BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1112 (PAB1112) DE:Hypothetical protein
(119 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75020 hypothetical protein PAB1112 - Pyrococcus abyssi (st... 239 9e-63
pir||A71207 hypothetical protein PHS059 - Pyrococcus horikoshii ... 168 2e-41
pir||B64477 hypothetical protein MJ1419 - Methanococcus jannasch... 93 9e-19
pir||D69054 conserved hypothetical protein MTH1407 - Methanobact... 90 6e-18
gb|AAK41079.1| Conserved hypothetical protein [Sulfolobus solfat... 90 8e-18
pir||F72461 hypothetical protein APES069 - Aeropyrum pernix (str... 83 1e-15
gi|11500034 hypothetical conserved protein [Archaeoglobus fulgidus] 71 6e-12
>pir||D75020 hypothetical protein PAB1112 - Pyrococcus abyssi (strain Orsay)
>gi|5459116|emb|CAB50602.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 119
Score = 239 bits (603), Expect = 9e-63
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MFKECEMEKFLACCRVFKSGGLVTSCNDWEVILMSDVEERINQIIQVLREQVVQDTAVPR 60
MFKECEMEKFLACCRVFKSGGLVTSCNDWEVILMSDVEERINQIIQVLREQVVQDTAVPR
Sbjct: 1 MFKECEMEKFLACCRVFKSGGLVTSCNDWEVILMSDVEERINQIIQVLREQVVQDTAVPR 60
Query: 61 NIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDPNMPLHTRTIIWEVLGALEQIK 119
NIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDPNMPLHTRTIIWEVLGALEQIK
Sbjct: 61 NIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDPNMPLHTRTIIWEVLGALEQIK 119
>pir||A71207 hypothetical protein PHS059 - Pyrococcus horikoshii
>gi|3258365|dbj|BAA31048.1| (AP000007) 93aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 93
Score = 168 bits (422), Expect = 2e-41
Identities = 87/90 (96%), Positives = 89/90 (98%)
Query: 30 EVILMSDVEERINQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIA 89
EVILM++VEERI QIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIA
Sbjct: 4 EVILMTNVEERIEQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIA 63
Query: 90 ILEEISEDPNMPLHTRTIIWEVLGALEQIK 119
ILEEISEDPNMPLHTRTIIWEVLGALEQIK
Sbjct: 64 ILEEISEDPNMPLHTRTIIWEVLGALEQIK 93
>pir||B64477 hypothetical protein MJ1419 - Methanococcus jannaschii
>gi|1592068|gb|AAB99429.1| (U67582) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 101
Score = 93.2 bits (228), Expect = 9e-19
Identities = 43/81 (53%), Positives = 62/81 (76%)
Query: 39 ERINQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDP 98
E I + + ++ ++++ DT VPRNIR AAE+A EA++ + +EP VR+A AI IL+EIS DP
Sbjct: 21 EEILKGVALMLDEIINDTTVPRNIRAAAEKAKEAVLKEGEEPIVRSATAIHILDEISNDP 80
Query: 99 NMPLHTRTIIWEVLGALEQIK 119
NMPLHTRT IW ++ LE++K
Sbjct: 81 NMPLHTRTQIWSIVSELERVK 101
>pir||D69054 conserved hypothetical protein MTH1407 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622519|gb|AAB85884.1| (AE000903) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 102
Score = 90.5 bits (221), Expect = 6e-18
Identities = 40/81 (49%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 39 ERINQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDP 98
E N++ ++LR +++D +VPRNIRRAAE++ E L N +++ VRA+ I+IL+EIS DP
Sbjct: 22 ETFNRVSEILRH-IMEDNSVPRNIRRAAEESNEILNNPDEDSTVRASTVISILDEISNDP 80
Query: 99 NMPLHTRTIIWEVLGALEQIK 119
N+P+H RT++WE+L LE I+
Sbjct: 81 NIPIHARTLVWEILSELESIR 101
>gb|AAK41079.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 89
Score = 90.1 bits (220), Expect = 8e-18
Identities = 46/84 (54%), Positives = 59/84 (69%), Gaps = 1/84 (1%)
Query: 36 DVEERINQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIAILEEIS 95
D E +I Q + +L +++V DT+VPRNIRRAA AI L + PAVRAA+AI ILE+IS
Sbjct: 6 DNEAKIKQAV-ILLQKIVNDTSVPRNIRRAATDAIRNLQDLGLSPAVRAANAIGILEDIS 64
Query: 96 EDPNMPLHTRTIIWEVLGALEQIK 119
+DPNMP H R IW V+ LE +K
Sbjct: 65 QDPNMPTHARISIWNVVSILETVK 88
>pir||F72461 hypothetical protein APES069 - Aeropyrum pernix (strain K1)
>gi|5106039|dbj|BAA81350.1| (AP000064) 91aa long
hypothetical protein [Aeropyrum pernix]
Length = 91
Score = 83.1 bits (202), Expect = 1e-15
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 33 LMSDVEERINQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIAILE 92
L +D E +I + +L ++ DT VPRNIRRAA A+ L + PAVRAA+AI+ LE
Sbjct: 5 LPADNEGKIKLAMSIL-VTIINDTGVPRNIRRAAANALTHLRDPRLSPAVRAANAISALE 63
Query: 93 EISEDPNMPLHTRTIIWEVLGALEQIK 119
E+S+DPNMP + RT IW+V+ LE ++
Sbjct: 64 EVSQDPNMPFYARTRIWQVITILETVR 90
>gi|11500034 hypothetical conserved protein [Archaeoglobus fulgidus]
Length = 84
Score = 70.6 bits (170), Expect = 6e-12
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 41 INQIIQVLREQVVQDTAVPRNIRRAAEQAIEALMNKEKEPAVRAADAIAILEEISEDPNM 100
+ ++++ L ++++ D VPRN+RR A + E L + E ++ AA AI++LE+IS DPN+
Sbjct: 6 LEEVLETL-DRIIHDETVPRNVRRVASEIKEKLTTTD-EVSLEAASAISVLEDISADPNL 63
Query: 101 PLHTRTIIWEVLGALEQI 118
P+H RT+IW + LE+I
Sbjct: 64 PMHVRTMIWNLTSQLERI 81
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.134 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38429843
Number of Sequences: 2977
Number of extensions: 1190870
Number of successful extensions: 4550
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4543
Number of HSP's gapped (non-prelim): 7
length of query: 119
length of database: 189,106,746
effective HSP length: 54
effective length of query: 65
effective length of database: 156,788,448
effective search space: 10191249120
effective search space used: 10191249120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)