BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1133 1703177 1703626 150 !not a gene!
         (150 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii ...   182  1e-45

>pir||E71076 hypothetical protein PH0877 - Pyrococcus horikoshii
           >gi|3257288|dbj|BAA29971.1| (AP000004) 128aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 128
           
 Score =  182 bits (458), Expect = 1e-45
 Identities = 101/130 (77%), Positives = 106/130 (80%), Gaps = 3/130 (2%)

Query: 22  VASPLIASPPAKTPGIEVIKFSSTIIVPSSLTLS-PGVVLHSILFGVCPIAIITVSASTV 80
           +ASPLIASPPAKTPGIEVI+FSST IVPS L LS P  V+  ILFG  P+AIITVSAS V
Sbjct: 1   MASPLIASPPAKTPGIEVIRFSSTTIVPSGLVLSLPSSVI--ILFGSSPMAIITVSASNV 58

Query: 81  MYSPVPTIFLFPLLSRSSKGFIFSNLTALTLPSSSPMNSTGFTKNMNLTPSSFACCTSSI 140
            YSPVPTIFLFPLLSRSS GF+ SNLTALTLP SSPMNSTG  KN N TPSS AC  SS 
Sbjct: 59  TYSPVPTIFLFPLLSRSSSGFVLSNLTALTLPFSSPMNSTGCRKNSNFTPSSSACFISSS 118

Query: 141 LAVMSSFPLL 150
           LAVMSS PLL
Sbjct: 119 LAVMSSLPLL 128


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.134    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51180865
Number of Sequences: 2977
Number of extensions: 1954663
Number of successful extensions: 7557
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7555
Number of HSP's gapped (non-prelim): 1
length of query: 150
length of database: 189,106,746
effective HSP length: 55
effective length of query: 95
effective length of database: 156,189,961
effective search space: 14838046295
effective search space used: 14838046295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)