BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1127 (PAB1127) DE:Hypothetical protein
(242 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75023 hypothetical protein PAB1127 - Pyrococcus abyssi (st... 479 e-134
pir||G71209 hypothetical protein PH1943 - Pyrococcus horikoshii ... 356 1e-97
pir||D64504 conserved hypothetical protein MJ1638 - Methanococcu... 102 3e-21
pir||C69134 conserved hypothetical protein MTH271 - Methanobacte... 91 1e-17
>pir||A75023 hypothetical protein PAB1127 - Pyrococcus abyssi (strain Orsay)
>gi|5459137|emb|CAB50623.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 479 bits (1220), Expect = e-134
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MLPRARGFVEEFRLKASLRALERVKEFIEPKAYERLRDLVECRLTGKEFERDKINVKIAV 60
MLPRARGFVEEFRLKASLRALERVKEFIEPKAYERLRDLVECRLTGKEFERDKINVKIAV
Sbjct: 1 MLPRARGFVEEFRLKASLRALERVKEFIEPKAYERLRDLVECRLTGKEFERDKINVKIAV 60
Query: 61 AYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREETLFVEVPGYLEEMEKLIEKR 120
AYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREETLFVEVPGYLEEMEKLIEKR
Sbjct: 61 AYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREETLFVEVPGYLEEMEKLIEKR 120
Query: 121 APICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPAFLSLNKV 180
APICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPAFLSLNKV
Sbjct: 121 APICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPAFLSLNKV 180
Query: 181 DLLSILGWEDYEFKYGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDIAKKLIFDIL 240
DLLSILGWEDYEFKYGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDIAKKLIFDIL
Sbjct: 181 DLLSILGWEDYEFKYGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDIAKKLIFDIL 240
Query: 241 RA 242
RA
Sbjct: 241 RA 242
>pir||G71209 hypothetical protein PH1943 - Pyrococcus horikoshii
>gi|3258387|dbj|BAA31070.1| (AP000007) 243aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 243
Score = 356 bits (904), Expect = 1e-97
Identities = 172/243 (70%), Positives = 209/243 (85%), Gaps = 1/243 (0%)
Query: 1 MLPRARG-FVEEFRLKASLRALERVKEFIEPKAYERLRDLVECRLTGKEFERDKINVKIA 59
MLP ARG F+ EFRL+ASLRALERVK+++ K Y RLR+L+ RL GKEF R KI+ K+A
Sbjct: 1 MLPVARGDFIREFRLRASLRALERVKDYLGEKVYTRLRELLYYRLEGKEFPRGKIDFKMA 60
Query: 60 VAYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREETLFVEVPGYLEEMEKLIEK 119
VAYSGGSDSSATVKILRWAGFDV+PITA+LP I KL EET+FVEVPGY+EEM++LIEK
Sbjct: 61 VAYSGGSDSSATVKILRWAGFDVIPITAKLPQIDWSKLEEETVFVEVPGYMEEMKRLIEK 120
Query: 120 RAPICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPAFLSLNK 179
RAPICGRCHSMVM+ VE K REL I++LATGDMLS+GSGSIY K+ ++ILNLPAFL+L+K
Sbjct: 121 RAPICGRCHSMVMQTVERKARELGIKVLATGDMLSVGSGSIYYKDGIIILNLPAFLALSK 180
Query: 180 VDLLSILGWEDYEFKYGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDIAKKLIFDI 239
+LL IL W+ YE K+GCPLWREAVK+VPIMKRFAIQR+LRE+R G + D+A++LI D+
Sbjct: 181 PELLDILNWKKYELKFGCPLWREAVKKVPIMKRFAIQRILREVRAGVLPRDMARELIMDV 240
Query: 240 LRA 242
L++
Sbjct: 241 LKS 243
>pir||D64504 conserved hypothetical protein MJ1638 - Methanococcus jannaschii
>gi|1500538|gb|AAB99659.1| (U67604) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 260
Score = 102 bits (253), Expect = 3e-21
Identities = 83/249 (33%), Positives = 129/249 (51%), Gaps = 23/249 (9%)
Query: 9 VEEFRLKASLRALERVKEFIEPKAYERLRDLVECRLTG-KEFERDKINVK--IAVAYSGG 65
++E RLK SL LE++ I + E L+ + RL G KEF + I+ K VA+SGG
Sbjct: 15 LKELRLKNSLEILEKLD--INTELKEALKSTLLKRLNGEKEFYKISIDKKPKAVVAFSGG 72
Query: 66 SDSSATVKILRWAGFDVVPITARLPHISKEKLREETL-----------FVEVPGYLEEME 114
DSS + I + FDV ++ +I +++RE FV + LEE+
Sbjct: 73 VDSSTSAIIAKQI-FDVKAVSCYSKYIMTDEMRENAKNIAKKIGISLEFVSID--LEEVY 129
Query: 115 K-LIEKRAPICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPA 173
K ++ + CGRCH ++ AV + +++ + GD+L+ G ++Y ++ + NLP+
Sbjct: 130 KGVVNGKFHPCGRCHKVIENAVIDYAKKIDAEFVIFGDLLAFGYLALYREDEIFRFNLPS 189
Query: 174 FLSLNKVDLLSILGWEDYEFK--YGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDI 231
F +L K + IL E K YGCPL + K K F IQR+LRE+R +NE+
Sbjct: 190 FFALTKDEEREILKNNGIELKMSYGCPLLKIYHKHNKGYK-FTIQRILREVRGRVVNEEE 248
Query: 232 AKKLIFDIL 240
K I +IL
Sbjct: 249 GFKNIVEIL 257
>pir||C69134 conserved hypothetical protein MTH271 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621322|gb|AAB84777.1| (AE000813) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 335
Score = 91.3 bits (223), Expect = 1e-17
Identities = 76/244 (31%), Positives = 118/244 (48%), Gaps = 27/244 (11%)
Query: 14 LKASLRALERVKEFIE-----PKAYERLRDLVECRLTGKEFERDKINVKIAVAYSGGSDS 68
L+ S R L+ ++E ++ P E L +L G E +AVA SGG DS
Sbjct: 98 LEGSFRVLKILEEALKMRMEYPSGLEFLLELSRSGADGPE---------VAVALSGGVDS 148
Query: 69 S----ATVKI-LRWAGFDVVPITARLPHISKEKLREETLFVEVP-----GYLEEMEK-LI 117
S A VK+ LR V P T LP + L E + V L +++ +
Sbjct: 149 SFSLIAAVKLGLRPFALTVDPGTIILPGHIRRSLEELCSLLGVRHEYIGAELGDIQSGAL 208
Query: 118 EKRAPICGRCHSMVMRAVEEKVRELKIRILATGDMLSIGSGSIYEKENLVILNLPAFLSL 177
+ R CGRC ++ V +K+R ++I + GD+LS G S+ + ++ +NLPA +
Sbjct: 209 DGRFHPCGRCSGLIESTVMDKIRNMEIDTVIFGDLLSTGYQSVNVDDGILRVNLPALFAA 268
Query: 178 NKVDLLSILGWEDY--EFKYGCPLWREAVKRVPIMKRFAIQRVLRELRTGAINEDIAKKL 235
+K ++ S+ +GCPL E +R P ++R++IQRVLRE R G + A L
Sbjct: 269 SKQEVRSVASLHGVRSSMNFGCPLLGEVHRRHPHLRRYSIQRVLRETRAGVLEPGEALDL 328
Query: 236 IFDI 239
I+ I
Sbjct: 329 IWSI 332
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84081163
Number of Sequences: 2977
Number of extensions: 3314191
Number of successful extensions: 9224
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9217
Number of HSP's gapped (non-prelim): 4
length of query: 242
length of database: 189,106,746
effective HSP length: 54
effective length of query: 188
effective length of database: 156,788,448
effective search space: 29476228224
effective search space used: 29476228224
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)