BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1117 (PAB1117) DE:Hypothetical protein
(146 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75021 hypothetical protein PAB1117 - Pyrococcus abyssi (st... 286 6e-77
pir||A71208 hypothetical protein PH1929 - Pyrococcus horikoshii ... 232 1e-60
pir||H71124 hypothetical protein PH0767 - Pyrococcus horikoshii ... 125 2e-28
pir||B71028 hypothetical protein PH1518 - Pyrococcus horikoshii ... 102 2e-21
pir||G71189 hypothetical protein PH1791 - Pyrococcus horikoshii ... 99 3e-20
>pir||B75021 hypothetical protein PAB1117 - Pyrococcus abyssi (strain Orsay)
>gi|5459122|emb|CAB50608.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 146
Score = 286 bits (725), Expect = 6e-77
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MRYSMKSLSSRSAMLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGL 60
MRYSMKSLSSRSAMLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGL
Sbjct: 1 MRYSMKSLSSRSAMLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGL 60
Query: 61 KLQSKPFSMLVTPKQFGPTTLIPHFLALLTSSSSRSALPASLNPADITTTPLTPFSPHSS 120
KLQSKPFSMLVTPKQFGPTTLIPHFLALLTSSSSRSALPASLNPADITTTPLTPFSPHSS
Sbjct: 61 KLQSKPFSMLVTPKQFGPTTLIPHFLALLTSSSSRSALPASLNPADITTTPLTPFSPHSS 120
Query: 121 ITSGTNLAGTAITATSTSSGISLTLL 146
ITSGTNLAGTAITATSTSSGISLTLL
Sbjct: 121 ITSGTNLAGTAITATSTSSGISLTLL 146
>pir||A71208 hypothetical protein PH1929 - Pyrococcus horikoshii
>gi|3258373|dbj|BAA31056.1| (AP000007) 174aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 174
Score = 232 bits (586), Expect = 1e-60
Identities = 115/133 (86%), Positives = 119/133 (89%)
Query: 14 MLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGLKLQSKPFSMLVTP 73
M P+LMNLLIPTSCLAAQS IAAP APLWLMNAIGPN GLACLSGGLKLQS PFS VTP
Sbjct: 1 MFPKLMNLLIPTSCLAAQSRIAAPKAPLWLMNAIGPNFGLACLSGGLKLQSNPFSKFVTP 60
Query: 74 KQFGPTTLIPHFLALLTSSSSRSALPASLNPADITTTPLTPFSPHSSITSGTNLAGTAIT 133
+QFGPTTLIPHF AL T+SSS+SALPASLNPADITTTPLTPFSPHSSITSGTN AGTAIT
Sbjct: 61 RQFGPTTLIPHFFALFTNSSSKSALPASLNPADITTTPLTPFSPHSSITSGTNFAGTAIT 120
Query: 134 ATSTSSGISLTLL 146
ATST SG S LL
Sbjct: 121 ATSTLSGTSFILL 133
>pir||H71124 hypothetical protein PH0767 - Pyrococcus horikoshii
>gi|3257175|dbj|BAA29858.1| (AP000003) 272aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 272
Score = 125 bits (311), Expect = 2e-28
Identities = 77/147 (52%), Positives = 87/147 (58%), Gaps = 7/147 (4%)
Query: 2 RYSMKSLSSRSAMLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGLK 61
+YS+ S S SAMLP LMN P S +I APNAPLWLMNA P L +K
Sbjct: 126 KYSISSAKSTSAMLPTLMNFENPMSSFIVLYTIPAPNAPLWLMNATFPFLATV-----IK 180
Query: 62 LQSKPFSMLVTPKQFGPTTLIPHFLALLTSSSSR--SALPASLNPADITTTPLTPFSPHS 119
+ K + + P QFGP LIP+ A+ TSS S + P S NPA I TTPLTPFSPH
Sbjct: 181 VAFKSTWVFIIPTQFGPMILIPYLWAISTSSFSSLFPSSPVSPNPAVIITTPLTPFSPHW 240
Query: 120 SITSGTNLAGTAITATSTSSGISLTLL 146
S TNL GT I A S SSGISLTLL
Sbjct: 241 ISVSFTNLFGTTIIAKSISSGISLTLL 267
>pir||B71028 hypothetical protein PH1518 - Pyrococcus horikoshii
>gi|3257943|dbj|BAA30626.1| (AP000006) 149aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 149
Score = 102 bits (252), Expect = 2e-21
Identities = 65/148 (43%), Positives = 80/148 (53%), Gaps = 6/148 (4%)
Query: 1 MRYSMKSLSSRSAMLPRLMNLLIPTSCLAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGL 60
++ S +S SS SA+ P L P A P APLWL+NA GP S G
Sbjct: 6 LKNSRRSASSISALFPTLTTAESPIFSSIVHPIRAIPRAPLWLINANGPGR----TSVGP 61
Query: 61 KLQSKPFSMLVTPKQFGPTTLIPHFLALLTSSSSR--SALPASLNPADITTTPLTPFSPH 118
K+ + TP GP+ LIP+FLA+ T+ S + P+S NP +I TPF PH
Sbjct: 62 KVAFNFAGVYTTPNMLGPSILIPYFLAVSTNCCSTFFPSSPSSPNPDEIIGATFTPFFPH 121
Query: 119 SSITSGTNLAGTAITATSTSSGISLTLL 146
SS TSGT+ AGT ITA STSSG S LL
Sbjct: 122 SSTTSGTDFAGTTITAISTSSGTSKMLL 149
>pir||G71189 hypothetical protein PH1791 - Pyrococcus horikoshii
>gi|3258227|dbj|BAA30910.1| (AP000007) 123aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 123
Score = 98.7 bits (242), Expect = 3e-20
Identities = 66/121 (54%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 28 LAAQSSIAAPNAPLWLMNAIGPNLGLACLSGGLKLQSKPFSMLVTPKQFGPTTLIPHFLA 87
+AAQSSIAA APLWLM AIGP GL+ S G S P S TP Q GP TLIP LA
Sbjct: 4 IAAQSSIAAAKAPLWLMKAIGPLGGLSIFSSGRNTVSTPVSGTYTPTQLGPITLIP--LA 61
Query: 88 LLTSSSSRSAL----PASLNPADITTTPLTPFSPHSSITSGTNLAGTAITATSTSSGISL 143
L S S S L P+S NP I T PFSP + SGT AG AITA S SSG S
Sbjct: 62 LAISRISCSILLPSSPSSPNPPVIIITDFIPFSPIFLMVSGTAGAGIAITARSVSSGSSE 121
Query: 144 T 144
T
Sbjct: 122 T 122
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.127 0.359
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50194664
Number of Sequences: 2977
Number of extensions: 1947338
Number of successful extensions: 9772
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9763
Number of HSP's gapped (non-prelim): 5
length of query: 146
length of database: 189,106,746
effective HSP length: 59
effective length of query: 87
effective length of database: 153,796,013
effective search space: 13380253131
effective search space used: 13380253131
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)