BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1130 (PAB1130) DE:Hypothetical protein
         (213 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75023 hypothetical protein PAB1130 - Pyrococcus abyssi (st...   420  e-117

>pir||G75023 hypothetical protein PAB1130 - Pyrococcus abyssi (strain Orsay)
           >gi|5459143|emb|CAB50629.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 213
           
 Score =  420 bits (1069), Expect = e-117
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MKKISYIVILIVVLAGISGCISTKTATSINTSTKNENTQVTTTKLDKIYVSVNKPNYNAT 60
           MKKISYIVILIVVLAGISGCISTKTATSINTSTKNENTQVTTTKLDKIYVSVNKPNYNAT
Sbjct: 1   MKKISYIVILIVVLAGISGCISTKTATSINTSTKNENTQVTTTKLDKIYVSVNKPNYNAT 60

Query: 61  ILVPVEIAEEINEVLSNISVESIEIVVGDENMGIGFNVYAMKFPGTRAMEITIDSKPLRN 120
           ILVPVEIAEEINEVLSNISVESIEIVVGDENMGIGFNVYAMKFPGTRAMEITIDSKPLRN
Sbjct: 61  ILVPVEIAEEINEVLSNISVESIEIVVGDENMGIGFNVYAMKFPGTRAMEITIDSKPLRN 120

Query: 121 GTIVTNNKEPRVTINYNGKIYPGTIVIKDSTPKTKAKYRVRFDEISGRAKLGSLIIPKLD 180
           GTIVTNNKEPRVTINYNGKIYPGTIVIKDSTPKTKAKYRVRFDEISGRAKLGSLIIPKLD
Sbjct: 121 GTIVTNNKEPRVTINYNGKIYPGTIVIKDSTPKTKAKYRVRFDEISGRAKLGSLIIPKLD 180

Query: 181 VTIETFIEKTGESEYKVFIVWNNETIATSYLHR 213
           VTIETFIEKTGESEYKVFIVWNNETIATSYLHR
Sbjct: 181 VTIETFIEKTGESEYKVFIVWNNETIATSYLHR 213


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.133    0.362 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75068526
Number of Sequences: 2977
Number of extensions: 3059740
Number of successful extensions: 8167
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8166
Number of HSP's gapped (non-prelim): 1
length of query: 213
length of database: 189,106,746
effective HSP length: 60
effective length of query: 153
effective length of database: 153,197,526
effective search space: 23439221478
effective search space used: 23439221478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 163 (67.9 bits)