BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1116 (PAB1116) DE:Hypothetical protein
(353 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (st... 691 0.0
pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii ... 367 e-100
pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (st... 162 5e-39
pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii ... 158 8e-38
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 80 4e-14
pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (st... 78 1e-13
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ... 75 1e-12
>pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (strain Orsay)
>gi|5459120|emb|CAB50606.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 353
Score = 691 bits (1763), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MITDLVPYLNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDIEEFILAPLNVEVK 60
MITDLVPYLNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDIEEFILAPLNVEVK
Sbjct: 1 MITDLVPYLNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDIEEFILAPLNVEVK 60
Query: 61 ENNILNVIPNFYYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINTLV 120
ENNILNVIPNFYYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINTLV
Sbjct: 61 ENNILNVIPNFYYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINTLV 120
Query: 121 VSIIAYLGYGLSMVYLGFVLISHSRGTIETLFPIGTIGVGLLNLTYPITSNIPILSTSFF 180
VSIIAYLGYGLSMVYLGFVLISHSRGTIETLFPIGTIGVGLLNLTYPITSNIPILSTSFF
Sbjct: 121 VSIIAYLGYGLSMVYLGFVLISHSRGTIETLFPIGTIGVGLLNLTYPITSNIPILSTSFF 180
Query: 181 TLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQSNPVIIT 240
TLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQSNPVIIT
Sbjct: 181 TLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQSNPVIIT 240
Query: 241 RRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMGYKTLYIDCLE 300
RRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMGYKTLYIDCLE
Sbjct: 241 RRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMGYKTLYIDCLE 300
Query: 301 YLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEFKKI 353
YLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEFKKI
Sbjct: 301 YLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEFKKI 353
>pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii
>gi|3258371|dbj|BAA31054.1| (AP000007) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 367 bits (931), Expect = e-100
Identities = 190/357 (53%), Positives = 251/357 (70%), Gaps = 6/357 (1%)
Query: 1 MITDLVPYLNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDIEEFILAPLNVEVK 60
MI LVPY+NL SR+ L +SSY+AVKTR+SGWI+LSFAFLL LD+EE+IL PL ++++
Sbjct: 1 MIYSLVPYINLFSRITLLGASSYRAVKTRESGWILLSFAFLLSTLDVEEYILKPLGIQIQ 60
Query: 61 ENNIL-NVIPNFYYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINT- 118
N+ L +P+FY ILF M L+R +I+ + +IIGST +I I F A N
Sbjct: 61 GNHYLFTFLPSFYIGILFLMTTFLLREHQISPRGVIIIGSTFIIFHIWTFAMAVNLFNND 120
Query: 119 -LVVSIIAYLGYGLSMVYLGFVLISH-SRGTIETLFPIGTIGVGLLNLTYPITSNIPILS 176
++ ++ L G S+++L L+ + +R +IE LFPIG VGLLNLTYP+T NI +S
Sbjct: 121 FTLIGLLPSLILGGSLIFLSVSLLEYVNRKSIEILFPIGVGSVGLLNLTYPVTRNIHTIS 180
Query: 177 TSFFTLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQSNP 236
F +AAIFR +AAIGAIKM+ +P+ P+ K +PGAYWTE+++ L LIS NP
Sbjct: 181 DMLFLVAAIFRLIAAIGAIKMVTFVPKAPKNIKVIS--KPGAYWTENEEKGLNLISTMNP 238
Query: 237 VIITRRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMGYKTLYI 296
VIITR+ L+I PA +YWITK KEG+I EN+YAI PT I IL DLI RAF++GY +YI
Sbjct: 239 VIITRKRDLNIKTPAIVYWITKVKEGEIGENIYAILPTNIGILTDLIYRAFKVGYNAVYI 298
Query: 297 DCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEFKKI 353
DC+EYL LENGT ATLKFLY KDI+ + G I+L +NPK E+E+K+IEKEF+KI
Sbjct: 299 DCIEYLILENGTKATLKFLYNAKDIVLSNKGTIVLVINPKALGEQELKIIEKEFQKI 355
>pir||H75180 hypothetical protein PAB0416 - Pyrococcus abyssi (strain Orsay)
>gi|5458037|emb|CAB49527.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 366
Score = 162 bits (406), Expect = 5e-39
Identities = 108/363 (29%), Positives = 194/363 (52%), Gaps = 30/363 (8%)
Query: 9 LNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILDI--EEFILAPLNVEVKENNILN 66
+N+++R +++I S Y+ ++ R+ II++ AF L + + + L V +NI
Sbjct: 5 INVVTRGLMWILSFYRWIRKREPLMIIITLAFWSDFLGVLTQPIVSKMLGVSPDVSNISP 64
Query: 67 VIPNF--------YYAILFTMAGTLIRYRRITAKTSMIIGSTLLIAQILMFGNATKAINT 118
++ + + A ++T+ + ++T+ +GS ++ + +
Sbjct: 65 LMSTYALLEGIFLFLATMYTLGTIKKAWAQVTSFVVFQVGSLYIVLSTIFKADLP----- 119
Query: 119 LVVSIIAYLGYGLSMVYLGFVLISH---SRGTIETLFPIGTIGVGLLNLTYPITSNIPIL 175
V+S + L G+SM+ LG L+ SRG I LFPIG I +G +NLTYP+ L
Sbjct: 120 -VISAFSVLFMGISMILLGISLLKREIESRG-IAALFPIGLILLGSINLTYPLLVYSK-L 176
Query: 176 STSFFTLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELISQ-- 233
+ + A+FR + IG K I + P+ + L+PGA++T+++ +I +
Sbjct: 177 APYLYGAGAVFRVLMIIGLFKYTIFEVKPPKIQEII--LKPGAFYTDNESEFESVIMKMQ 234
Query: 234 --SNPVIITRRNP-LDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMG 290
N V+ITR+ P + FP ++WITK G+I ENV AI P+ I ILIDL+ R E G
Sbjct: 235 LSGNGVLITRKLPKMSPTFP--VFWITKVTSGRIDENVTAIQPSDIGILIDLVKRHLEKG 292
Query: 291 YKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEF 350
+ + +D EYL +ENG +KFL+++KD + K N ++L NP+ +++++ +I +E
Sbjct: 293 HSVVAMDAFEYLVVENGFEVAVKFLFSLKDHVLKLNKTLILFTNPQAYQDKQWSVIAREL 352
Query: 351 KKI 353
+++
Sbjct: 353 ERL 355
>pir||C71033 hypothetical protein PH1555 - Pyrococcus horikoshii
>gi|3257984|dbj|BAA30667.1| (AP000006) 366aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 366
Score = 158 bits (396), Expect = 8e-38
Identities = 105/357 (29%), Positives = 182/357 (50%), Gaps = 16/357 (4%)
Query: 9 LNLLSRLILFISSSYKAVKTRDSGWIILSFAFLLPILD--IEEFILAPLNVEVKENNILN 66
+NL R I++ S YK ++ ++ ++LS F +L ++ +L VE +
Sbjct: 8 INLGMRGIIWGFSFYKWLRRKEDFMLLLSITFWFDLLGGLSQKQLLIHFGVEPNPTALTP 67
Query: 67 VIPNFYYA--ILFTMAGTLI--RYRRITAKTSMIIGSTLLIAQILMFGNATKAINTLVVS 122
++ F IL +A + R R + II S + IL+ L+
Sbjct: 68 LMSTFALTEGILLLVASMDVTGRARDLKIIILFIIASHFGLTYILICTLINAPTRILITY 127
Query: 123 IIAYLGYGLSMVYLGFVLISH--SRGTIETLFPIGTIGVGLLNLTYPITSNIPILSTSFF 180
+ +LG+ S++ G+VL+ H S + LFP+G I +GL+++TYP+T N+ I +F
Sbjct: 128 PVLFLGF--SLILAGYVLLRHEISIKNVSALFPLGMILLGLIDITYPVTVNMSIAPYLYF 185
Query: 181 TLAAIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWTESKKGALELI----SQSNP 236
+FR M +G K + PR + PG Y+ E ++ +++ S N
Sbjct: 186 A-GGVFRGMILVGIFKYALFEVSSPRVIGEGINILPGGYYLEDREVFHDILKRMESLGNG 244
Query: 237 VIITRRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLINRAFEMGYKTLYI 296
V+ITR P D +F I+W+TK G I++N+ AISPT + IL+DL+ R E G+ + I
Sbjct: 245 VLITRHLPKD-SFSFPIFWLTKVVSGPIKDNIIAISPTDLGILLDLVRRHLERGHTVVVI 303
Query: 297 DCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEFKKI 353
D EY+ +ENG +KFL ++KD K+ ++L + + + + + K+I +EF+ +
Sbjct: 304 DGFEYIVIENGFETAMKFLLSLKDTAIKYRARLILVTSSQAYSQNQWKIIAREFENL 360
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 80.0 bits (194), Expect = 4e-14
Identities = 47/137 (34%), Positives = 74/137 (53%), Gaps = 8/137 (5%)
Query: 218 AYWTESKKGALELISQSNPVIITRRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKID 277
A+ S + L L+ N + ITR +N + I W+T + E + PT +
Sbjct: 109 AFLATSFEEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTSSGEN-------GVPPTSLH 161
Query: 278 ILIDL-INRAFEMGYKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPK 336
+L+DL I A E + +DCLE+L L NG N+ KFL +KD IT G++++ + PK
Sbjct: 162 VLLDLSIRFANENRGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPK 221
Query: 337 TFEEREVKMIEKEFKKI 353
ERE+ M+++EF+ I
Sbjct: 222 ALGEREMNMLKREFRPI 238
>pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (strain Orsay)
>gi|5457516|emb|CAB49007.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 78.0 bits (189), Expect = 1e-13
Identities = 66/243 (27%), Positives = 110/243 (45%), Gaps = 33/243 (13%)
Query: 132 SMVYLGFVLISHSRGTIETLFPIGTIGVGLLNLT--------YPITSNIPILSTSFFTLA 183
+M Y F + S S TL I I LLN + + + ++ ++ + L
Sbjct: 36 AMKYWPFAMASISALVSFTLISIAQIIGALLNTSVLYDKYEPWQLIRSVLLIIAAILLLV 95
Query: 184 AIFRFMAAIGAIKMIILIPEEPRKSKRTKGLQPGAYWT---ESKKGALELISQSNPVIIT 240
++ F G K +I K + G AYW + L++ P I
Sbjct: 96 SVLSFYIPFGRGKYVIFRIRTEEKFRELWG----AYWCYRDQCYAAFKALLNARFPGIAI 151
Query: 241 RRNP-------LDINFPAAIYWITKAKEGKIRENVYAISPTKIDILIDLIN---RAFEMG 290
R+P L+++ I WI+K K + A+SPT+++ L I R+ E+
Sbjct: 152 TRDPPEVFRGKLNLHLTPVI-WISKVKHEE------AVSPTRLEFLTQRIADFLRSAEID 204
Query: 291 YKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPKTFEEREVKMIEKEF 350
K + IDCL+YL LENG NA +KF+ +KD+ H G+IL+ ++ E+ V +++E
Sbjct: 205 -KVILIDCLDYLILENGENAVIKFVTRLKDLAMLHRGIILVTIDESVLSEKVVSFLKREL 263
Query: 351 KKI 353
+ I
Sbjct: 264 EPI 266
>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
>gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 74.9 bits (181), Expect = 1e-12
Identities = 47/150 (31%), Positives = 75/150 (49%), Gaps = 14/150 (9%)
Query: 202 PEEPRKSKRTKGLQPGAYWTESKKGALELISQSNPVIITRRNPLDINFPAAIYWITKAKE 261
PEEP KG GAY S + L LI ++ITR N + + W+T + E
Sbjct: 99 PEEPI----FKG--EGAYLARSYEEVLSLIKNKRVLVITRNPTKYRNLASRVIWVTSSGE 152
Query: 262 GKIRENVYAISPTKIDILIDLINRAF-EMGYKTLYIDCLEYLALENGTNATLKFLYTIKD 320
+ PT + +++DL R E + IDC+E+L L NG + KFL +KD
Sbjct: 153 K-------GVHPTSLHVILDLCIRFIKENRGGIVLIDCVEFLTLYNGFPSVFKFLTGLKD 205
Query: 321 IITKHNGVILLALNPKTFEEREVKMIEKEF 350
+ G I++ +NP ++R++ ++E+EF
Sbjct: 206 NVLMRGGKIIIMVNPNAIDKRDLSLLEREF 235
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.142 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118544170
Number of Sequences: 2977
Number of extensions: 4752873
Number of successful extensions: 17204
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17190
Number of HSP's gapped (non-prelim): 7
length of query: 353
length of database: 189,106,746
effective HSP length: 56
effective length of query: 297
effective length of database: 155,591,474
effective search space: 46210667778
effective search space used: 46210667778
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)