BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1110 (PAB1110) DE:Hypothetical protein
         (307 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75020 hypothetical protein PAB1110 - Pyrococcus abyssi (st...   625  e-178
pir||E71206 hypothetical protein PH1919 - Pyrococcus horikoshii ...   532  e-150

>pir||A75020 hypothetical protein PAB1110 - Pyrococcus abyssi (strain Orsay)
           >gi|5459113|emb|CAB50599.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 307
           
 Score =  625 bits (1594), Expect = e-178
 Identities = 307/307 (100%), Positives = 307/307 (100%)

Query: 1   MRDTINFREIEWLLELLNKYPRESLRKISQREGIEYYRLKRIYDRYYGKYIFVSAIYDIA 60
           MRDTINFREIEWLLELLNKYPRESLRKISQREGIEYYRLKRIYDRYYGKYIFVSAIYDIA
Sbjct: 1   MRDTINFREIEWLLELLNKYPRESLRKISQREGIEYYRLKRIYDRYYGKYIFVSAIYDIA 60

Query: 61  KLGLKSYIAFLSVPKGEIFEVGKEMLKNPFISYINPIFGFKNGIQAILHVPVEQEKYVPE 120
           KLGLKSYIAFLSVPKGEIFEVGKEMLKNPFISYINPIFGFKNGIQAILHVPVEQEKYVPE
Sbjct: 61  KLGLKSYIAFLSVPKGEIFEVGKEMLKNPFISYINPIFGFKNGIQAILHVPVEQEKYVPE 120

Query: 121 LLSKYSDDFEYYEVWSRDPSKVKFGKWSYSYEYAILLDTFKVDARTPMKELEKKLSKGRP 180
           LLSKYSDDFEYYEVWSRDPSKVKFGKWSYSYEYAILLDTFKVDARTPMKELEKKLSKGRP
Sbjct: 121 LLSKYSDDFEYYEVWSRDPSKVKFGKWSYSYEYAILLDTFKVDARTPMKELEKKLSKGRP 180

Query: 181 TIKFMIEKLIKDGIIVGFYAFIENAKEAHDRSVVGIAKELDKEEIYRAFKEEEINIGILR 240
           TIKFMIEKLIKDGIIVGFYAFIENAKEAHDRSVVGIAKELDKEEIYRAFKEEEINIGILR
Sbjct: 181 TIKFMIEKLIKDGIIVGFYAFIENAKEAHDRSVVGIAKELDKEEIYRAFKEEEINIGILR 240

Query: 241 PRGYYVEWFFSSREDIGSKILEFSQYVDKIGIAYLDMFRELNNKHMRTRFSRMIKEDGSG 300
           PRGYYVEWFFSSREDIGSKILEFSQYVDKIGIAYLDMFRELNNKHMRTRFSRMIKEDGSG
Sbjct: 241 PRGYYVEWFFSSREDIGSKILEFSQYVDKIGIAYLDMFRELNNKHMRTRFSRMIKEDGSG 300

Query: 301 YKSILEF 307
           YKSILEF
Sbjct: 301 YKSILEF 307


>pir||E71206 hypothetical protein PH1919 - Pyrococcus horikoshii
           >gi|3258361|dbj|BAA31044.1| (AP000007) 307aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 307
           
 Score =  532 bits (1355), Expect = e-150
 Identities = 248/307 (80%), Positives = 279/307 (90%)

Query: 1   MRDTINFREIEWLLELLNKYPRESLRKISQREGIEYYRLKRIYDRYYGKYIFVSAIYDIA 60
           M + INF E+EWL ELLNKYPRESLRKI+Q EGIEYY+LKRIYD+YYGKYIFV+A+Y I 
Sbjct: 1   MANIINFEELEWLAELLNKYPRESLRKIAQAEGIEYYKLKRIYDKYYGKYIFVNAVYSIT 60

Query: 61  KLGLKSYIAFLSVPKGEIFEVGKEMLKNPFISYINPIFGFKNGIQAILHVPVEQEKYVPE 120
           KLGLKSY+AF+SVPK EIFE GKEML NPF  YINPIFGFKNGIQAILH+PV+QEKY+PE
Sbjct: 61  KLGLKSYVAFISVPKREIFEKGKEMLNNPFFGYINPIFGFKNGIQAILHIPVDQEKYIPE 120

Query: 121 LLSKYSDDFEYYEVWSRDPSKVKFGKWSYSYEYAILLDTFKVDARTPMKELEKKLSKGRP 180
           LLSKYSDDFEYYEVWS DPSKVKFGKW YSYEYAILLD FK+DARTP+KELE KLS+ RP
Sbjct: 121 LLSKYSDDFEYYEVWSNDPSKVKFGKWEYSYEYAILLDIFKIDARTPIKELEAKLSRKRP 180

Query: 181 TIKFMIEKLIKDGIIVGFYAFIENAKEAHDRSVVGIAKELDKEEIYRAFKEEEINIGILR 240
           TI+FMIE+LIKDG+IVGFYAFI+N ++AHDRSVVGIAKELD EEI   FKE EI +GILR
Sbjct: 181 TIRFMIERLIKDGVIVGFYAFIDNVEKAHDRSVVGIAKELDIEEIMSKFKEREIKLGILR 240

Query: 241 PRGYYVEWFFSSREDIGSKILEFSQYVDKIGIAYLDMFRELNNKHMRTRFSRMIKEDGSG 300
           P GYY+EWFFSS EDIG KILEF QYVDKIGIAYLD+FR+LN++H++TRFSRM+K+DGSG
Sbjct: 241 PEGYYIEWFFSSEEDIGRKILEFGQYVDKIGIAYLDLFRDLNHEHIKTRFSRMVKKDGSG 300

Query: 301 YKSILEF 307
           YKSILEF
Sbjct: 301 YKSILEF 307


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117851738
Number of Sequences: 2977
Number of extensions: 5303546
Number of successful extensions: 13205
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13203
Number of HSP's gapped (non-prelim): 2
length of query: 307
length of database: 189,106,746
effective HSP length: 54
effective length of query: 253
effective length of database: 156,788,448
effective search space: 39667477344
effective search space used: 39667477344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)