length = 281
Score = 566 bits (1443), Expect = e-160
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVA 60
MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVA
Sbjct: 1 MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVA 60
Query: 61 KKNDVVLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPE 120
KKNDVVLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPE
Sbjct: 61 KKNDVVLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPE 120
Query: 121 LVYERIKSELKDIEKELLDRGIKVWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFA 180
LVYERIKSELKDIEKELLDRGIKVWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFA
Sbjct: 121 LVYERIKSELKDIEKELLDRGIKVWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFA 180
Query: 181 HAHARNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDM 240
HAHARNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDM
Sbjct: 181 HAHARNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDM 240
Query: 241 RWEELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEELKI 281
RWEELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEELKI
Sbjct: 241 RWEELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEELKI 281
>pir||G71204 hypothetical protein PH1905 - Pyrococcus horikoshii
>gi|3258347|dbj|BAA31030.1| (AP000007) 281aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 281
Score = 518 bits (1321), Expect = e-146
Identities = 249/281 (88%), Positives = 272/281 (96%)
Query: 1 MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVA 60
MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIK+VA
Sbjct: 1 MFKIDRLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKYVA 60
Query: 61 KKNDVVLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPE 120
+KND+VLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWS+VFHAGYYLKQP E
Sbjct: 61 EKNDIVLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSVVFHAGYYLKQPKE 120
Query: 121 LVYERIKSELKDIEKELLDRGIKVWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFA 180
VY++I S LK+I+KEL+D+GIKVW+RPELTGKPTQFG+L EL++LSQ+LELVLPAIDFA
Sbjct: 121 SVYQKILSALKEIQKELMDKGIKVWLRPELTGKPTQFGDLKELVKLSQELELVLPAIDFA 180
Query: 181 HAHARNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDM 240
HAHARNKGKCN+EEEWREML LIE ELGREALDNMHIHISGIEY +KGEKRHLNL+ESD+
Sbjct: 181 HAHARNKGKCNTEEEWREMLALIENELGREALDNMHIHISGIEYGEKGEKRHLNLEESDL 240
Query: 241 RWEELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEELKI 281
+WE+LLK LKEF+VKGV+ISESPNIEGDAILMKKKWEELKI
Sbjct: 241 KWEDLLKVLKEFRVKGVIISESPNIEGDAILMKKKWEELKI 281
>sp|Q57597|Y133_METJA HYPOTHETICAL PROTEIN MJ0133 >gi|2128144|pir||E64316 hypothetical
protein MJ0133 - Methanococcus jannaschii
>gi|1498901|gb|AAB98114.1| (U67470) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 273
Score = 248 bits (627), Expect = 5e-65
Identities = 131/273 (47%), Positives = 186/273 (67%), Gaps = 6/273 (2%)
Query: 7 LRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVAKKNDVV 66
L FGTAG+PIS ++ +R+L L AMELEFV+G+ +K + AKK+K + D++
Sbjct: 7 LIFGTAGVPISAE--DEFKAVDVLRKLNLGAMELEFVKGVYMKEDYAKKLKEYGE--DII 62
Query: 67 LTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPELVYERI 126
+AHAP+YINLNA E+EKVE S RRII++A+ L G +LVFH GYYLK+ E+ Y RI
Sbjct: 63 FSAHAPHYINLNANEEEKVENSIRRIIKTAKVLNNCGK-NLVFHPGYYLKRSKEVTYNRI 121
Query: 127 KSELKDIEKELLDRGIKVWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFAHAHARN 186
KS ++ I +L + V +RPE TGK TQFG++ E ++L +L +LP IDF+H +AR+
Sbjct: 122 KSNIQRILDKLEALNLNVMLRPETTGKTTQFGDIDETLKLCFELN-ILPCIDFSHIYARS 180
Query: 187 KGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDMRWEELL 246
+G N + ++L +E LG+EA+ +MHIH+SGIEY GE+RHL L ES+ + ++L
Sbjct: 181 RGVINDYNSFYKILEKVENVLGKEAIKDMHIHLSGIEYGKGGERRHLPLNESNFNYRDVL 240
Query: 247 KTLKEFKVKGVVISESPNIEGDAILMKKKWEEL 279
K LK+F G VI ESP +E DA+L+ K + EL
Sbjct: 241 KALKDFDASGTVICESPMLEYDAVLLMKCYNEL 273
>gb|AAK42332.1| Endonuclease IV related protein [Sulfolobus solfataricus]
Length = 283
Score = 173 bits (434), Expect = 2e-42
Identities = 102/276 (36%), Positives = 164/276 (58%), Gaps = 9/276 (3%)
Query: 6 RLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVAKKNDV 65
++ G AG+P S K +T+ GI V+ELGL+AME+EFV+G+ + E A++ VA++ V
Sbjct: 10 KIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEETGQVARELGV 69
Query: 66 VLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPELVYER 125
L+ HAPY+INL ++EKEK+EASK+RI+ +A+R G ++ H +Y K PE Y+
Sbjct: 70 RLSVHAPYFINLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECYQN 129
Query: 126 IKSELKDIEKELLDRGIK-VWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFAHAHA 184
+K L+++ + + GI+ V E K T FG L E+I +S++L+ V+P ID+AH A
Sbjct: 130 VKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKGVIPYIDWAHTFA 189
Query: 185 RNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEY-SDKGEKRHLNLQESDMRWE 243
R G E ++ +++ + KELG L +++ H + Y K H+ + + +E
Sbjct: 190 RQGG----EIDYGKIIDRLIKELG---LTHINSHFESLVYRRGKYVDEHIPIDANAPPFE 242
Query: 244 ELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEEL 279
L K L + + +I ESP +E DA+ MK+ E L
Sbjct: 243 PLAKELLKRDISITLICESPELERDALKMKEVLERL 278
>pir||S74063 hypothetical protein c0132 - Sulfolobus solfataricus
>gi|1707762|emb|CAA69434.1| (Y08256) orf c01032
[Sulfolobus solfataricus]
Length = 283
Score = 173 bits (434), Expect = 2e-42
Identities = 102/276 (36%), Positives = 164/276 (58%), Gaps = 9/276 (3%)
Query: 6 RLRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVAKKNDV 65
++ G AG+P S K +T+ GI V+ELGL+AME+EFV+G+ + E A++ VA++ V
Sbjct: 10 KIYLGPAGVPHSAKKKNTVEGIRTVKELGLNAMEVEFVQGVRMSKETAEETGQVARELGV 69
Query: 66 VLTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPELVYER 125
L+ HAPY+INL ++EKEK+EASK+RI+ +A+R G ++ H +Y K PE Y+
Sbjct: 70 RLSVHAPYFINLCSEEKEKIEASKQRILDTADRAELMGADAIAIHIAFYGKMTPEECYQN 129
Query: 126 IKSELKDIEKELLDRGIK-VWIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFAHAHA 184
+K L+++ + + GI+ V E K T FG L E+I +S++L+ V+P ID+AH A
Sbjct: 130 VKEGLEEVIDKAREMGIRNVKFGVETMAKETAFGTLDEVISISKELKGVIPYIDWAHTFA 189
Query: 185 RNKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEY-SDKGEKRHLNLQESDMRWE 243
R G E ++ +++ + KELG L +++ H + Y K H+ + + +E
Sbjct: 190 RQGG----EIDYGKIIDRLIKELG---LTHINSHFESLVYRRGKYVDEHIPIDANAPPFE 242
Query: 244 ELLKTLKEFKVKGVVISESPNIEGDAILMKKKWEEL 279
L K L + + +I ESP +E DA+ MK+ E L
Sbjct: 243 PLAKELLKRDISITLICESPELERDALKMKEVLERL 278
>pir||C72516 hypothetical protein APE2104 - Aeropyrum pernix (strain K1)
>gi|5105803|dbj|BAA81115.1| (AP000063) 285aa long
hypothetical protein [Aeropyrum pernix]
Length = 285
Score = 171 bits (429), Expect = 8e-42
Identities = 105/273 (38%), Positives = 154/273 (55%), Gaps = 9/273 (3%)
Query: 7 LRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVAKKNDVV 66
+RFG AG P+ K + E +R +GLDA+E E VRG+ I A+++ A++N V+
Sbjct: 9 IRFGPAGKPVEF-KGDIVKVPEFLRSIGLDALEYEAVRGVRISEAKARRLGEAARENGVI 67
Query: 67 LTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYY--LKQPPELVYE 124
L+ HAPYY+NL++ + VE S +R+ S G +++V H GYY LK E V
Sbjct: 68 LSMHAPYYVNLSSPDDSVVERSIKRLYDSMIASEWMGSYAVVVHPGYYKGLKSREEAVKR 127
Query: 125 RIKSELKDIEKELLDRGIKV-WIRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFAHAH 183
I++ + IE L +K WI PE GK +Q G+L E + + + P +D+AH +
Sbjct: 128 VIEALNRLIES--LPSWVKTPWIAPETMGKQSQVGSLEETVEICLNTPRCRPCVDWAHLY 185
Query: 184 ARNKGK-CNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQESDM-- 240
AR +GK S ++ + + IE LGREA+D +H H S IEY GE+ H L+E
Sbjct: 186 ARAEGKFVTSVDQVVKAIEYIESNLGREAVDPLHTHFSKIEYGKGGERMHHTLREEGYGP 245
Query: 241 RWEELLKTLKEFKVKGVVISESPNIEGDAILMK 273
W + + KE + VVISESP +E DA+LMK
Sbjct: 246 DWRIVCRAYKETGINAVVISESPILEKDALLMK 278
>pir||G69001 endonuclease IV - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622112|gb|AAB85506.1| (AE000874)
endonuclease IV [Methanobacterium thermoautotrophicum]
Length = 279
Score = 162 bits (405), Expect = 5e-39
Identities = 96/269 (35%), Positives = 150/269 (55%), Gaps = 6/269 (2%)
Query: 7 LRFGTAGIPISTPKPSTIAGIERVRELGLDAMELEFVRGINIKPELAKKIKHVAKKNDVV 66
+R G AG P+ + ST+ ++R +GLDA E + G+ +K E A +I ++KND++
Sbjct: 6 IRVGPAGNPVGY-RGSTVNVFSKIRAMGLDAYEYQATYGLRLKKENAIRIGENSRKNDIL 64
Query: 67 LTAHAPYYINLNAKEKEKVEASKRRIIQSAERLYEAGGWSLVFHAGYYLKQPPELVYERI 126
++ H PYYINL++ KE VE S R+ A G + +VFH G+Y +
Sbjct: 65 VSMHGPYYINLSSARKETVEKSIERLFDCAVAAELMGAYRIVFHPGFYGEHGRSGALGLC 124
Query: 127 KSELKDIEKELLDRGIKVW-IRPELTGKPTQFGNLMELIRLSQDLELVLPAIDFAHAHAR 185
L ++ + L GI+ + + PE TGK +Q G+L E+I+LS++ + V+P IDFAH HAR
Sbjct: 125 IKALDELIERLHGAGIREFTLAPETTGKRSQVGSLDEIIKLSEEFDEVMPTIDFAHIHAR 184
Query: 186 NKGKCNSEEEWREMLTLIEKELGREALDNMHIHISGIEYSDKGEKRHLNLQES-DMRWEE 244
G +R +L IE LG ++H H +GIEY+D GE++H +L E E
Sbjct: 185 GGGCIRDASSYRGILERIESRLGSH---HLHCHFTGIEYTDAGERKHHSLSEGYGPPIEP 241
Query: 245 LLKTLKEFKVKGVVISESPNIEGDAILMK 273
L++ L + +ISE+P + DA +K
Sbjct: 242 LIEVLVDGGWDATIISETPMKDTDARKIK 270
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107950575
Number of Sequences: 2977
Number of extensions: 4552489
Number of successful extensions: 13338
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13316
Number of HSP's gapped (non-prelim): 7
length of query: 281
length of database: 189,106,746
effective HSP length: 57
effective length of query: 224
effective length of database: 154,992,987
effective search space: 34718429088
effective search space used: 34718429088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)