BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1123 (PAB1123) DE:6-pyruvoyl tetrahydrobiopterin synthase
related protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75022 6-pyruvoyl tetrahydrobiopterin synthase related prot...   324  3e-88
sp|O59602|YJ39_PYRHO HYPOTHETICAL PROTEIN PH1939 >gi|7430211|pir...   251  3e-66
emb|CAC12079.1| (AL445066) conserved hypothetical protein [Therm...    73  2e-12

>pir||D75022 6-pyruvoyl tetrahydrobiopterin synthase related protein PAB1123 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5459132|emb|CAB50618.1| (AJ248288) 6-pyruvoyl
           tetrahydrobiopterin synthase related protein [Pyrococcus
           abyssi]
           Length = 157
           
 Score =  324 bits (822), Expect = 3e-88
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MKRVVSIKRRIYWTKEFDSSHFLELEYESKCRRLHGHTYRVEVEIEGEPNEHGMIFDFNH 60
           MKRVVSIKRRIYWTKEFDSSHFLELEYESKCRRLHGHTYRVEVEIEGEPNEHGMIFDFNH
Sbjct: 1   MKRVVSIKRRIYWTKEFDSSHFLELEYESKCRRLHGHTYRVEVEIEGEPNEHGMIFDFNH 60

Query: 61  LSELIKTLDHKVIVSEKWVRYEEGYVLIEKNDKLLKLPRSEVVVIDKPNVTAEYIAEWIS 120
           LSELIKTLDHKVIVSEKWVRYEEGYVLIEKNDKLLKLPRSEVVVIDKPNVTAEYIAEWIS
Sbjct: 61  LSELIKTLDHKVIVSEKWVRYEEGYVLIEKNDKLLKLPRSEVVVIDKPNVTAEYIAEWIS 120

Query: 121 ERILENAGENVREIRVRVWEDPRSYAEITLTLKPQGS 157
           ERILENAGENVREIRVRVWEDPRSYAEITLTLKPQGS
Sbjct: 121 ERILENAGENVREIRVRVWEDPRSYAEITLTLKPQGS 157


>sp|O59602|YJ39_PYRHO HYPOTHETICAL PROTEIN PH1939 >gi|7430211|pir||C71209 hypothetical
           protein PH1939 - Pyrococcus horikoshii
           >gi|3258383|dbj|BAA31066.1| (AP000007) 157aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 157
           
 Score =  251 bits (635), Expect = 3e-66
 Identities = 112/151 (74%), Positives = 135/151 (89%)

Query: 7   IKRRIYWTKEFDSSHFLELEYESKCRRLHGHTYRVEVEIEGEPNEHGMIFDFNHLSELIK 66
           IKR+IYWTKEFDSSHFLELEYESKC+R+HGHTY+VEVEIEGE NE GMIFDF HLSE++K
Sbjct: 7   IKRKIYWTKEFDSSHFLELEYESKCKRIHGHTYKVEVEIEGELNEEGMIFDFTHLSEIVK 66

Query: 67  TLDHKVIVSEKWVRYEEGYVLIEKNDKLLKLPRSEVVVIDKPNVTAEYIAEWISERILEN 126
            LDH++IVS++WV+     V+IEKN K+LK+PR EVV+IDKPNVTAEY+AEW  ERI EN
Sbjct: 67  ELDHRLIVSKEWVKEVGDLVIIEKNRKILKVPRDEVVIIDKPNVTAEYLAEWFGERIAEN 126

Query: 127 AGENVREIRVRVWEDPRSYAEITLTLKPQGS 157
           AG N+++I+VR+WEDPRSYAE+T TL+PQGS
Sbjct: 127 AGSNIKKIKVRIWEDPRSYAEVTFTLEPQGS 157


>emb|CAC12079.1| (AL445066) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 154
           
 Score = 73.0 bits (176), Expect = 2e-12
 Identities = 51/153 (33%), Positives = 83/153 (53%), Gaps = 15/153 (9%)

Query: 12  YWTKEFDSSHFLELEYESKCRRLHGHTYRVEVEIEGEPNEHGMIFDF----NHLSELIKT 67
           Y    F ++HF+   +  KC RLHGH Y V V +EG+  + GM+ DF    N +  +I  
Sbjct: 5   YTNMRFSAAHFIPSHF--KCSRLHGHDYGVIVNVEGDMVD-GMLIDFIELKNAIRSVINE 61

Query: 68  LDHKVIVSEK--WVRYEEGYVLIEKN--DKLLKLPRSEVVVIDKPNVTAEYIAEWISERI 123
           +DHK++V  K    RY+E     E N  +K + +P   V + D  N T+E ++E+I+ R+
Sbjct: 62  MDHKLLVPAKANIARYDEERDEYEINYSNKRMVIPGEFVYLCDVHNTTSEELSEYIARRV 121

Query: 124 LE--NAGENVREIRVRVWEDPRS--YAEITLTL 152
            E     +N+R++ + V E P    Y+E  ++L
Sbjct: 122 GEKLRLKKNIRKLEISVEEGPGQGVYSEAGISL 154


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60453173
Number of Sequences: 2977
Number of extensions: 2372011
Number of successful extensions: 6326
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6323
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 189,106,746
effective HSP length: 53
effective length of query: 104
effective length of database: 157,386,935
effective search space: 16368241240
effective search space used: 16368241240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)