BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1113 (PAB1113) DE:Hypothetical protein
         (119 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75020 hypothetical protein PAB1113 - Pyrococcus abyssi (st...   250  5e-66
pir||B71207 hypothetical protein PH1922 - Pyrococcus horikoshii ...   222  9e-58
gi|11498670 conserved hypothetical protein [Archaeoglobus fulgid...   138  2e-32

>pir||E75020 hypothetical protein PAB1113 - Pyrococcus abyssi (strain Orsay)
           >gi|5459117|emb|CAB50603.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 119
           
 Score =  250 bits (631), Expect = 5e-66
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MKGLIIRQPYANWVVEGKKIWEIRKTPTKIRGRIVIISEKKAIGSVELVDVLGPFTPEEL 60
           MKGLIIRQPYANWVVEGKKIWEIRKTPTKIRGRIVIISEKKAIGSVELVDVLGPFTPEEL
Sbjct: 1   MKGLIIRQPYANWVVEGKKIWEIRKTPTKIRGRIVIISEKKAIGSVELVDVLGPFTPEEL 60

Query: 61  ANYEDKHLASYDFLKRYSNGKKLYAWVFKNPEKFEPPIKVDIPNGAQIWVNLKGFKLRR 119
           ANYEDKHLASYDFLKRYSNGKKLYAWVFKNPEKFEPPIKVDIPNGAQIWVNLKGFKLRR
Sbjct: 61  ANYEDKHLASYDFLKRYSNGKKLYAWVFKNPEKFEPPIKVDIPNGAQIWVNLKGFKLRR 119


>pir||B71207 hypothetical protein PH1922 - Pyrococcus horikoshii
           >gi|3258366|dbj|BAA31049.1| (AP000007) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score =  222 bits (561), Expect = 9e-58
 Identities = 100/118 (84%), Positives = 113/118 (95%)

Query: 1   MKGLIIRQPYANWVVEGKKIWEIRKTPTKIRGRIVIISEKKAIGSVELVDVLGPFTPEEL 60
           MKGLII+QPYANW+VEGKK+WEIRKTPTKIRGR++IISEKKA+GSVE+VDVLGPFTPEEL
Sbjct: 1   MKGLIIKQPYANWIVEGKKVWEIRKTPTKIRGRVIIISEKKAVGSVEIVDVLGPFTPEEL 60

Query: 61  ANYEDKHLASYDFLKRYSNGKKLYAWVFKNPEKFEPPIKVDIPNGAQIWVNLKGFKLR 118
           AN+E+KHLASYDFLKRY+NGKKLYAWV  NPEK++PPI+V IPNGAQIWVNLKGF  R
Sbjct: 61  ANHENKHLASYDFLKRYANGKKLYAWVLANPEKYDPPIEVKIPNGAQIWVNLKGFVRR 118


>gi|11498670 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483084|pir||A69383 conserved hypothetical protein
           AF1065 - Archaeoglobus fulgidus
           >gi|2649530|gb|AAB90180.1| (AE001029) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 108
           
 Score =  138 bits (344), Expect = 2e-32
 Identities = 60/107 (56%), Positives = 81/107 (75%)

Query: 6   IRQPYANWVVEGKKIWEIRKTPTKIRGRIVIISEKKAIGSVELVDVLGPFTPEELANYED 65
           +R+P+A+ +V G+K WEIRKT T IRG ++I+S+  A+G  +L DVLGPFT EEL  ++D
Sbjct: 1   MREPFASMIVRGEKKWEIRKTNTNIRGEVIILSQGYALGKAKLADVLGPFTVEELLEFKD 60

Query: 66  KHLASYDFLKRYSNGKKLYAWVFKNPEKFEPPIKVDIPNGAQIWVNL 112
            H A  DFL+ YS GKKLYAWVF+ PE+FE  ++V IP GAQ+WV +
Sbjct: 61  YHRADEDFLRSYSGGKKLYAWVFEEPEEFEKKVRVKIPRGAQVWVKI 107


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.434 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51858440
Number of Sequences: 2977
Number of extensions: 2071744
Number of successful extensions: 4213
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4210
Number of HSP's gapped (non-prelim): 3
length of query: 119
length of database: 189,106,746
effective HSP length: 48
effective length of query: 71
effective length of database: 160,379,370
effective search space: 11386935270
effective search space used: 11386935270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)