BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1118 (PAB1118) DE:Hypothetical protein
(204 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75021 hypothetical protein PAB1118 - Pyrococcus abyssi (st... 407 e-113
pir||F71208 hypothetical protein PH1934 - Pyrococcus horikoshii ... 280 8e-75
gi|11498599 conserved hypothetical protein [Archaeoglobus fulgid... 190 7e-48
emb|CAA70601.1| (Y09452) Yed j hypothetical protein [Pseudomonas... 110 1e-23
sp|P54168|YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN BSAA-ILVD I... 108 4e-23
sp|P46144|YEDJ_ECOLI HYPOTHETICAL 25.9 KD PROTEIN IN DCM-SERU IN... 104 1e-21
dbj|BAB06554.1| (AP001516) unknown conserved protein [Bacillus h... 95 7e-19
gb|AAG19058.1| (AE005005) Vng0534c [Halobacterium sp. NRC-1] 78 1e-13
gb|AAF97306.1|AC007843_9 (AC007843) Hypothetical protein [Arabid... 72 6e-12
>pir||G75021 hypothetical protein PAB1118 - Pyrococcus abyssi (strain Orsay)
>gi|5459127|emb|CAB50613.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 204
Score = 407 bits (1034), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MSCETILRKYFKDIPGIILEACRLSKEKLGEGSHGFSHTLRVLALSLCIGAREGGNLEVI 60
MSCETILRKYFKDIPGIILEACRLSKEKLGEGSHGFSHTLRVLALSLCIGAREGGNLEVI
Sbjct: 1 MSCETILRKYFKDIPGIILEACRLSKEKLGEGSHGFSHTLRVLALSLCIGAREGGNLEVI 60
Query: 61 ALSAILHDIARPLEDMGTIKDHAKVGAEIARKFLETFKYGKIDEVCHAIEAHRFSGKTRP 120
ALSAILHDIARPLEDMGTIKDHAKVGAEIARKFLETFKYGKIDEVCHAIEAHRFSGKTRP
Sbjct: 61 ALSAILHDIARPLEDMGTIKDHAKVGAEIARKFLETFKYGKIDEVCHAIEAHRFSGKTRP 120
Query: 121 RTLEAKILSDADKLDALGAIGIARVFMYSGEKGRSIQDSIKHFEEKILRLKDMMYTKTAK 180
RTLEAKILSDADKLDALGAIGIARVFMYSGEKGRSIQDSIKHFEEKILRLKDMMYTKTAK
Sbjct: 121 RTLEAKILSDADKLDALGAIGIARVFMYSGEKGRSIQDSIKHFEEKILRLKDMMYTKTAK 180
Query: 181 EIAERRYRIVEEFIKELKREIMEC 204
EIAERRYRIVEEFIKELKREIMEC
Sbjct: 181 EIAERRYRIVEEFIKELKREIMEC 204
>pir||F71208 hypothetical protein PH1934 - Pyrococcus horikoshii
>gi|3258378|dbj|BAA31061.1| (AP000007) 206aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 206
Score = 280 bits (709), Expect = 8e-75
Identities = 135/203 (66%), Positives = 172/203 (84%), Gaps = 2/203 (0%)
Query: 1 MSCETILRKYFKDIPGIILEACRLSKEKLGEGSHGFSHTLRVLALSLCIGAREGGNLEVI 60
+ CE IL++YFKD+P II AC+ ++EKLGEGSHGFSHTLRVLA++L IG++E +LE++
Sbjct: 3 IECEGILKRYFKDVPEIIKRACKFAREKLGEGSHGFSHTLRVLAIALHIGSKENADLEIL 62
Query: 61 ALSAILHDIARPLEDMGTIKDHAKVGAEIARKFLETFKYGKIDEVCHAIEAHRFSGKTRP 120
AL+A+LHDIARPLED G I+DHA GA+IA++FL Y K++EV HAI +HRFS P
Sbjct: 63 ALAALLHDIARPLEDKGVIRDHAIEGAKIAKEFLSN--YEKVEEVAHAIASHRFSNDVEP 120
Query: 121 RTLEAKILSDADKLDALGAIGIARVFMYSGEKGRSIQDSIKHFEEKILRLKDMMYTKTAK 180
RTLEAKILSDADK+DALGAIGIARVF+YS EK RSI+DSIKHFEEKIL+LKD+MYTKT K
Sbjct: 121 RTLEAKILSDADKIDALGAIGIARVFIYSCEKERSIEDSIKHFEEKILKLKDLMYTKTGK 180
Query: 181 EIAERRYRIVEEFIKELKREIME 203
EIAE+R+++V+ +++ LK E+ E
Sbjct: 181 EIAEKRHKVVKWYVETLKSELRE 203
>gi|11498599 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429772|pir||B69374 conserved hypothetical protein
AF0994 - Archaeoglobus fulgidus
>gi|2649601|gb|AAB90247.1| (AE001035) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 185
Score = 190 bits (479), Expect = 7e-48
Identities = 94/171 (54%), Positives = 129/171 (74%), Gaps = 6/171 (3%)
Query: 33 SHGFSHTLRVLALSLCIGAREGGNLEVIALSAILHDIARPLEDMGTIKDHAKVGAEIARK 92
SH H RV+ L+ I REG L+V+ +A LHDIAR + HA+ AEIAR+
Sbjct: 3 SHDEGHVERVIKLARYIAEREGARLDVVLKAAELHDIARGYPN------HARKSAEIARE 56
Query: 93 FLETFKYGKIDEVCHAIEAHRFSGKTRPRTLEAKILSDADKLDALGAIGIARVFMYSGEK 152
L+ ++ VCHAIEAH FSGK +P+TLEAKILSDADKLDA+GAIG+AR F+YSGEK
Sbjct: 57 LLKDHDAEFVEAVCHAIEAHSFSGKMKPKTLEAKILSDADKLDAIGAIGVARAFLYSGEK 116
Query: 153 GRSIQDSIKHFEEKILRLKDMMYTKTAKEIAERRYRIVEEFIKELKREIME 203
GRSI++++KHFEEK+L+L+D++YT+TA++IAE R+R +E F +++K+E+ E
Sbjct: 117 GRSIEETLKHFEEKLLKLRDLLYTETARKIAEERHRFLEIFYRQIKKELDE 167
>emb|CAA70601.1| (Y09452) Yed j hypothetical protein [Pseudomonas syringae]
Length = 208
Score = 110 bits (272), Expect = 1e-23
Identities = 68/189 (35%), Positives = 97/189 (50%), Gaps = 18/189 (9%)
Query: 31 EGSHGFSHTLRVLALSLCIGAREGGNLEVIALSAILHDIARPLEDMGTIKDHAKVGAEIA 90
+G+H SH LRV I REGG+ V+ + +LHD +D +++ A A
Sbjct: 15 DGAHDVSHLLRVWKNVCAIRDREGGDARVLIAATLLHDCVSVEKDSPFRSCRSRLAAARA 74
Query: 91 RKFLETFKYGK--IDEVCHAIEAHRFSGKTRPRTLEAKILSDADKLDALGAIGIARVFMY 148
R+ L + + I V HAIEAH FS P TLEA+IL DA++LD+LG IG+AR F
Sbjct: 75 RELLTEMGWDEESIAAVAHAIEAHSFSAAITPLTLEARILQDANRLDSLGMIGVARTFYV 134
Query: 149 SGEKGRSIQD----------------SIKHFEEKILRLKDMMYTKTAKEIAERRYRIVEE 192
SG GR + + + HF K+L L D T T ++A+ R+ ++
Sbjct: 135 SGRMGRQLYEPNDPHASQRPYDDRNFAADHFHTKLLHLADSFQTDTGTQMAKIRHDRLKR 194
Query: 193 FIKELKREI 201
F+ EL EI
Sbjct: 195 FLDELMEEI 203
>sp|P54168|YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN BSAA-ILVD INTERGENIC REGION
>gi|7429774|pir||E69935 conserved hypothetical protein
ypgQ - Bacillus subtilis >gi|1256633|gb|AAA96627.1|
(L77246) putative [Bacillus subtilis]
>gi|2634609|emb|CAB14107.1| (Z99115) similar to
hypothetical proteins [Bacillus subtilis]
Length = 205
Score = 108 bits (268), Expect = 4e-23
Identities = 63/178 (35%), Positives = 100/178 (55%), Gaps = 15/178 (8%)
Query: 34 HGFSHTLRVLALSLCIGAREGGNLEVIALSAILHDIARPLEDMGTIKDHAKVGAEIARKF 93
H + H RV L+ IG +E +L ++ +A++HD+ + D ++
Sbjct: 25 HDWHHVSRVADLAAYIGEKEKADLFIVETAALVHDLIDV-----KLPDTVRLSVSEVYDQ 79
Query: 94 LETFKYGK--IDEVCHAIEAHRFSGKTR----PRTLEAKILSDADKLDALGAIGIARVFM 147
L F GK D V H I F + + P ++E K + DAD+LDA+GA+GIAR FM
Sbjct: 80 LVFFGVGKENADRVIHIITRMSFRDRGKLAKEPLSIEGKAVQDADRLDAIGAVGIARAFM 139
Query: 148 YSGEKGRSI----QDSIKHFEEKILRLKDMMYTKTAKEIAERRYRIVEEFIKELKREI 201
++G KG + Q + HF K+LRLKDMM T TA+E+AE R+ + +F+++L+++I
Sbjct: 140 FAGAKGHGLYGDEQSAYAHFFHKLLRLKDMMNTDTARELAEERHNFMLQFVRQLEKDI 197
>sp|P46144|YEDJ_ECOLI HYPOTHETICAL 25.9 KD PROTEIN IN DCM-SERU INTERGENIC REGION
>gi|7429775|pir||F64960 membrane protein yedJ -
Escherichia coli >gi|1736632|dbj|BAA15790.1| (D90835)
ORF_ID:o344#10; similar to [SwissProt Accession Number
P46144] [Escherichia coli] >gi|1788273|gb|AAC75028.1|
(AE000288) orf, hypothetical protein [Escherichia coli
K12]
Length = 231
Score = 104 bits (256), Expect = 1e-21
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 20/191 (10%)
Query: 31 EGSHGFSHTLRVLALSLCIGAREGGNLEVIALSAILHDIARPLEDMGTIKDHAKVGAEIA 90
+ +H H RV A + + A + ++ VI + HDI ++ + + + AE
Sbjct: 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEET 81
Query: 91 RKFL----ETFKYGKIDEVCHAIEAHRFSGKTRPRTLEAKILSDADKLDALGAIGIARVF 146
R+ L E F KI+ VCHAI AH FS + P T EAKI+ DAD+L+ALGAIG+ARVF
Sbjct: 82 RRLLREEFEQFPAEKIEAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVF 141
Query: 147 MYSGEKGRSIQD----------------SIKHFEEKILRLKDMMYTKTAKEIAERRYRIV 190
SG G ++ D ++ HF+ K+L+L M T K++A+ +
Sbjct: 142 AVSGALGVALFDGEDPFAQHRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFL 201
Query: 191 EEFIKELKREI 201
EF+ +L E+
Sbjct: 202 VEFMAKLSAEL 212
>dbj|BAB06554.1| (AP001516) unknown conserved protein [Bacillus halodurans]
Length = 215
Score = 94.8 bits (232), Expect = 7e-19
Identities = 68/202 (33%), Positives = 102/202 (49%), Gaps = 30/202 (14%)
Query: 24 LSKEKLGEGS-HGFSHTLRVLALSLCIGAREGGNLEVIALSAILHDIA--RPLEDMGTIK 80
+ K+ + E S H + H RV ++ IG +E ++ V+ ++A+ HD+ + ++D T K
Sbjct: 14 VKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAK 73
Query: 81 DHAKVGAEIARKFLETFKYGKIDEVCHAIEAHRFSGKTRPR--TLEAKILSDADKLDALG 138
E A + KID I F G T EA ++ DAD+LDALG
Sbjct: 74 QQLIDWMEAAGVPSQ-----KIDHTMDIINTISFKGGHGQSLATREAMVVQDADRLDALG 128
Query: 139 AIGIARVFMYSGEKGRSIQD--------------------SIKHFEEKILRLKDMMYTKT 178
AIGIAR F YSG KG+ I D +I HF EK+ +LKD+M T+T
Sbjct: 129 AIGIARTFAYSGNKGQPIYDPELPIRETMTVEEYRHGKSTAINHFYEKLFKLKDLMNTET 188
Query: 179 AKEIAERRYRIVEEFIKELKRE 200
K++A+ R+ +E+FI+ E
Sbjct: 189 GKQLAKERHVFMEQFIERFLSE 210
>gb|AAG19058.1| (AE005005) Vng0534c [Halobacterium sp. NRC-1]
Length = 210
Score = 77.6 bits (188), Expect = 1e-13
Identities = 51/161 (31%), Positives = 84/161 (51%), Gaps = 9/161 (5%)
Query: 36 FSHTLRVLALSLCIGAREGGNLEVIALSAILHDIARPLEDMGTIKDHAKVGAEIARKFLE 95
F+H + V+ ++ I N++V+ ++A+ HDIA+ + HA+ GA IARK+LE
Sbjct: 34 FTHIMNVVDIAERIAEATSANVDVVRVAALFHDIAKLEAEQDA---HAEEGARIARKYLE 90
Query: 96 T---FKYGKIDEVCHAIEAHRFSGKTRPRTLEAKILSDADKLDALGAIGIARVFMYSGEK 152
T F +D+V A+ H + G LEA+ L +AD LD GA G A + + G +
Sbjct: 91 THGQFPPSFVDQVAEAVSRHSYQGDLMDLPLEARCLVEADLLDKAGANGAALMLLRMGYE 150
Query: 153 GRSIQDSIKHFEEKILRLKD---MMYTKTAKEIAERRYRIV 190
R+ D+ + + + R +D + + A IA RR + V
Sbjct: 151 ARTHVDAAEMIQRVLDRGEDAAERVESDAASSIAHRRLKRV 191
>gb|AAF97306.1|AC007843_9 (AC007843) Hypothetical protein [Arabidopsis thaliana]
Length = 151
Score = 71.8 bits (173), Expect = 6e-12
Identities = 37/98 (37%), Positives = 55/98 (55%), Gaps = 21/98 (21%)
Query: 124 EAKILSDADKLDALGAIGIARVFMYSGEKGRSIQD---------------------SIKH 162
E ++ DAD+LDA+GAIGIAR F + G + R + D +I H
Sbjct: 49 EFGVVQDADRLDAIGAIGIARCFTFGGSRNRVLHDPEIKPRTELTKEQYIKREEQTTINH 108
Query: 163 FEEKILRLKDMMYTKTAKEIAERRYRIVEEFIKELKRE 200
F EK+L+LK +M T+ K AE+R++ +EE++KE E
Sbjct: 109 FHEKLLKLKKLMKTEAGKRRAEKRHKFMEEYLKEFYEE 146
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68104100
Number of Sequences: 2977
Number of extensions: 2642401
Number of successful extensions: 7523
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7509
Number of HSP's gapped (non-prelim): 9
length of query: 204
length of database: 189,106,746
effective HSP length: 55
effective length of query: 149
effective length of database: 156,189,961
effective search space: 23272304189
effective search space used: 23272304189
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)