BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1106 (PAB1106) DE:Hypothetical protein
(179 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75019 hypothetical protein PAB1106 - Pyrococcus abyssi (st... 360 6e-99
pir||C71205 hypothetical protein PH1909 - Pyrococcus horikoshii ... 291 3e-78
gi|11498715 conserved hypothetical protein [Archaeoglobus fulgid... 130 1e-29
pir||E69133 conserved hypothetical protein MTH266 - Methanobacte... 123 1e-27
sp|Q57838|Y395_METJA HYPOTHETICAL PROTEIN MJ0395 >gi|2128295|pir... 108 5e-23
emb|CAC12219.1| (AL445066) conserved hypothetical protein [Therm... 82 3e-15
>pir||A75019 hypothetical protein PAB1106 - Pyrococcus abyssi (strain Orsay)
>gi|5459105|emb|CAB50591.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 179
Score = 360 bits (914), Expect = 6e-99
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MKVLFKLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGL 60
MKVLFKLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGL
Sbjct: 1 MKVLFKLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGL 60
Query: 61 NPNLAIYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHI 120
NPNLAIYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHI
Sbjct: 61 NPNLAIYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHI 120
Query: 121 VVDGEEDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVVRNGD 179
VVDGEEDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVVRNGD
Sbjct: 121 VVDGEEDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVVRNGD 179
>pir||C71205 hypothetical protein PH1909 - Pyrococcus horikoshii
>gi|3258351|dbj|BAA31034.1| (AP000007) 179aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 179
Score = 291 bits (738), Expect = 3e-78
Identities = 144/180 (80%), Positives = 163/180 (90%), Gaps = 2/180 (1%)
Query: 1 MKVLFKLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDP-LVTVGDVVTENIMKVG 59
M+V+FKLP LR ELK P+GELIEG+IP PY+K K+I+ +D L+TVGDVVTENIM+VG
Sbjct: 1 MRVVFKLPDELRQELKNPLGELIEGNIPEPYVKAKNIIEGDDGVLITVGDVVTENIMRVG 60
Query: 60 LNPNLAIYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVH 119
LNPNLAIYDHKTERREYKP I + GVL+TVKNPPGTITLPLLK+IKKAYSL+ +GK VH
Sbjct: 61 LNPNLAIYDHKTERREYKPRI-IINGVLLTVKNPPGTITLPLLKSIKKAYSLILNGKSVH 119
Query: 120 IVVDGEEDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVVRNGD 179
IVV+GEEDLATIPAVLYAP+G TVIYGQPK+GIVLIKVTNECKRRCAKIMRRMEVVR+GD
Sbjct: 120 IVVNGEEDLATIPAVLYAPLGATVIYGQPKRGIVLIKVTNECKRRCAKIMRRMEVVRDGD 179
>gi|11498715 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450769|pir||B69389 conserved hypothetical protein
AF1115 - Archaeoglobus fulgidus
>gi|2649473|gb|AAB90127.1| (AE001027) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 186
Score = 130 bits (323), Expect = 1e-29
Identities = 71/174 (40%), Positives = 102/174 (57%), Gaps = 1/174 (0%)
Query: 6 KLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGLNPNLA 65
+LP S+R EL KP G+L G L+V++I + P TVGD+VT + +KVGL P+LA
Sbjct: 5 RLPESMREELAKPHGKLYRGKGEKLLLEVEEI-SEAKPFCTVGDLVTASAIKVGLTPDLA 63
Query: 66 IYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHIVVDGE 125
+ D KT R E + +I NPP I+ L+ A+ KA L GK+V + VDGE
Sbjct: 64 VADGKTLREENVEFEQEAFDEVIETTNPPAHISCELISALLKALKLCEDGKKVLVFVDGE 123
Query: 126 EDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVVRNGD 179
EDLA +P V P+G ++YGQP +G+V +KV E K ++ +ME++ D
Sbjct: 124 EDLAVVPLVKLLPLGALILYGQPGEGVVALKVDEEKKVLILNLLNKMEIIGECD 177
>pir||E69133 conserved hypothetical protein MTH266 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621316|gb|AAB84772.1| (AE000812) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 163
Score = 123 bits (306), Expect = 1e-27
Identities = 66/171 (38%), Positives = 106/171 (61%), Gaps = 11/171 (6%)
Query: 4 LFKLPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGLNPN 63
++ LP LR+ELK+P+GEL + D+ L+TVGDV T N ++ GL P+
Sbjct: 1 MYILPEELRAELKRPLGEL--------HRSFSDVDVGNSFLITVGDVTTRNALEHGLKPD 52
Query: 64 LAIYDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYS-LLSHGKRVHIVV 122
++I D++ +RR+ R +L + +NPPGT+T L K+I++A G+R IVV
Sbjct: 53 VSIIDNRIQRRDSDHEFRDTATILRS-RNPPGTVTESLWKSIEEAIEGATERGERFMIVV 111
Query: 123 DGEEDLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRME 173
DGEEDLA +P++L AP T ++YGQP +G+VL++ +E + ++M++ E
Sbjct: 112 DGEEDLAVLPSILLAPPDTVILYGQPDEGVVLVR-ASETSSKAEELMKKFE 161
>sp|Q57838|Y395_METJA HYPOTHETICAL PROTEIN MJ0395 >gi|2128295|pir||C64349 conserved
hypothetical protein MJ0395 - Methanococcus jannaschii
>gi|1591100|gb|AAB98385.1| (U67492) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 158
Score = 108 bits (267), Expect = 5e-23
Identities = 63/169 (37%), Positives = 101/169 (59%), Gaps = 14/169 (8%)
Query: 7 LPPSLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGLNPNLAI 66
LP LR +LKKP G++ Y + DI + +VTVGD+VT+ ++ + P L+I
Sbjct: 4 LPEELREKLKKPFGKV--------YKTLPDI---DGDIVTVGDIVTKTAIENNIIPKLSI 52
Query: 67 YDHKTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHIVVDGEE 126
+D KT RR I V +I VKNPPG I+ +++IK Y + + + ++VDGEE
Sbjct: 53 FDLKT-RRNIPVKINHVFKKVIKVKNPPGCISDEAIESIK--YLSTINDRNIALLVDGEE 109
Query: 127 DLATIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEVV 175
DL + + Y PIGT V+YGQP +GIV++K+ + K+ +I+++ + +
Sbjct: 110 DLLALIVIKYFPIGTYVLYGQPDEGIVVLKINKKLKQEIEEILKQFKKI 158
>emb|CAC12219.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 156
Score = 82.3 bits (200), Expect = 3e-15
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 13/165 (7%)
Query: 10 SLRSELKKPVGELIEGDIPTPYLKVKDILTNEDPLVTVGDVVTENIMKVGLNPNLAIYDH 69
S R ++K G +++ D +V+D L+ + P+ VGDV N+ KV L I D
Sbjct: 4 SARQKIKGRNGRVVDPD------EVRD-LSVDHPVAAVGDVTAYNLRKVNARVLLEIVDL 56
Query: 70 KTERREYKPNIRSVEGVLITVKNPPGTITLPLLKAIKKAYSLLSHGKRVHIVVDGEEDLA 129
+T+R + + + E I ++N PGTI+ L++AI+ A L K+ I V GEEDLA
Sbjct: 57 RTKRSDL---LFAHEEGSIVIRNDPGTISFDLIRAIQSA---LLSDKKTRIEVIGEEDLA 110
Query: 130 TIPAVLYAPIGTTVIYGQPKKGIVLIKVTNECKRRCAKIMRRMEV 174
+P + YA + T + YG P G+ ++ V + K +++ M +
Sbjct: 111 VLPIIYYADLDTVIAYGIPDVGMAILTVDFDLKCHVCEVLSEMAI 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67400560
Number of Sequences: 2977
Number of extensions: 2783405
Number of successful extensions: 6294
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6279
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 189,106,746
effective HSP length: 54
effective length of query: 125
effective length of database: 156,788,448
effective search space: 19598556000
effective search space used: 19598556000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)