BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1108 (PAB1108) DE:Hypothetical protein
         (149 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75019 hypothetical protein PAB1108 - Pyrococcus abyssi (st...   288  2e-77
pir||H71205 hypothetical protein PH1914 - Pyrococcus horikoshii ...   269  9e-72

>pir||D75019 hypothetical protein PAB1108 - Pyrococcus abyssi (strain Orsay)
           >gi|5459108|emb|CAB50594.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 149
           
 Score =  288 bits (730), Expect = 2e-77
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MKLLVLIDGSKWSQKAALHAFSIAKRSNAKVILFSVLDRREARALAFHLSMRSESLEKIR 60
           MKLLVLIDGSKWSQKAALHAFSIAKRSNAKVILFSVLDRREARALAFHLSMRSESLEKIR
Sbjct: 1   MKLLVLIDGSKWSQKAALHAFSIAKRSNAKVILFSVLDRREARALAFHLSMRSESLEKIR 60

Query: 61  EFEETIWKDMKKSVKEVITTLLELGKREGVNCSFKIAEGSAKEEILKEANSGKYDMVIMG 120
           EFEETIWKDMKKSVKEVITTLLELGKREGVNCSFKIAEGSAKEEILKEANSGKYDMVIMG
Sbjct: 61  EFEETIWKDMKKSVKEVITTLLELGKREGVNCSFKIAEGSAKEEILKEANSGKYDMVIMG 120

Query: 121 AYGRSGKTRIGSLLEEVVGQIRIPVMIVR 149
           AYGRSGKTRIGSLLEEVVGQIRIPVMIVR
Sbjct: 121 AYGRSGKTRIGSLLEEVVGQIRIPVMIVR 149


>pir||H71205 hypothetical protein PH1914 - Pyrococcus horikoshii
           >gi|3258356|dbj|BAA31039.1| (AP000007) 149aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 149
           
 Score =  269 bits (681), Expect = 9e-72
 Identities = 136/149 (91%), Positives = 144/149 (96%)

Query: 1   MKLLVLIDGSKWSQKAALHAFSIAKRSNAKVILFSVLDRREARALAFHLSMRSESLEKIR 60
           MKLLVLIDGSKWSQKAALHAFSIAKR NAKVILFSVLDRREA+ALAFHLSMRS+SL KI+
Sbjct: 1   MKLLVLIDGSKWSQKAALHAFSIAKRKNAKVILFSVLDRREAKALAFHLSMRSDSLGKIK 60

Query: 61  EFEETIWKDMKKSVKEVITTLLELGKREGVNCSFKIAEGSAKEEILKEANSGKYDMVIMG 120
           EFEETIW++ KKSVKEVITTLLELG+REG+NCSFKI EGSAKEEI+KEANSGKY MVIMG
Sbjct: 61  EFEETIWRETKKSVKEVITTLLELGRREGINCSFKIVEGSAKEEIIKEANSGKYSMVIMG 120

Query: 121 AYGRSGKTRIGSLLEEVVGQIRIPVMIVR 149
           AYGRSGKTRIGSLLEEVVGQIRIPVMIVR
Sbjct: 121 AYGRSGKTRIGSLLEEVVGQIRIPVMIVR 149


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.134    0.361 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45810242
Number of Sequences: 2977
Number of extensions: 1529914
Number of successful extensions: 5811
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5809
Number of HSP's gapped (non-prelim): 2
length of query: 149
length of database: 189,106,746
effective HSP length: 59
effective length of query: 90
effective length of database: 153,796,013
effective search space: 13841641170
effective search space used: 13841641170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)