BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1134 (PAB1134) DE:Hypothetical protein
(425 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75024 hypothetical protein PAB1134 - Pyrococcus abyssi (st... 869 0.0
sp|O59545|YI75_PYRHO HYPOTHETICAL PROTEIN PH1875 >gi|7429892|pir... 799 0.0
gi|11498846 conserved hypothetical protein [Archaeoglobus fulgid... 356 2e-97
sp|Q58277|Y867_METJA HYPOTHETICAL PROTEIN MJ0867 >gi|2127984|pir... 342 5e-93
sp|O26914|Y826_METTH HYPOTHETICAL PROTEIN MTH826 >gi|7429894|pir... 311 8e-84
pir||C72634 hypothetical protein APE1530 - Aeropyrum pernix (str... 301 1e-80
gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfat... 298 8e-80
gi|8923318 hypothetical protein FLJ20342 [Homo sapiens] >gi|7020... 279 3e-74
gb|AAG27794.1|AC069273_8 (AC069273) unknown protein [Arabidopsis... 273 2e-72
emb|CAC11401.1| (AL445063) hypothetical protein [Thermoplasma ac... 265 7e-70
gb|AAF57870.1| (AE003803) CG6550 gene product [Drosophila melano... 261 8e-69
gb|AAG20063.1| (AE005086) Vng1861c [Halobacterium sp. NRC-1] 250 3e-65
pir||D72352 conserved hypothetical protein - Thermotoga maritima... 227 2e-58
pir||B72328 conserved hypothetical protein - Thermotoga maritima... 223 3e-57
sp|P73127|Y996_SYNY3 HYPOTHETICAL 51.0 KD PROTEIN SLL0996 >gi|74... 208 1e-52
pir||G72201 conserved hypothetical protein - Thermotoga maritima... 202 6e-51
dbj|BAB06091.1| (AP001515) unknown conserved protein [Bacillus h... 199 6e-50
sp|O31778|YMCB_BACSU HYPOTHETICAL 58.2 KDA PROTEIN IN KLB-COTE I... 197 2e-49
sp|O66772|Y474_AQUAE HYPOTHETICAL PROTEIN AQ_474 >gi|7429889|pir... 193 3e-48
gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum] 192 8e-48
pir||E82261 conserved hypothetical protein VC0962 [imported] - V... 185 1e-45
sp|O66638|Y284_AQUAE HYPOTHETICAL PROTEIN AQ_284 >gi|7429890|pir... 182 7e-45
sp|O33238|YR33_MYCTU HYPOTHETICAL 55.1 KDA PROTEIN RV2733C >gi|7... 182 9e-45
sp|P54462|YQEV_BACSU HYPOTHETICAL 51.7 KD PROTEIN IN DNAJ-RPSU I... 179 5e-44
pir||T35107 hypothetical protein SC4H2.08 SC4H2.08 - Streptomyce... 177 2e-43
dbj|BAB05070.1| (AP001511) unknown conserved protein [Bacillus h... 176 4e-43
sp|P57516|Y441_BUCAI HYPOTHETICAL PROTEIN BU441 >gi|10039105|dbj... 174 2e-42
sp|P77645|YLEA_ECOLI HYPOTHETICAL 53.7 KD PROTEIN IN CUTE-GLNX I... 173 4e-42
sp|Q57163|YLEA_HAEIN HYPOTHETICAL PROTEIN HI0019 >gi|1074226|pir... 172 8e-42
gb|AAF68426.1|AF237940_1 (AF237940) conserved hypothetical prote... 171 1e-41
emb|CAB62263.1| (AJ249116) MiaB protein [Salmonella typhimurium] 170 3e-41
pir||F83147 conserved hypothetical protein PA3980 [imported] - P... 169 4e-41
sp|Q51470|YHE2_PSEAE HYPOTHETICAL 50.0 KD PROTEIN IN HEML 3'REGI... 169 7e-41
pir||G72101 conserved hypothetical protein - Chlamydophila pneum... 168 9e-41
pir||A81571 conserved hypothetical protein CP0510 [imported] - C... 168 9e-41
dbj|BAA98461.1| (AP002545) conserved hypothetical protein [Chlam... 168 9e-41
pir||F82747 conserved hypothetical protein XF0906 [imported] - X... 168 1e-40
sp|O67016|Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 >gi|7429891|pir... 166 3e-40
sp|Q9ZCE8|Y808_RICPR HYPOTHETICAL PROTEIN RP808 >gi|7445345|pir|... 166 5e-40
sp|P56131|Y269_HELPY HYPOTHETICAL PROTEIN HP0269 >gi|7429884|pir... 164 1e-39
sp|Q9ZMG6|Y269_HELPJ HYPOTHETICAL PROTEIN HP0269/JHP0254 >gi|744... 164 1e-39
sp|Q49842|YR33_MYCLE HYPOTHETICAL 56.0 KDA PROTEIN B2235_C2_195 ... 162 5e-39
sp|Q49573|Y16R_MYCIO HYPOTHETICAL 51.3 KD PROTEIN IN 16S RNA 5'R... 161 2e-38
pir||C81034 conserved hypothetical protein NMB1866 [imported] - ... 160 3e-38
pir||E81390 hypothetical protein Cj0458c [imported] - Campylobac... 160 3e-38
pir||C81978 hypothetical protein NMA0590 [imported] - Neisseria ... 159 4e-38
sp|P75802|YLIG_ECOLI HYPOTHETICAL 49.6 KDA PROTEIN IN MOEA-DACC ... 156 5e-37
pir||H75431 conserved hypothetical protein - Deinococcus radiodu... 153 3e-36
gb|AAF54531.1| (AE003687) CG6345 gene product [Drosophila melano... 153 4e-36
sp|Q55803|Y082_SYNY3 HYPOTHETICAL 49.4 KD PROTEIN SLR0082 >gi|74... 151 2e-35
emb|CAB16849.1| (Z99708) putative protein [Arabidopsis thaliana]... 150 3e-35
pir||E81291 hypothetical protein Cj1454c [imported] - Campylobac... 150 3e-35
sp|Q9ZDB6|Y416_RICPR HYPOTHETICAL PROTEIN RP416 >gi|7429898|pir|... 146 6e-34
pir||H82054 conserved hypothetical protein VC2620 [imported] - V... 145 7e-34
sp|Q09316|YQT5_CAEEL HYPOTHETICAL 61.3 KD PROTEIN F25B5.5 IN CHR... 139 6e-32
sp|Q9ZMF0|Y285_HELPJ HYPOTHETICAL PROTEIN HP0285/JHP0270 >gi|744... 139 7e-32
pir||G72074 hypothetical protein - Chlamydophila pneumoniae (str... 138 1e-31
pir||G81594 conserved hypothetical protein CP0277 [imported] - C... 138 1e-31
sp|P56130|Y285_HELPY HYPOTHETICAL PROTEIN HP0285 >gi|7429897|pir... 138 2e-31
pir||C81376 hypothetical protein Cj1006c [imported] - Campylobac... 138 2e-31
gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha] 135 1e-30
sp|O83735|Y754_TREPA HYPOTHETICAL PROTEIN TP0754 >gi|7429896|pir... 134 1e-30
pir||T35685 hypothetical protein SC7C7.07 SC7C7.07 - Streptomyce... 134 1e-30
pir||G83532 conserved hypothetical protein PA0916 [imported] - P... 134 2e-30
dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sapiens] 133 4e-30
gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding prote... 132 9e-30
emb|CAC15883.1| (AL355392) dJ1187J4.4 (novel protein (CGI-05) si... 125 1e-27
pir||E75615 conserved hypothetical protein - Deinococcus radiodu... 124 2e-27
emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella succi... 122 6e-27
gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [Zymom... 122 6e-27
gi|7706357 CGI-05 protein; hypothetical protein [Homo sapiens] >... 116 4e-25
gi|7705485 CGI-05 protein; hypothetical protein [Homo sapiens] >... 114 2e-24
sp|O83293|Y269_TREPA HYPOTHETICAL PROTEIN TP0269 >gi|7429895|pir... 111 2e-23
pir||T10441 conserved hypothetical protein - Mycoplasma iowae >g... 110 3e-23
pir||E71902 hypothetical protein jhp0671 - Helicobacter pylori (... 108 1e-22
pir||F64611 conserved hypothetical protein HP0734 - Helicobacter... 99 9e-20
pir||A72408 conserved hypothetical protein - Thermotoga maritima... 69 7e-11
>pir||D75024 hypothetical protein PAB1134 - Pyrococcus abyssi (strain Orsay)
>gi|5459148|emb|CAB50634.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 425
Score = 869 bits (2220), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR
Sbjct: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
IKELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDW
Sbjct: 61 IKELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI
Sbjct: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
Query: 181 KQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE 240
KQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE
Sbjct: 181 KQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
Query: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360
GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI
Sbjct: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360
Query: 361 SYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLL 420
SYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLL
Sbjct: 361 SYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLL 420
Query: 421 GEVMS 425
GEVMS
Sbjct: 421 GEVMS 425
>sp|O59545|YI75_PYRHO HYPOTHETICAL PROTEIN PH1875 >gi|7429892|pir||F71200 hypothetical
protein PH1875 - Pyrococcus horikoshii
>gi|3258314|dbj|BAA30997.1| (AP000007) 432aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 432
Score = 799 bits (2041), Expect = 0.0
Identities = 379/425 (89%), Positives = 410/425 (96%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
MVK+YIENYGCARNRADGEIMAALL+L+GHEIV P+E EIVVVNSCAVKDPTERKIARR
Sbjct: 8 MVKVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARR 67
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
I+ELLD+GKKVIVTGCLPHVNPDVIDERVS ILGVKSIDRI+QAVEYA+RGEKLISVPDW
Sbjct: 68 IRELLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDW 127
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
+KRNLDKLDFPRLSPR VYFI+PIAEGCLNACTYCATR ARGVLKSYSPEKI+GWVKWAI
Sbjct: 128 KKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAI 187
Query: 181 KQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE 240
KQGYKEIWLSAEDTGCYGFDIGTNLAKL+DEITAIEGEFR+RVGMMNPNHVLKFLDELI+
Sbjct: 188 KQGYKEIWLSAEDTGCYGFDIGTNLAKLIDEITAIEGEFRIRVGMMNPNHVLKFLDELID 247
Query: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
AY+DEK+YKFLHLPVQSGDN+ILR+MGR YTVEEFEEIVK FR++FP+LNLHTDIIVGFP
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307
Query: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360
GE +EAFQRSVELI+RIRPDKVNVSRYSPRPGTIAAKWKQLPGW+VKERSRLLHRIRLQI
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 367
Query: 361 SYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLL 420
SYEIN+KYIGKKV+VLIHGEGKKGNVDAVTMNYKH+ILP G GEFR A +KNA STYLL
Sbjct: 368 SYEINRKYIGKKVKVLIHGEGKKGNVDAVTMNYKHIILPEGRKGEFREARVKNAASTYLL 427
Query: 421 GEVMS 425
GE+++
Sbjct: 428 GEIIT 432
>gi|11498846 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6226417|sp|O29021|YC47_ARCFU HYPOTHETICAL PROTEIN
AF1247 >gi|7429893|pir||F69405 conserved hypothetical
protein AF1247 - Archaeoglobus fulgidus
>gi|2649334|gb|AAB89997.1| (AE001018) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 405
Score = 356 bits (905), Expect = 2e-97
Identities = 190/401 (47%), Positives = 264/401 (65%), Gaps = 10/401 (2%)
Query: 27 LAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGKKVIVTGCLPHVNPDVID 86
L+G + ++ E+V++NSC V D TERKI RR+ +L GKKV++ GCL ++ + +
Sbjct: 5 LSGEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALS 64
Query: 87 ERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKRNLDKLDFPRLSPR---TVYFIVP 143
S L ++D ++ AV AL G KL + +R +DK +F L R IV
Sbjct: 65 VADSA-LSPDNLDMVVDAVYSALNGRKLFT----ERRFIDKAEFSHLKCRLRENAIAIVS 119
Query: 144 IAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIG- 202
I+EGCL C++CAT+FARG L+S+S + IV + A++ GY+EI L+++DTG YG D G
Sbjct: 120 ISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGR 179
Query: 203 TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDI 262
L +LL +I+ IEGEFRVRVGMMNP H ++ LDELI AY EKIYKFLH+PVQSGDN I
Sbjct: 180 AMLPELLRKISEIEGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRI 239
Query: 263 LRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKV 322
L M RN+TVE++ E+V+ FR F D+ + TDIIVGFP E +EAF +S ELI+ RPD V
Sbjct: 240 LEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIV 299
Query: 323 NVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK 382
N++RYS R GT AA+ + +PGWI KERSR L + +I E N++++GKK+ VL+ EGK
Sbjct: 300 NITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRVLVTKEGK 359
Query: 383 KGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLLGEV 423
G + MN ++ G GEF +IK+ YL+G++
Sbjct: 360 NGR-NLARMNSYRAVVTEGAVGEFVEVKIKDCRFNYLIGQL 399
>sp|Q58277|Y867_METJA HYPOTHETICAL PROTEIN MJ0867 >gi|2127984|pir||C64408 hypothetical
protein HI0019 homolog - Methanococcus jannaschii
>gi|1591550|gb|AAB98872.1| (U67530) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 427
Score = 342 bits (868), Expect = 5e-93
Identities = 191/427 (44%), Positives = 269/427 (62%), Gaps = 16/427 (3%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+++Y+E YGC N AD EI+ L G E+V + +E +I ++N+C V+ TE ++ RI
Sbjct: 12 MRVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRI 71
Query: 62 KELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVP--- 118
EL + GK+V+V GCLP + +V G L + + EK +P
Sbjct: 72 NELKNLGKEVVVAGCLPKA----LKNKVKGFLHIYPREAHKAGEILKNYVEKHYRMPYIE 127
Query: 119 -DWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
D K KLD+ + S T +PI EGC+ C+YC + ARG L SY EKIV K
Sbjct: 128 EDINKTLYKKLDYLKPSLITP---LPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAK 184
Query: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDE 237
I +G K + ++A+DT CYGFDIG NLA LL+E+T I+GEF +RVGMM+ + LDE
Sbjct: 185 ELINKGAKCLLITAQDTACYGFDIGDNLANLLNELTQIKGEFIMRVGMMHAKNAELILDE 244
Query: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
LIE YQ+EK+ KFLHLP+QSGD++IL+RM R YTV+EF++IV EFR+K +L TDIIV
Sbjct: 245 LIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDIIV 304
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
GFPGE +E FQ ++E++R ++PD ++ ++YS R GT AAK KQ+ I K RS +L ++R
Sbjct: 305 GFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEILDKLR 364
Query: 358 LQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNATST 417
++SY N+KYIGK ++VL+ EGK T N+K V G GEFR +I +A +
Sbjct: 365 RELSYLNNKKYIGKAMKVLVLDEGK-----GYTDNFKVVKFEGGEVGEFRKVKITDAKTF 419
Query: 418 YLLGEVM 424
L GE++
Sbjct: 420 GLKGELI 426
>sp|O26914|Y826_METTH HYPOTHETICAL PROTEIN MTH826 >gi|7429894|pir||B69210 conserved
hypothetical protein MTH826 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621916|gb|AAB85324.1| (AE000860) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 424
Score = 311 bits (789), Expect = 8e-84
Identities = 163/428 (38%), Positives = 261/428 (60%), Gaps = 14/428 (3%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+++YIE +GC N+AD EIMA +L G ++ D+ +++++N+C VK PTE K+ RI
Sbjct: 4 IRVYIETFGCTFNQADSEIMAGVLREEG-AVLTGIDDADVIIINTCYVKHPTEHKVINRI 62
Query: 62 KELLDS--GKKVIVTGCLPHVNPDVIDERVSGI---LGVKSIDRIIQAVEYALRG--EKL 114
K++ ++ K ++V GC+ ++P + E +SG LG + R QAV A G E++
Sbjct: 63 KKIQETYPEKGLVVAGCMVEIDPSKL-EAISGDASWLGPHQLRRAPQAVRAASNGLVERI 121
Query: 115 ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
+ K+ PR+ + I+PI EGC +C+YC TRFARG ++SY + I+
Sbjct: 122 TGFT-----SDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIIS 176
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKF 234
+ A+ G +EI L+A+DT YG D G L+ ++ I+ I G FR+RVGMM+P VL+
Sbjct: 177 EAREAVASGCREIQLTAQDTAAYGVDTGEKLSDIIKGISGIPGNFRIRVGMMHPASVLRD 236
Query: 235 LDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTD 294
LD L+EA++ EK+Y FLHLPVQSG + +L M R +TV+EF IV+ FR + PD+++ TD
Sbjct: 237 LDGLVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATD 296
Query: 295 IIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLH 354
IIVG+P E+ E F + L+ ++P +++S+Y RP ++ ++ ++ RSR L
Sbjct: 297 IIVGYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALE 356
Query: 355 RIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNSGEFRIAEIKNA 414
++++I+ E N++ +G E+L+ G+KG T +Y V+ G G FR I++A
Sbjct: 357 ELKMRITEEENRRLVGSFQEILVVERGRKGGFIGRTGSYIPVVTETGEPGSFRRVRIRDA 416
Query: 415 TSTYLLGE 422
T TYLL +
Sbjct: 417 TGTYLLAD 424
>pir||C72634 hypothetical protein APE1530 - Aeropyrum pernix (strain K1)
>gi|5105215|dbj|BAA80529.1| (AP000061) 456aa long
hypothetical protein [Aeropyrum pernix]
Length = 456
Score = 301 bits (762), Expect = 1e-80
Identities = 166/421 (39%), Positives = 263/421 (62%), Gaps = 14/421 (3%)
Query: 5 YIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKEL 64
Y+E YGC+ + D IMA+ L AG+ V P++ ++++VN+CAV+ TE++IA R+++L
Sbjct: 27 YLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAERLEKL 86
Query: 65 LDS--GKKVIVTGCLPHVNPDVIDERV--SGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
+K +V GCL P ++ V + +L ++++R++ AV+ G +L+ V D
Sbjct: 87 RLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLV-VLDG 145
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
R+ D P+L V I EGCL C++C T+ AR ++SYSP IV V+ A+
Sbjct: 146 RR---DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREAV 202
Query: 181 KQGYKEIWLSAEDTGCYGFDIG--TNLAKLLDEITA-IEGEFRVRVGMMNPNHVLKFLDE 237
++G +EI L+ D YG D+ NLA L+ I +EG++R+RVGMM P+ V +LD
Sbjct: 203 EKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKVEGDYRIRVGMMTPDQVEPYLDS 262
Query: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
L++ Y+DE++YK+ HLPVQSGD+++L+ M RNYTV E++ I + + +FPD + TDIIV
Sbjct: 263 LLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATDIIV 322
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
G PGE EAF +V L+ +R +KV++++YS RP T AA +Q+P + KERSR+L +I
Sbjct: 323 GHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSRILGKIV 382
Query: 358 LQISYEINQKYIGKKVEVLI-HGEGKKGNVDAVTMNYKHVILPFGN--SGEFRIAEIKNA 414
+I EIN Y+G++V L+ ++G++ NY +ILP+ G + AE++ A
Sbjct: 383 AEIGLEINGSYVGRRVRALVTERSWREGSMTGRLDNYTPIILPYEERAMGRWVYAEVEEA 442
Query: 415 T 415
T
Sbjct: 443 T 443
>gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 421
Score = 298 bits (755), Expect = 8e-80
Identities = 153/405 (37%), Positives = 254/405 (61%), Gaps = 19/405 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M IY+E YGCA NRAD +M LL G+ V +P+ +I+++N+CAV+ TE ++ +R
Sbjct: 1 MKNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQR 60
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVIDERV--SGILGVKSIDRIIQAVEYALRGEKLISVP 118
IKEL KK++V GC+ P + + ++G +S++RI+ V+ R K++
Sbjct: 61 IKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVKSEER--KIVIEG 118
Query: 119 DWRKRNLDKLDFPRLSPRTV---YFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
D R L ++PRT I+P+A+GC C++C T+ AR L+SY +IV
Sbjct: 119 D---RAL-------ITPRTFDGKIAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNA 168
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIG--TNLAKLLDEITAIEGEFRVRVGMMNPNHVLK 233
+ AI+ G +EI L+ +DT YG D+G +L +++++ I+G+F +R+GMM P ++
Sbjct: 169 ARDAIQSGAREIELTGQDTAAYGLDLGGSISLVDVVNKVADIDGDFMIRIGMMTPEQAMR 228
Query: 234 FLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHT 293
+D+LIEA ++ K+YKF+HLPVQSGD+ +L+ M R YTV+E++E++ E R K P +N+ T
Sbjct: 229 IMDDLIEAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITT 288
Query: 294 DIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLL 353
DIIVG PGED+EAF ++ L++ +R ++++++ YS RP T +A Q+P I K+R ++
Sbjct: 289 DIIVGHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIA 348
Query: 354 HRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVIL 398
+++ ++ I+ Y+G V+ G+KG+V MNY V++
Sbjct: 349 NKLYEDLALSIHLDYVGSTSRVITTELGRKGSVIGRLMNYIPVVI 393
>gi|8923318 hypothetical protein FLJ20342 [Homo sapiens]
>gi|7020375|dbj|BAA91102.1| (AK000349) unnamed protein
product [Homo sapiens]
Length = 579
Score = 279 bits (707), Expect = 3e-74
Identities = 144/383 (37%), Positives = 232/383 (59%), Gaps = 7/383 (1%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI+I +GC+ N +DGE MA L G++I + + ++ ++NSC VK+P E IK
Sbjct: 65 KIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIK 124
Query: 63 ELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGE--KLISVPDW 120
+ + KK+++ GC+P P + I+GV+ IDR+++ VE ++G +L+
Sbjct: 125 KAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 184
Query: 121 RKRNLD--KLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKW 178
R L +LD P++ + I+ I+ GCLNACTYC T+ ARG L SY +++V K
Sbjct: 185 NGRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQ 244
Query: 179 AIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGE-FRVRVGMMNPNHVLKFLDE 237
+ ++G EIWL++EDTG YG DIGTNL LL ++ + E +R+GM NP ++L+ L+E
Sbjct: 245 SFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEE 304
Query: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
+ + ++Y FLH+PVQS + +L M R Y V +F+ +V ++K P + + TDII
Sbjct: 305 MAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIIC 364
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
GFPGE D+ FQ +V+L+ + + ++++ PRPGT AAK +Q+P + K+R++ L R+
Sbjct: 365 GFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV- 423
Query: 358 LQISYEINQKYIGKKVEVLIHGE 380
SY IG++ +VL+ E
Sbjct: 424 -FHSYSPYDHKIGERQQVLVTEE 445
>gb|AAG27794.1|AC069273_8 (AC069273) unknown protein [Arabidopsis thaliana]
Length = 601
Score = 273 bits (692), Expect = 2e-72
Identities = 140/353 (39%), Positives = 214/353 (59%), Gaps = 6/353 (1%)
Query: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
IYI+ +GC+ N++D E MA L G+ + P+E ++ ++N+C VK P++ ++ I
Sbjct: 66 IYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLITR 125
Query: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
K +++ GC+P + D+ + ++GV+ IDR+++ VE L+G ++ + ++
Sbjct: 126 GRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRLLT---RK 182
Query: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ + +V V+ I +G
Sbjct: 183 TLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTVISEG 242
Query: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
KEIWLS+EDTG YG DIG NL LL+ I + +R+GM NP +L+ L E+
Sbjct: 243 VKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLKEIAA 302
Query: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
+ +Y FLH+PVQSG + +L M R YT EF +V + P + + TDII GFP
Sbjct: 303 VLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDIICGFP 362
Query: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLL 353
GE DE F ++VELI+ + +V++S++ PRPGT AAK K++ IVK+RSR L
Sbjct: 363 GETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSREL 415
>emb|CAC11401.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 265 bits (670), Expect = 7e-70
Identities = 150/426 (35%), Positives = 239/426 (55%), Gaps = 29/426 (6%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+KIY E YGC N+ + + L G +V PDE +I ++ +CAV TE + +RI
Sbjct: 1 MKIYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRI 60
Query: 62 KELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDR--IIQAVEYALRGEKLISVPD 119
+EL G+ V V GCL + +SG +++IDR Q EY
Sbjct: 61 EELSRLGR-VKVIGCLSAIK----GSEISGG-NIEAIDRNEFQQFQEY------------ 102
Query: 120 WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWA 179
L+ + + +PI +GC C +C + ARG L S PEKIV ++
Sbjct: 103 --------LEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMM 154
Query: 180 IKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELI 239
+ G +EI +S+ DT YG D G L L+ +ITA++G+F +RVGMM P + ++ LD+L+
Sbjct: 155 VAAGKREIRISSLDTAAYGKDTGYRLPSLIKDITAVDGDFMLRVGMMEPRNTIEILDDLL 214
Query: 240 EAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGF 299
EAY D K++KFLH+PVQSGD+ +L M R YTV+EF +I++ FRK+FPD+ + TD+I+G+
Sbjct: 215 EAYDDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGY 274
Query: 300 PGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQ 359
E+D +F + +LIR+++P+ +NV+R+SPR T + + P ++K++ R + I +
Sbjct: 275 HAENDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRK 334
Query: 360 ISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPF-GNSGEFRIAEIKNATSTY 418
I E +GK +LI +GK G + +Y+ V++ + A I +T
Sbjct: 335 IVSERFSALVGKVERILITEDGKPGTMVGRDASYRPVVIRAPAEKYTWHSARIIGYENTS 394
Query: 419 LLGEVM 424
L+GE++
Sbjct: 395 LIGELV 400
>gb|AAF57870.1| (AE003803) CG6550 gene product [Drosophila melanogaster]
Length = 552
Score = 261 bits (661), Expect = 8e-69
Identities = 147/431 (34%), Positives = 248/431 (57%), Gaps = 12/431 (2%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K++++ +GCA N +D E MA L G+ + +E ++ ++NSC VK+P+E I+
Sbjct: 72 KVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTFRNEIE 130
Query: 63 ELLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRK 122
+ +GK V+V GC+P P ++GV+ IDR+++ VE L+G + + + +K
Sbjct: 131 SGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKK 190
Query: 123 RNLDK-----LDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
+ + L P++ + I+ I GCLN CTYC T+ ARG L SY PE++V +
Sbjct: 191 VHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR 250
Query: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEF-RVRVGMMNPNHVLKFLD 236
+ +G EIWL++EDTG YG DIG++L +LL ++ + E +RVGM NP ++L+ L+
Sbjct: 251 QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMTNPPYILEHLE 310
Query: 237 ELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
E+ Q ++Y FLH+PVQSG + +L M R Y ++FE +V R++ P + + TDII
Sbjct: 311 EVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATDII 370
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRI 356
GFP E ++ F+ ++ L + R + ++++ PRPGT AAK ++P +VK+R++ L
Sbjct: 371 CGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKRTKRL--T 428
Query: 357 RLQISYEINQKYIGKKVEVLI-HGEGKKGNVDAVTMNYKHVILPFGNS--GEFRIAEIKN 413
L SYE +G+ VL+ K + +Y+ V+LP ++ G I +
Sbjct: 429 DLFYSYEPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITS 488
Query: 414 ATSTYLLGEVM 424
A+ ++GE++
Sbjct: 489 ASKFSMVGEIL 499
>gb|AAG20063.1| (AE005086) Vng1861c [Halobacterium sp. NRC-1]
Length = 432
Score = 250 bits (631), Expect = 3e-65
Identities = 156/431 (36%), Positives = 232/431 (53%), Gaps = 25/431 (5%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M + +IE YGC NR + + L AGH V + ++ ++N+C V + TER + RR
Sbjct: 1 MARYHIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRR 60
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVI-DERVSGILGVKSIDRIIQAVEYALRGEKLISVPD 119
KEL D +IVTGC+ + D V V D + +AV GE + PD
Sbjct: 61 AKELADETADLIVTGCMALAQGEAFADADVDA--QVLHWDDVPEAVT---NGECPTTTPD 115
Query: 120 WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWA 179
P L V I+PIA GC++ C+YC T+ A G + S E+ V +
Sbjct: 116 AE---------PILDG--VVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARAL 164
Query: 180 IKQGYKEIWLSAEDTGCYGFDIGTN-LAKLLDEI-TAIEGEFRVRVGMMNPNHVLKFLDE 237
+ G KEI ++ +DTG YG+D G L +LL+ I T IEGEFRVRVGM NP V +E
Sbjct: 165 VHAGAKEIRITGQDTGVYGWDTGERKLPELLERIATEIEGEFRVRVGMANPGGVHGIREE 224
Query: 238 LIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
L + + ++IY FLH PVQSG +D+L M R + V ++ +IV+ F + L TD I
Sbjct: 225 LAAVFAEHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFI 284
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRI 356
VGFP EDD+ + S++L+R RP+K+NV+R+S RPGT AA+ K L G K+RS+ + +
Sbjct: 285 VGFPTEDDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTEL 344
Query: 357 RLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS-----GEFRIAEI 411
++ + E ++ +G + +VL+ EG +V Y+ VI+ G+F E+
Sbjct: 345 KMDVVGEAHESMVGTRRDVLVVEEGTGDSVKCYDGAYRQVIVQNATDHGLEPGDFATVEV 404
Query: 412 KNATSTYLLGE 422
+ + Y E
Sbjct: 405 TSHQTVYAFAE 415
>pir||D72352 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981175|gb|AAD35737.1|AE001738_17 (AE001738)
conserved hypothetical protein [Thermotoga maritima]
Length = 443
Score = 227 bits (573), Expect = 2e-58
Identities = 143/439 (32%), Positives = 241/439 (54%), Gaps = 25/439 (5%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
++ YI+ +GC N D E MA LL G P+E ++V++N+CAV+ +E K +
Sbjct: 1 MRFYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSEL 60
Query: 62 KELLDSGKK----VIVTGCLPHVNPD-VIDERVSGILGVKSIDRIIQAVEYALRGEKLIS 116
++L KK V V GC+ + +++ +LG +++ R+ +AV+ AL GEK+
Sbjct: 61 GQVLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVAL 120
Query: 117 VPDWRKRNLDKL--DFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
D +LD+ + PR+ + V I GC CTYC + RG +S I+
Sbjct: 121 FED----HLDEYTHELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILE 176
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDI--GTNLAKLLDEITAIEGEFRVRVGMMNPNHVL 232
VK +QGY+E+ ++ YG D+ G++LAKLL+E + IEG R+ P
Sbjct: 177 EVKKLAEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTD-- 234
Query: 233 KFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
F DELIE ++ K+ K +HLPVQSG N IL+ M R YT EE+ ++++ R K P++ +
Sbjct: 235 -FSDELIEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAI 293
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW--KQLPGWIVKER 349
+DIIVGFP E +E F +V+L+ + + +++N++ YSPR GT+A K+ +P R
Sbjct: 294 SSDIIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRR 353
Query: 350 SRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS----GE 405
+ L ++ +I+ ++N++Y GK V +++ + K G + ++ I+ F G
Sbjct: 354 MQFLMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLF--YGRDIRNKIIAFEGEDWMIGR 411
Query: 406 FRIAEIKNATSTYLLGEVM 424
F +++ T+ L G+V+
Sbjct: 412 FADVKVEKITAGPLYGKVV 430
>pir||B72328 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981362|gb|AAD35912.1|AE001750_6 (AE001750)
conserved hypothetical protein [Thermotoga maritima]
Length = 434
Score = 223 bits (562), Expect = 3e-57
Identities = 146/421 (34%), Positives = 235/421 (55%), Gaps = 17/421 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M + IE +GC N+ + E MA L AG+ ++ D + +VNSCAV E+K+ R
Sbjct: 1 MKTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRL 59
Query: 61 IKELLDSGK--KVIVTGCLPHVNPDVIDER-VSGILGVKSIDRIIQAVEYALRGEKLISV 117
IK + + K K+I+TGC ++PD V +LG+ I+ + +L G++ + V
Sbjct: 60 IKSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVV 118
Query: 118 PDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGV-LKSYSPEKIVGWV 176
+ + +K+ RT +I + +GC N CTYCA R ARG ++S E
Sbjct: 119 SEPGRPVYEKVK-GSFEDRTRSYI-KVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEF 176
Query: 177 KWAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLD 236
+ +GYKEI ++ + G YG D+G++LA+LL I + G++RVR+ +N V D
Sbjct: 177 AEMVMKGYKEIVITGVNLGKYGKDMGSSLAELLKVIEKVPGDYRVRLSSINVEDVN---D 233
Query: 237 ELIEAYQ-DEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDI 295
E+++A++ + ++ LH+ VQSG +D+L+RMGR Y + +F +V + R PD ++ TDI
Sbjct: 234 EIVKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDI 293
Query: 296 IVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERSRLLH 354
IVGFPGE D FQR++EL+ ++ +V++ R+SPRPGT A++ + +P KER +L
Sbjct: 294 IVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLK 353
Query: 355 RIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNY-KHVILPFGNS-GEFRIAEIK 412
+S ++ IGK+ +VL KG + Y KH + GN GEF +K
Sbjct: 354 EKAKDVSIRYRKRIIGKERKVLAEWYVMKGVLSGYDEYYVKHEFV--GNRVGEFHSVRVK 411
Query: 413 N 413
+
Sbjct: 412 S 412
>sp|P73127|Y996_SYNY3 HYPOTHETICAL 51.0 KD PROTEIN SLL0996 >gi|7429882|pir||S75239
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1652230|dbj|BAA17153.1| (D90904) hypothetical
protein [Synechocystis sp.]
Length = 451
Score = 208 bits (524), Expect = 1e-52
Identities = 129/400 (32%), Positives = 217/400 (54%), Gaps = 25/400 (6%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI- 61
+ +I +GC N+AD E MA +L G DP++ ++V+ N+C+++D E+K+ +
Sbjct: 7 RYHIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLG 66
Query: 62 ----KELLDSGKKVIVTGCLPHVNPDVIDERVSG---ILGVKSIDRIIQAVEYALRGEKL 114
++ ++ ++V GC+ + + RV ++G + +R+ Q +E G ++
Sbjct: 67 RQAKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQV 126
Query: 115 ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
++ ++ + PR TV V I GC C+YC RGV +S +PE I G
Sbjct: 127 VATESLHI--MEDITKPRRES-TVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYG 183
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDI-GTN--------LAKLLDEITAIEGEFRVRVGM 225
++ +QG+KE+ L ++ YG D+ GT L LL + IEG R+R
Sbjct: 184 EMEVLAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFAT 243
Query: 226 MNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+P + F + LI+A Q+ K+ + H+P QSGDNDIL+ M R YT E++ +I+++ R+
Sbjct: 244 SHPRY---FTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRR 300
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPG 343
PD + D+IVGFPGE + F+ ++ LI + D +N + YSPRPGT AA W QL
Sbjct: 301 YMPDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSE 360
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK 383
+ +R + L+ + + E +Q+Y+G+ EVL+ GE K
Sbjct: 361 EVKGDRLQRLNHLVSTQAMERSQRYLGRVEEVLVEGENLK 400
>pir||G72201 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982447|gb|AAD36924.1|AE001823_6 (AE001823)
conserved hypothetical protein [Thermotoga maritima]
Length = 430
Score = 202 bits (509), Expect = 6e-51
Identities = 131/395 (33%), Positives = 221/395 (55%), Gaps = 25/395 (6%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+++ I+ GC +N AD E++A +L GHEIV+D + ++VV+++CA + +R+ I
Sbjct: 1 MRVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEI 60
Query: 62 KELLDS----GKKVIVTGCLPHVNPDVIDERVSGI---LGVKSIDRIIQAVEYA--LRGE 112
+D+ G K++V GCL + + + + + +GV + I A+E L +
Sbjct: 61 FSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIENGTDLVPD 120
Query: 113 KLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKI 172
+ +V +RKR +D + P Y V I++GC CT+C+ +G L+S S E I
Sbjct: 121 QPETVYRYRKR-IDLEERP-------YAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDI 172
Query: 173 VGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTN--LAKLLDEITAIEGEFRVRVGMMNPNH 230
V+ +K+G KEI L A+DT YG D+ L LL + ++ GEF +RV ++P+H
Sbjct: 173 TREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDH 232
Query: 231 VLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDL 289
+ +E+I A + +K+ K+ +PVQ G + IL+ MGR + EE ++++ R++FPD
Sbjct: 233 LT---EEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDA 289
Query: 290 NLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQ-LPGWIVKE 348
L T IIVGFPGE +E F+ + + I+ DK+ YS GT+A K+ + + K
Sbjct: 290 VLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKR 349
Query: 349 RSRLLHRIRLQISYEINQKYIGKKVEVLIHG-EGK 382
R L ++ +IS +++GKK++ L+ G EGK
Sbjct: 350 RQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGK 384
>dbj|BAB06091.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 538
Score = 199 bits (500), Expect = 6e-50
Identities = 132/396 (33%), Positives = 201/396 (50%), Gaps = 20/396 (5%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K + YGC N D E MA +L G E + + +++++N+CA+++ E K+ I
Sbjct: 96 KFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEIG 155
Query: 63 ELLDSGKK-----VIVTGCLPHVNPDVI-----DERVSGILGVKSIDRIIQAVEYALRGE 112
L ++ + V GC+ V + + I G +I R+ + AL G+
Sbjct: 156 NLKQLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRNALFGK 215
Query: 113 KLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKI 172
++I + W K + PR V I GC CTYC + RG +S PE I
Sbjct: 216 EMI-IEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDI 274
Query: 173 VGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT---NLAKLLDEITAIEGEFRVRVGMMNPN 229
+ V+ +QGYKEI L ++ YG D+ L L+DEI I+ RVR +
Sbjct: 275 IQEVRDLARQGYKEITLLGQNVNAYGKDLADLDYGLGDLMDEIRKIDIP-RVR---FTTS 330
Query: 230 HVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPD 288
H F D LIE + + + +HLPVQ G+++IL+ M R YT E++ E+ ++ ++ P+
Sbjct: 331 HPRDFDDHLIEVLAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQKIKRAIPN 390
Query: 289 LNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVK 347
+ TD+IVGFP E DE F+ ++ L+R I D YSPR GT AAK K +P + +
Sbjct: 391 ASFTTDLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVPMEVKR 450
Query: 348 ERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK 383
ER L+ + IS + N +Y K VEVL+ GE KK
Sbjct: 451 ERLARLNALVNDISAQKNLEYQDKVVEVLVEGESKK 486
>sp|O31778|YMCB_BACSU HYPOTHETICAL 58.2 KDA PROTEIN IN KLB-COTE INTERGENIC REGION
>gi|7429888|pir||D69884 conserved hypothetical protein
ymcB - Bacillus subtilis >gi|2634073|emb|CAB13574.1|
(Z99112) similar to hypothetical proteins [Bacillus
subtilis]
Length = 509
Score = 197 bits (496), Expect = 2e-49
Identities = 131/396 (33%), Positives = 203/396 (51%), Gaps = 22/396 (5%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKI---AR 59
K YI YGC N D E+MA + G+E D+ ++++N+CA+++ E K+
Sbjct: 67 KFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELG 126
Query: 60 RIKELLDSGKKVI--VTGCLPHVNPDVIDER------VSGILGVKSIDRIIQAVEYALRG 111
+K L + +I V GC+ V++ V I G +I R+ + + A
Sbjct: 127 HLKALKKNNPDLILGVCGCMSQ-EESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLS 185
Query: 112 EKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEK 171
++++ V W K + P++ + V I GC CTYC + RG +S PE
Sbjct: 186 KEMV-VEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPED 244
Query: 172 IVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT---NLAKLLDEITAIEGEFRVRVGMMNP 228
I+ V+ +GYKEI L ++ YG D L L+DE+ I+ R+R
Sbjct: 245 IIQEVRRLASEGYKEITLLGQNVNAYGKDFEDMTYGLGDLMDELRKIDIP-RIR---FTT 300
Query: 229 NHVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFP 287
+H F D LIE + + +HLPVQSG +++L+ M R Y E + E+V++ ++ P
Sbjct: 301 SHPRDFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMP 360
Query: 288 DLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIV 346
+ +L TDIIVGFP E DE F+ ++ L R + D YSPR GT AAK K +P +
Sbjct: 361 NASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVK 420
Query: 347 KERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK 382
KER + L+ + +IS + ++Y GK VEVL+ GE K
Sbjct: 421 KERLQRLNALVNEISAKKMKEYEGKVVEVLVEGESK 456
>sp|O66772|Y474_AQUAE HYPOTHETICAL PROTEIN AQ_474 >gi|7429889|pir||H70342 conserved
hypothetical protein aq_474 - Aquifex aeolicus
>gi|2983129|gb|AAC06733.1| (AE000691) hypothetical
protein [Aquifex aeolicus]
Length = 410
Score = 193 bits (486), Expect = 3e-48
Identities = 136/410 (33%), Positives = 212/410 (51%), Gaps = 23/410 (5%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+K+ E GC N+ D +++ G+E+V D ++ V+N+C V +R + I
Sbjct: 1 MKVAFETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAI 60
Query: 62 KELLDSGKKVIV--TGCLPHVNPDVIDE--RVSGILGVKSIDRIIQAVE-YALRGEKLIS 116
+ K IV TGC VNP + + V ++G +++ +E Y R EK +
Sbjct: 61 YQAKRRNPKAIVVATGCYAQVNPQELAKLKEVDLVVGNTHKSELLKILEEYLERREKKVV 120
Query: 117 VPD-WRKRNLDKLDFPRLSPRTVYF-----IVPIAEGCLNACTYCATRFARGVLKSYSPE 170
V + +R++ + D +YF + + EGC CT+C +ARG ++S E
Sbjct: 121 VGEIFREKEVRNFD------TVLYFEGVRPFLKVQEGCNKFCTFCVIPYARGKVRSVDLE 174
Query: 171 KIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNH 230
KIV VK ++G+KE+ L+ YG+D G NL LL E+ IEG +R+ M+
Sbjct: 175 KIVHQVKLLAQKGFKEVVLTGTQLSQYGWDKGYNLYTLLTELIKIEGIELIRLSSMHIKE 234
Query: 231 VLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLN 290
+ K L +LI + +EKI HL +QSG N IL M R YT EE+EE+V + P +
Sbjct: 235 MDKELLKLIVS--EEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIVENRPISS 292
Query: 291 LHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKER 349
+ TD+IVGFP E +E FQ + E ++RI +++ YS RP T A+K K +LP I KER
Sbjct: 293 IGTDVIVGFPTESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLPERIKKER 352
Query: 350 SRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK---KGNVDAVTMNYKHV 396
R+L + + E +K GK++ L+ E + + +D YK V
Sbjct: 353 VRILKELDQKKRQEFYEKNKGKELRALVIEENRLLTENYIDIKREGYKEV 402
>gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum]
Length = 386
Score = 192 bits (482), Expect = 8e-48
Identities = 122/386 (31%), Positives = 208/386 (53%), Gaps = 16/386 (4%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+K+ GC N + E MA +G EIV + ++ + V+N+C V + +RK + I
Sbjct: 1 MKVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMI 60
Query: 62 KELLDSGKKVIVT--GCLPHVNPDVIDE--RVSGILGVKSIDRIIQAV-EYALRGEKLIS 116
+ K ++ GC V P+ + E V +LG K+ II V ++ ++++
Sbjct: 61 SRARKANKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVN 120
Query: 117 VPD-WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
V D + + + L+ +T F+ I +GC C+YC +ARG + S +PEK++G
Sbjct: 121 VKDVFTDKKFEDLNIDEYQDKTRAFL-KIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGE 179
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDI--GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLK 233
+K + G+KEI LS YG D+ NL ++++ I+G R+R+G + P +
Sbjct: 180 IKRLAEHGFKEIILSGIHIASYGDDLKGDWNLISIIEKAEQIDGIERIRIGSIEP----R 235
Query: 234 FLDE--LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
F DE + + +K+ HL +QSG + L RM R YT EE++EIV + R+ D+++
Sbjct: 236 FFDEDTISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSI 295
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERS 350
TD+IVGFPGE DE F+++ + ++ I K++V +YSPR GT AA K Q+ G + +RS
Sbjct: 296 TTDVIVGFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRS 355
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVL 376
L + + K++ ++++VL
Sbjct: 356 AELIELDKINEKKFMSKFLDREMDVL 381
>pir||E82261 conserved hypothetical protein VC0962 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655421|gb|AAF94124.1|
(AE004177) conserved hypothetical protein [Vibrio
cholerae]
Length = 474
Score = 185 bits (464), Expect = 1e-45
Identities = 137/447 (30%), Positives = 234/447 (51%), Gaps = 35/447 (7%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLA-GHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K+ I+ +GC N D MA LL+ A G+E+ P+E +++++N+C++++ + K+ ++
Sbjct: 4 KLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQL 63
Query: 62 ---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
K L D V+ V GC+ D I +R V I G +++ R+ + ++ + +
Sbjct: 64 GRWKTLKDKKPGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSDA 123
Query: 114 L---ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPE 170
IS P+ K D+L PR T + V I EGC CTYC + RG S +
Sbjct: 124 PVMDISFPEIEK--FDRLPEPRAEGPTAF--VSIMEGCSKYCTYCVVPYTRGEEVSRPMD 179
Query: 171 KIVGWVKWAIKQGYKEIWLSAEDTGCYG---FDIGT-NLAKLLDEITAIEGEFRVRVGMM 226
++ + +QG +E+ L ++ Y D G + A+LL + I+G R+R
Sbjct: 180 DVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIR---F 236
Query: 227 NPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKK 285
+H L+F D++I Y+D ++ FLHLPVQSG + IL M R +T E++ I+++ RK
Sbjct: 237 TTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKA 296
Query: 286 FPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGW 344
PD+ + +D IVGFPGE D+ FQ +++LIR + D +SPRPGT AA + L
Sbjct: 297 RPDIQISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEE 356
Query: 345 IVKERSRLLHRIRLQISYE---INQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFG 401
+ KER L+ ++ QI+ + ++ +G + +L+ G KK ++ + ++ F
Sbjct: 357 VKKER---LYELQQQINSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFE 413
Query: 402 NS----GEFRIAEIKNATSTYLLGEVM 424
S G+F +I + L GE++
Sbjct: 414 GSPDLIGQFVDVKIVDVFPNSLRGELL 440
>sp|O66638|Y284_AQUAE HYPOTHETICAL PROTEIN AQ_284 >gi|7429890|pir||B70326 conserved
hypothetical protein aq_284 - Aquifex aeolicus
>gi|2982992|gb|AAC06605.1| (AE000682) hypothetical
protein [Aquifex aeolicus]
Length = 440
Score = 182 bits (457), Expect = 7e-45
Identities = 121/407 (29%), Positives = 210/407 (50%), Gaps = 24/407 (5%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K +I+ +GC N D E + LL G+E + +E +++++N+C +++ ++K+ +
Sbjct: 4 KFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSHLG 63
Query: 63 ELLDSGKK-----VIVTGCLPH-------VNPDVIDERVSGILGVKSIDRIIQAVEYALR 110
E +K + V GCL VID S ++ ++ + + A
Sbjct: 64 EYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSF----NMHQLPELINQAQA 119
Query: 111 GEKLISVPDWRKRNLDKL-DFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
G K I++ D ++ DK+ ++P V I +GC CTYC RG +S +
Sbjct: 120 GYKAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRAL 179
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTNL--AKLLDEITAIEGEFRVRVGMMN 227
I+ VK + G +EI L ++ +G D + ++LL +++ I+G R+R
Sbjct: 180 HSILDEVKRLVDDGVREIHLLGQNVTAWGKDFEKPIPFSELLYQVSKIDGVERIR---FT 236
Query: 228 PNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKF 286
H D++IEA D ++ LHLP Q+G N IL M R YT EE+ E +++ ++K
Sbjct: 237 TGHPRDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKV 296
Query: 287 PDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWI 345
D+ + TD+IVGFP E +E F+ ++++++++R ++V ++SPRPGT AA+ + Q+P +
Sbjct: 297 KDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDV 356
Query: 346 VKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMN 392
ER R L ++ I EI +KY G EVL+ E + T N
Sbjct: 357 KTERMRRLLELQKSILSEIAKKYEGTVQEVLVEEEKNGELIGRTTTN 403
>sp|O33238|YR33_MYCTU HYPOTHETICAL 55.1 KDA PROTEIN RV2733C >gi|7429881|pir||D70506
hypothetical protein Rv2733c - Mycobacterium
tuberculosis (strain H37RV) >gi|2292967|emb|CAB10909.1|
(Z98209) hypothetical protein Rv2733c [Mycobacterium
tuberculosis]
Length = 512
Score = 182 bits (456), Expect = 9e-45
Identities = 130/402 (32%), Positives = 193/402 (47%), Gaps = 23/402 (5%)
Query: 6 IENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELL 65
+ YGC N D E +A LL AG+ D E ++VV N+CAV++ + ++ + L
Sbjct: 29 VRTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSHLA 88
Query: 66 DSGK-----KVIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEKLISV 117
+ ++ V GCL + D + R V + G +I + +E A R K+ V
Sbjct: 89 PRKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERA-RHNKVAQV 147
Query: 118 PDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
P V I+ GC N+CT+C RG SP I+ V+
Sbjct: 148 EIAEALQQFPSSLPSSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVR 207
Query: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTN--------LAKLLDEITAIEGEFRVRVGMMNPN 229
+ G E+ L ++ YG A+LL I+G RVR
Sbjct: 208 SLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGAFAELLRACGDIDGLERVR---FTSP 264
Query: 230 HVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPD 288
H +F D++IEA Q + LH+P+QSG + ILR M R+Y E + I++ R P
Sbjct: 265 HPAEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPH 324
Query: 289 LNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVK 347
+ TD+IVGFPGE +E F +++++RR R +YS RPGT AA+ QLP +V+
Sbjct: 325 AAITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQLPKAVVQ 384
Query: 348 ERSRLLHRIRLQISYEINQKYIGKKVEVLI-HGEGKKGNVDA 388
ER L ++ QIS E N+ +G+ VEVL+ GEG+K V A
Sbjct: 385 ERYERLIALQEQISLEANRALVGQAVEVLVATGEGRKDTVTA 426
>sp|P54462|YQEV_BACSU HYPOTHETICAL 51.7 KD PROTEIN IN DNAJ-RPSU INTEREGENIC REGION
>gi|7429887|pir||E69952 conserved hypothetical protein
yqeV - Bacillus subtilis >gi|1303812|dbj|BAA12468.1|
(D84432) YqeV [Bacillus subtilis]
>gi|1890061|dbj|BAA12080.1| (D83717) YqeV [Bacillus
subtilis] >gi|2634989|emb|CAB14485.1| (Z99117) similar
to hypothetical proteins [Bacillus subtilis]
Length = 451
Score = 179 bits (450), Expect = 5e-44
Identities = 129/436 (29%), Positives = 220/436 (49%), Gaps = 18/436 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M + GC N + E + L AG+E ++ V+N+C V + ++K +
Sbjct: 1 MATVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQV 60
Query: 61 IKELLDSGKK--VIVTGCLPHVNPDVIDE--RVSGILGVKSIDRIIQAVE-YALRGEKLI 115
I+ + + VTGC +P I V ++G + ++++ ++ Y + +
Sbjct: 61 IRRAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPIN 120
Query: 116 SVPDWRK-RNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
V + K R ++LD P + RT + I EGC N CT+C +ARG+L+S PE+++
Sbjct: 121 GVSNIMKARVYEELDVPAFTDRTRASL-KIQEGCNNFCTFCIIPWARGLLRSRDPEEVIK 179
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGT-NLAKLLDEI-TAIEGEFRVRVGMMNPNHVL 232
+ + GYKEI L+ TG YG D+ N AKLL E+ T +EG R+R+ + + +
Sbjct: 180 QAQQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRVEGVKRIRISSIEASQIT 239
Query: 233 KFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
DE+IE + +KI LH+P+QSG N +L+RM R YT+E F + + + +K P L +
Sbjct: 240 ---DEVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERS 350
+D+IVGFPGE +E F + I+ + +++V YS R GT AA+ + Q+ + ER
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVD----AVTMNYKHVILPFGNSGEF 406
L + Q++ E +Y + +E++ K+ + T NY V+
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 407 RIAEIKNATSTYLLGE 422
+I ++K + Y E
Sbjct: 417 KIVKVKILKAGYPYNE 432
>pir||T35107 hypothetical protein SC4H2.08 SC4H2.08 - Streptomyces coelicolor
>gi|2995295|emb|CAA18324.1| (AL022268) hypothetical
protein SC4H2.08 [Streptomyces coelicolor A3(2)]
Length = 505
Score = 177 bits (445), Expect = 2e-43
Identities = 125/394 (31%), Positives = 206/394 (51%), Gaps = 21/394 (5%)
Query: 6 IENYGCARNRADGEIMAALLHLAGHEIVYDPDEGE--IVVVNSCAVKDPTERKIARRIKE 63
+ YGC N D E ++ LL AG+ + +G+ +VV N+CAV++ + K+ +
Sbjct: 18 VRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNLGH 77
Query: 64 LLDS-----GKKVIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYA-LRGEKL 114
L G ++ V GCL + D I +R V + G +I ++ +E A ++ E
Sbjct: 78 LAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQ 137
Query: 115 ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
+ + + + L R S + V I+ GC N CT+C RG K P I+
Sbjct: 138 VEIAESLEAFPSTLPTRRESAYAAW--VSISVGCNNTCTFCIVPALRGKEKDRRPGDILA 195
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGTNLA--KLLDEITAIEGEFRVRVGMMNPNHVL 232
V+ + +G EI L ++ YG DIG A KLL I+G RVR +P
Sbjct: 196 EVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRACGNIDGLERVRFTSPHPRD-- 253
Query: 233 KFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
F D++I A + LH+P+QSG + +L+ M R+Y E + I+++ R P +
Sbjct: 254 -FTDDVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAI 312
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERS 350
TDIIVGFPGE +E F++++ ++R R + +YS RPGT AA+ + Q+P +V+ER
Sbjct: 313 TTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERY 372
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLI-HGEGKK 383
L ++ +IS++ N+K +G+ +E+++ GEG+K
Sbjct: 373 ERLVALQEEISWDENKKQVGRTLELMVAEGEGRK 406
>dbj|BAB05070.1| (AP001511) unknown conserved protein [Bacillus halodurans]
Length = 448
Score = 176 bits (442), Expect = 4e-43
Identities = 122/435 (28%), Positives = 226/435 (51%), Gaps = 17/435 (3%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M + + GC N + E + L G+E V ++ V+N+C V + ++K +
Sbjct: 1 MATVAFQTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQV 60
Query: 61 IKELLDSGKKVI--VTGCLPHVNPDVIDE--RVSGILGVKSIDRIIQAVE-YALRGEKLI 115
I+ + + VTGC +P + V ++G + ++++ +E Y + +
Sbjct: 61 IRRAIRKNPDAVICVTGCYAQTSPAEVMAIPGVDIVVGTQDRKKMLEYIEQYKKERQPIN 120
Query: 116 SVPDWRK-RNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
V + K R ++LD P + RT + I EGC N CT+C +ARG+++S P++++
Sbjct: 121 GVGNIMKSRVYEELDVPAFTDRTRASL-KIQEGCNNFCTFCIIPWARGLMRSRDPKEVIK 179
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGT-NLAKLLDEITAIEGEFRVRVGMMNPNHVLK 233
+ ++ GYKEI L+ TG YG D+ +LA+LL+++ + G R+R+ + + +
Sbjct: 180 QAEQLVQAGYKEIVLTGIHTGGYGEDLKDYSLARLLEDLEQVNGLKRIRISSIEASQLT- 238
Query: 234 FLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLH 292
DE+IE + K+ + LH+P+QSG + +L+RM R YT+ F E ++ R+ P L +
Sbjct: 239 --DEVIEVIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVT 296
Query: 293 TDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERSR 351
+D+IVGFPGE + FQ + + I + + +++V YS R GT AA+ + Q+ + ER
Sbjct: 297 SDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVH 356
Query: 352 LLHRIRLQISYEINQKYIGKKVEVLIHGEGKK----GNVDAVTMNYKHVILPFGNSGEFR 407
L ++ Q++ E ++ G+ +E++ K+ G T NY V +P + +
Sbjct: 357 RLIQLSDQLAKEYASQFEGEVLEMIPEERDKEEPNSGLYVGYTDNYLKVKIPATDEMIGK 416
Query: 408 IAEIKNATSTYLLGE 422
+ ++K + Y E
Sbjct: 417 LVKVKITKAGYPYNE 431
>sp|P57516|Y441_BUCAI HYPOTHETICAL PROTEIN BU441 >gi|10039105|dbj|BAB13139.1| (AP001119)
hypothetical protein [Buchnera sp. APS]
Length = 439
Score = 174 bits (437), Expect = 2e-42
Identities = 130/454 (28%), Positives = 224/454 (48%), Gaps = 47/454 (10%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAG-HEIVYDPDEGEIVVVNSCAVKDPTERKIAR 59
M IYI+ +GC N D ++ LL + + + +I+++N+C++++ + K+
Sbjct: 1 MKYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFH 60
Query: 60 RI---KELLDSGKKVIVT--GCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRG 111
++ K++ ++ KVI+ GC+ I +R V I G +++ R+ + ++
Sbjct: 61 QLGRWKKIKNNNPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMID----- 115
Query: 112 EKLISVPDWRKRNLDKLDFPRLSPRTVYFIVP----------IAEGCLNACTYCATRFAR 161
V RK ++D + FP+L + YF+ P I EGC C++C + R
Sbjct: 116 ----EVEKKRKLSID-ISFPKLE-KFKYFLAPKKKGYTADISIMEGCNKYCSFCVVPYTR 169
Query: 162 GVLKSYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTN----LAKLLDEITAIEG 217
G S + ++ + KQG KEI L ++ Y ++L+ + I+G
Sbjct: 170 GNEISRPCDDVLFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDG 229
Query: 218 EFRVRVGMMNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFE 276
R+R NP L+F D++IE Y+D K+ FLHLPVQSG N IL M R+YT E++
Sbjct: 230 IERIRFTTSNP---LEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYT 286
Query: 277 EIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAA 336
I+K+ PD+ + +D IVGFPGE + F++++E I+ I D YS RPGT A+
Sbjct: 287 SIIKKLTIARPDIQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPAS 346
Query: 337 KWKQLPGWIVKERSRLLHRIRLQISYEI---NQKYIGKKVEVLIHGEGKKGNVDAVTMNY 393
+KE+ R L+ ++ +I+ + ++K G VL+ G K +D
Sbjct: 347 NMND--DLDLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVEGVSDKNIMDLYGRTE 404
Query: 394 KHVILPFGNS----GEFRIAEIKNATSTYLLGEV 423
+ ++ F S G+F +IK + L GE+
Sbjct: 405 NNRVVTFQGSSKMIGQFVNVKIKKVHTHSLKGEL 438
>sp|P77645|YLEA_ECOLI HYPOTHETICAL 53.7 KD PROTEIN IN CUTE-GLNX INTERGENIC REGION
>gi|7429880|pir||C64801 yleA protein - Escherichia coli
>gi|1778580|gb|AAB40863.1| (U82598) HI0019 homolog
[Escherichia coli] >gi|1786882|gb|AAC73762.1| (AE000170)
orf, hypothetical protein [Escherichia coli K12]
Length = 474
Score = 173 bits (434), Expect = 4e-42
Identities = 129/445 (28%), Positives = 229/445 (50%), Gaps = 31/445 (6%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLA-GHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ +GC N D MA LL G+++ +E +++++N+C++++ + K+ ++
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQL 63
Query: 62 ---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
K L + +I V GC+ + I +R V I G +++ R+ + + ++RG++
Sbjct: 64 GRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN-SVRGDR 122
Query: 114 L----ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
IS P+ K D+L PR T + V I EGC CTYC + RG S
Sbjct: 123 SPVVDISFPEIEK--FDRLPEPRAEGPTAF--VSIMEGCNKYCTYCVVPYTRGEEVSRPS 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDTGCY---GFDIGT-NLAKLLDEITAIEGEFRVRVGM 225
+ I+ + QG +E+ L ++ + +D T + A LL + AI+G R+R
Sbjct: 179 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIR--- 235
Query: 226 MNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H ++F D++IE Y+D ++ FLHLPVQSG + IL MGR +T E++ I+++ R
Sbjct: 236 FTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPG 343
PD+ + +D IVGFPGE E F+++++LI + D +S RPGT AA +P
Sbjct: 296 ARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPE 355
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS 403
K+R +L Q + +++ +G +L+ G +K ++ + ++ F +
Sbjct: 356 EEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSIMELSGRTENNRVVNFEGT 415
Query: 404 ----GEFRIAEIKNATSTYLLGEVM 424
G+F EI + L G+V+
Sbjct: 416 PDMIGKFVDVEITDVYPNSLRGKVV 440
>sp|Q57163|YLEA_HAEIN HYPOTHETICAL PROTEIN HI0019 >gi|1074226|pir||D64140 conserved
hypothetical protein HI0019 - Haemophilus influenzae
>gi|1572963|gb|AAC21697.1| (U32687) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 474
Score = 172 bits (431), Expect = 8e-42
Identities = 128/449 (28%), Positives = 230/449 (50%), Gaps = 39/449 (8%)
Query: 3 KIYIENYGCARNRADGEIMA-ALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ +GC N D MA LL G E+ P+E +++++N+C++++ + K+ ++
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQL 63
Query: 62 ---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
KEL + ++ V GC+ + I R V I G +++ R+ + + +RG K
Sbjct: 64 GRWKELKKNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQ-IRGGK 122
Query: 114 L----ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
+S P+ K D+L PR T + V I EGC CT+C + RG S
Sbjct: 123 SSVVDVSFPEIEK--FDRLPEPRAEGPTAF--VSIMEGCNKYCTFCVVPYTRGEEVSRPV 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT----NLAKLLDEITAIEGEFRVRVGM 225
+ ++ + +QG +E+ L ++ Y + A+LL + +I+G R+R
Sbjct: 179 DDVLFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDRLR--- 235
Query: 226 MNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H ++F D++I+ Y+D ++ FLHLPVQ+G + +L M R +T E++ I+++ R
Sbjct: 236 FTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKLRA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGW 344
PD+ + +D IVGFPGE E F++++ LI ++ D YS RPGT AA +P
Sbjct: 296 VRPDIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAA---DMPDD 352
Query: 345 IVKERSR-----LLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILP 399
+ ++ + L RI Q + + +++ +G + VL+ G KK ++ + I+
Sbjct: 353 VTEDEKKQRLYVLQERINQQAA-QFSRRMLGTEQRVLVEGPSKKDIMELTGRTETNRIVN 411
Query: 400 FGNS----GEFRIAEIKNATSTYLLGEVM 424
F S G+F +I + + L GEV+
Sbjct: 412 FQGSPEMIGKFVDVKITDVYTNSLRGEVV 440
>gb|AAF68426.1|AF237940_1 (AF237940) conserved hypothetical protein [Pasteurella multocida]
Length = 474
Score = 171 bits (430), Expect = 1e-41
Identities = 132/449 (29%), Positives = 231/449 (51%), Gaps = 39/449 (8%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLA-GHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ +GC N D MA LL+ G E+ P+E +++++N+C++++ + K+ ++
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFHQL 63
Query: 62 ---KELLDS--GKKVIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
KEL G + V GC+ + I R V I G +++ R+ + + +RG K
Sbjct: 64 GRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQ-IRGGK 122
Query: 114 L----ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
+S P+ K D+L PR T + V I EGC C++C + RG S
Sbjct: 123 SSVVDVSFPEIEK--FDRLPEPRAEGPTAF--VSIMEGCNKYCSFCVVPYTRGEEVSRPV 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDTGCYG---FDIGT-NLAKLLDEITAIEGEFRVRVGM 225
+ ++ + +QG +E+ L ++ Y D G A+LL + AI+G R+R
Sbjct: 179 DDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDRLR--- 235
Query: 226 MNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H ++F D++I+ Y+D ++ FLHLPVQSG + +L M RN+T E++ I+++ R
Sbjct: 236 FTTSHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKLRA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGW 344
P++ + +D IVGFPGE E F++++ LI ++ D YS RPGT AA +P
Sbjct: 296 VRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAA---DMPDD 352
Query: 345 IVKERSR-----LLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILP 399
+ +E + L RI Q + + ++ +G + VL+ G KK ++ + I+
Sbjct: 353 VTEEEKKQRLYVLQQRINNQAA-QFSRAMLGTEQRVLVEGPSKKDLMELTGRTETNRIVN 411
Query: 400 FGNS----GEFRIAEIKNATSTYLLGEVM 424
F + G+F +I + + L GEV+
Sbjct: 412 FVGTPDMIGKFVDIKITDVFTNSLRGEVV 440
>emb|CAB62263.1| (AJ249116) MiaB protein [Salmonella typhimurium]
Length = 474
Score = 170 bits (426), Expect = 3e-41
Identities = 126/445 (28%), Positives = 228/445 (50%), Gaps = 31/445 (6%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLA-GHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ +GC N D MA LL G+++ +E +++++N+C++++ + K+ ++
Sbjct: 4 KLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQL 63
Query: 62 ---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
+ L + +I V GC+ + I +R V I G +++ R+ + + ++RG++
Sbjct: 64 GRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN-SVRGDR 122
Query: 114 L----ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
IS P+ K D+L PR T + V I EGC CTYC + RG S
Sbjct: 123 SPVVDISFPEIEK--FDRLPEPRAEGPTAF--VSIMEGCNKYCTYCVVPYTRGEEVSRPS 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDTGCY---GFDIGTN-LAKLLDEITAIEGEFRVRVGM 225
+ I+ + QG +E+ L ++ + +D T A LL + AI+G R+R
Sbjct: 179 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTFADLLRLVAAIDGIDRIR--- 235
Query: 226 MNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H ++F D++IE Y+D ++ FLHLPVQSG + +L MGR +T E++ I+++ R
Sbjct: 236 FTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPG 343
PD+ + +D IVGFPGE + F+++++LI + D +S RPGT AA +P
Sbjct: 296 ARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPE 355
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS 403
K+R +L Q + +++ +G +L+ G +K ++ + ++ F +
Sbjct: 356 EEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKNIMELSGRTENNRVVNFEGT 415
Query: 404 ----GEFRIAEIKNATSTYLLGEVM 424
G+F EI + L G+V+
Sbjct: 416 PEMIGKFVDVEITDVYPNSLRGKVV 440
>pir||F83147 conserved hypothetical protein PA3980 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950171|gb|AAG07367.1|AE004816_3 (AE004816)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 446
Score = 169 bits (425), Expect = 4e-41
Identities = 130/446 (29%), Positives = 228/446 (50%), Gaps = 32/446 (7%)
Query: 3 KIYIENYGCARNRADGEIMAALL--HLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
K++IE +GC N D MA LL H A E+ + E +++++N+C++++ + K+ +
Sbjct: 4 KLFIETHGCQMNEYDSSRMADLLGEHQA-LEVTENAAEADVILLNTCSIREKAQEKVFSK 62
Query: 61 I---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGE 112
+ +EL ++ V GC+ I ER V + G +++ R+ + ++ A
Sbjct: 63 LGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTR 122
Query: 113 KL---ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
K +S P+ K D+L PR+ T + V + EGC C++C + RG S
Sbjct: 123 KPQVDVSFPEIEK--FDRLPEPRVDGPTAF--VSVMEGCSKYCSFCVVPYTRGEEVSRPF 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDT-GCYGFDIGTNLA---KLLDEITAIEGEFRVRVGM 225
+ ++ V + G +E+ L ++ G G LA +LL + A++G R+R
Sbjct: 179 DDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRY-- 236
Query: 226 MNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H L+F D LI+A+ + ++ KF+HLPVQSG + +L M RN+TV E++ +++ +
Sbjct: 237 -TTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPG 343
PD+ + +D IVGFPGE ++ F+++++L+ + D YS RPGT AA LP
Sbjct: 296 AVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPE 355
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK--GNVDAVTMNYKHVILPFG 401
+ K+R ++L Q YEI+++ +G +L+ KK G + T N + V
Sbjct: 356 EVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFRCD 415
Query: 402 NS---GEFRIAEIKNATSTYLLGEVM 424
N G+F I +A L G ++
Sbjct: 416 NPRLIGQFAQVHIDDALPHSLRGTLI 441
>sp|Q51470|YHE2_PSEAE HYPOTHETICAL 50.0 KD PROTEIN IN HEML 3'REGION (ORF2)
>gi|1363389|pir||S57900 conserved hypothetical protein 2
(hemL 3' region) - Pseudomonas aeruginosa
>gi|557263|emb|CAA57577.1| (X82072) orf2 [Pseudomonas
aeruginosa]
Length = 446
Score = 169 bits (423), Expect = 7e-41
Identities = 129/446 (28%), Positives = 228/446 (50%), Gaps = 32/446 (7%)
Query: 3 KIYIENYGCARNRADGEIMAALL--HLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
K++IE +GC N D MA LL H A E+ + E +++++N+C++++ + K+ +
Sbjct: 4 KLFIETHGCQMNEYDSSRMADLLGEHQA-LEVTENAAEADVILLNTCSIREKVQEKVCSK 62
Query: 61 I---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGE 112
+ +EL ++ V GC+ I ER V + G +++ R+ + ++ A
Sbjct: 63 LGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTR 122
Query: 113 KL---ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSP 169
K +S P+ K D+L PR+ T + V + EGC C++C + RG S
Sbjct: 123 KPQVDVSFPEIEK--FDRLPEPRVDGPTAF--VSVMEGCSKYCSFCVVPYTRGEEVSRPF 178
Query: 170 EKIVGWVKWAIKQGYKEIWLSAEDT-GCYGFDIGTNLA---KLLDEITAIEGEFRVRVGM 225
+ ++ V + G +E+ L ++ G G LA +LL + A++G R+R
Sbjct: 179 DDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRY-- 236
Query: 226 MNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H L+F D LI+A+ + ++ KF+HLPVQSG + +L M RN+TV E++ +++ +
Sbjct: 237 -TTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKA 295
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPG 343
PD+ + +D IVGFPGE ++ F+++++L+ + D YS RPGT AA LP
Sbjct: 296 AVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPE 355
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK--GNVDAVTMNYKHVILPFG 401
+ K+R ++L Q YEI+++ +G +L+ K+ G + T N + V
Sbjct: 356 EVKKQRLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKEDPGMLQGRTENNRIVNFRCD 415
Query: 402 NS---GEFRIAEIKNATSTYLLGEVM 424
N G+F I +A L G ++
Sbjct: 416 NPRLIGQFAQVHIDDALPHSLRGTLI 441
>pir||G72101 conserved hypothetical protein - Chlamydophila pneumoniae (strain
CWL029) >gi|4376526|gb|AAD18404.1| (AE001610) conserved
hypothetical protein [Chlamydophila pneumoniae CWL029]
Length = 500
Score = 168 bits (422), Expect = 9e-41
Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 19/387 (4%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI+ + GC+RN D E+M +L AG+E + ++ + +++N+CA + +
Sbjct: 49 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 108
Query: 63 ELLDSGK---KVIVTGCLPHVNPDVIDERVSGI---LGVKSIDRIIQAVEYALRGEKLIS 116
L+D K K+IVTGC+ + D + +S I LG ++ I+ A+E GEK+ +
Sbjct: 109 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 168
Query: 117 VPDWRKRNLDKLDFPR-LSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
K ++ + PR LS Y + +AEGC C +C +G L+S ++I+
Sbjct: 169 -----KSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 223
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTN----LAKLLDEITAIEGEFRVRVGMMNPNHV 231
+ + + KEI L A+D G YG D+ T+ L LL E+ G++ +R+ + P+ V
Sbjct: 224 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 283
Query: 232 LKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
+ +L+++ + K+ ++ +P+Q ++ IL++M R + E+ +++ R K P + +
Sbjct: 284 SDGIIDLMQS--NPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYI 341
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERS 350
+ +IVGFPGE E FQ + I D + + YS T AA+ Q+P + + R
Sbjct: 342 RSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRL 401
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLI 377
++L +I+ + + NQK IG+K+E +I
Sbjct: 402 KILSQIQKRNVDKHNQKLIGEKIEAVI 428
>pir||A81571 conserved hypothetical protein CP0510 [imported] - Chlamydophila
pneumoniae (strain AR39) >gi|7189427|gb|AAF38338.1|
(AE002211) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
Length = 503
Score = 168 bits (422), Expect = 9e-41
Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 19/387 (4%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI+ + GC+RN D E+M +L AG+E + ++ + +++N+CA + +
Sbjct: 52 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 111
Query: 63 ELLDSGK---KVIVTGCLPHVNPDVIDERVSGI---LGVKSIDRIIQAVEYALRGEKLIS 116
L+D K K+IVTGC+ + D + +S I LG ++ I+ A+E GEK+ +
Sbjct: 112 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 171
Query: 117 VPDWRKRNLDKLDFPR-LSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
K ++ + PR LS Y + +AEGC C +C +G L+S ++I+
Sbjct: 172 -----KSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 226
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTN----LAKLLDEITAIEGEFRVRVGMMNPNHV 231
+ + + KEI L A+D G YG D+ T+ L LL E+ G++ +R+ + P+ V
Sbjct: 227 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 286
Query: 232 LKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
+ +L+++ + K+ ++ +P+Q ++ IL++M R + E+ +++ R K P + +
Sbjct: 287 SDGIIDLMQS--NPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYI 344
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERS 350
+ +IVGFPGE E FQ + I D + + YS T AA+ Q+P + + R
Sbjct: 345 RSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRL 404
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLI 377
++L +I+ + + NQK IG+K+E +I
Sbjct: 405 KILSQIQKRNVDKHNQKLIGEKIEAVI 431
>dbj|BAA98461.1| (AP002545) conserved hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 500
Score = 168 bits (422), Expect = 9e-41
Identities = 113/387 (29%), Positives = 205/387 (52%), Gaps = 19/387 (4%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI+ + GC+RN D E+M +L AG+E + ++ + +++N+CA + +
Sbjct: 49 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 108
Query: 63 ELLDSGK---KVIVTGCLPHVNPDVIDERVSGI---LGVKSIDRIIQAVEYALRGEKLIS 116
L+D K K+IVTGC+ + D + +S I LG ++ I+ A+E GEK+ +
Sbjct: 109 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 168
Query: 117 VPDWRKRNLDKLDFPR-LSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
K ++ + PR LS Y + +AEGC C +C +G L+S ++I+
Sbjct: 169 -----KSYIEMGEVPRQLSTPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKE 223
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTN----LAKLLDEITAIEGEFRVRVGMMNPNHV 231
+ + + KEI L A+D G YG D+ T+ L LL E+ G++ +R+ + P+ V
Sbjct: 224 FRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRMLYLYPDEV 283
Query: 232 LKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
+ +L+++ + K+ ++ +P+Q ++ IL++M R + E+ +++ R K P + +
Sbjct: 284 SDGIIDLMQS--NPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAKVPQVYI 341
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERS 350
+ +IVGFPGE E FQ + I D + + YS T AA+ Q+P + + R
Sbjct: 342 RSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRL 401
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLI 377
++L +I+ + + NQK IG+K+E +I
Sbjct: 402 KILSQIQKRNVDKHNQKLIGEKIEAVI 428
>pir||F82747 conserved hypothetical protein XF0906 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105825|gb|AAF83716.1|AE003930_6 (AE003930)
conserved hypothetical protein [Xylella fastidiosa]
Length = 497
Score = 168 bits (421), Expect = 1e-40
Identities = 139/454 (30%), Positives = 221/454 (48%), Gaps = 41/454 (9%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLA-GHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ +GC N D MA +L E+ +P+E +I+++N+C++++ + K+ ++
Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108
Query: 62 ---KELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRI---IQAVEYALR 110
+ L SG+ VI V GC+ + I +R V + G +++ R+ I+A R
Sbjct: 109 GRWRALKTSGRDVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPDMIRARREQNR 168
Query: 111 GEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPE 170
+ I P+ K D L PR + + V I EGC C++C + RG S E
Sbjct: 169 PQVDIRFPEIEK--FDHLPTPRAEGPSAF--VSIMEGCSKYCSFCVVPYTRGEEVSRPFE 224
Query: 171 KIVGWVKWAIKQGYKEIWLSAEDTGCY------GFDIGTN--------LAKLLDEITAIE 216
++ + QG +EI L ++ Y G TN L L+ I E
Sbjct: 225 DVLTEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRAIAQFE 284
Query: 217 GEFRVRVGMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEF 275
R+R +H L+F D L+EAY+D ++ LHLPVQSG + IL M R YT EF
Sbjct: 285 SIGRIR---FTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTALEF 341
Query: 276 EEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIA 335
+ +++ R PD+++ +D I+GFPGE D FQ++++LI I D+ YS RPGT A
Sbjct: 342 KSKIRKLRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPA 401
Query: 336 AKWK-QLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK--GNVDAVTMN 392
+ + P I + R L + + +I+++ IG VL+ G KK + T N
Sbjct: 402 SNLEDHTPDEIKRTRLEHLQKHINTYAADISKRMIGTVQTVLVEGPSKKNPNELTGKTEN 461
Query: 393 YKHVILPFGNS---GEFRIAEIKNATSTYLLGEV 423
+ V P G+ G+F I A S L G V
Sbjct: 462 MRPVNFP-GHPRLIGQFIDVHITEALSNSLRGRV 494
>sp|O67016|Y849_AQUAE HYPOTHETICAL PROTEIN AQ_849 >gi|7429891|pir||E70373 conserved
hypothetical protein aq_849 - Aquifex aeolicus
>gi|2983397|gb|AAC06982.1| (AE000710) hypothetical
protein [Aquifex aeolicus]
Length = 432
Score = 166 bits (417), Expect = 3e-40
Identities = 118/384 (30%), Positives = 197/384 (50%), Gaps = 24/384 (6%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+KI + + GCA+N D EI+ L AG E+ +P+E ++++VN+C +P + + I
Sbjct: 1 MKIGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETI 60
Query: 62 KELLDSGKKVIVTGCLPHVNPDVIDE---RVSGILGVKSIDRIIQAVEYALRGEKLISVP 118
E +SGK+VIV GCL + +++ V G +S + I+ + L+ +K I
Sbjct: 61 LEFAESGKEVIVMGCLVERYKEELEKEIPEVKAYFGTESWNEILNYL--GLKEKKEI--- 115
Query: 119 DWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKW 178
KR L +PR+ Y + IAEGC C++CA RG +S E+IV K+
Sbjct: 116 ---KRILS-------TPRS-YAYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKF 164
Query: 179 AIKQGYKEIWLSAEDTGCYGFDI--GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLD 236
QG KEI + ++DT YG D+ L +LL+ + +EG +R+ + P V + L
Sbjct: 165 LADQGVKEICVVSQDTTYYGKDLYKEYKLVELLEGLEKVEGIKWIRLLYLYPTEVHEDLI 224
Query: 237 ELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
+ + EK+ + +P+Q + +L+ M R Y + +++ RKK + T I
Sbjct: 225 DYVA--NSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKKIENAVFRTTFI 282
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIA-AKWKQLPGWIVKERSRLLHR 355
VGFP E +E F+ + + + V YSP GT A +P + +ER L
Sbjct: 283 VGFPTESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPREVKEERREELMA 342
Query: 356 IRLQISYEINQKYIGKKVEVLIHG 379
I+ I+ + N++++GK++EVLI G
Sbjct: 343 IQRGITRKKNEEFLGKEIEVLIDG 366
>sp|Q9ZCE8|Y808_RICPR HYPOTHETICAL PROTEIN RP808 >gi|7445345|pir||B71642 hypothetical
protein RP808 - Rickettsia prowazekii
>gi|3861335|emb|CAA15234.1| (AJ235273) unknown
[Rickettsia prowazekii]
Length = 445
Score = 166 bits (416), Expect = 5e-40
Identities = 120/400 (30%), Positives = 196/400 (49%), Gaps = 24/400 (6%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIAR--- 59
K+YI+ YGC N D + LL+ G+E D E +I+++N+C +++ K
Sbjct: 4 KLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKAAEKTYSELG 63
Query: 60 RIKELLDSGKK-------VIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYAL 109
RIK+L ++ K+ ++V GC+ + I R V ++G +S + + + +
Sbjct: 64 RIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELISKVV 123
Query: 110 RGEK-LISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYS 168
R EK LI + + D L +L P+ + + EGC CT+C + RG S S
Sbjct: 124 RHEKQLIDLDFVEEAKFDNLP-EQLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFSRS 182
Query: 169 PEKIVGWVKWAIKQGYKEIWLSAEDTGCYGF----DIGTNLAKLLDEITAIEGEFRVRVG 224
E++ A+ KEI L ++ Y D LA LL + I R+R
Sbjct: 183 VEQVYRESLKAVSNDAKEIILLGQNVNAYHGKGPKDKIFTLADLLKCLAQIPNLARLRY- 241
Query: 225 MMNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFR 283
+H + D+LI+ + E K+ FLHLPVQSG N IL+ M R + + + I+ R
Sbjct: 242 --MTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNRKHDRDYYFNIINRLR 299
Query: 284 KKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAA-KWKQLP 342
+ D+ L +D IVGFPGE ++ F+ +++L+ R++ + +YSPRPGT A + Q+P
Sbjct: 300 EARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTDQIP 359
Query: 343 GWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGK 382
I +R +L + NQ +G + VL +GK
Sbjct: 360 EHIKSKRLTILQQELATQQLAFNQSCVGSTMRVLFDRDGK 399
>sp|P56131|Y269_HELPY HYPOTHETICAL PROTEIN HP0269 >gi|7429884|pir||E64553 conserved
hypothetical ATP-binding protein HP0269 - Helicobacter
pylori (strain 26695) >gi|2313364|gb|AAD07337.1|
(AE000546) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
Length = 437
Score = 164 bits (412), Expect = 1e-39
Identities = 114/397 (28%), Positives = 198/397 (49%), Gaps = 21/397 (5%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+K+YIE GCA N D E + + L ++ DP +++++N+C+V++ ERK+ I
Sbjct: 1 MKVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEI 60
Query: 62 KELLDSGK---KVIVTGCLP-HVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLI 115
+ K K+ V GC H+ D++ + VS +LG +++ +I Q + EK +
Sbjct: 61 GQFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHK----EKAV 116
Query: 116 SVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
V + +F + + ++ I+ GC C YC RG S + I+
Sbjct: 117 EVAIDYDESAYAFEFFEKKAQ-IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKE 175
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAK-----LLDEITAIEGEFRVRVGMMNPNH 230
+ G KE+ L ++ YG + AK LLD+++ I+G R+R +P H
Sbjct: 176 AEKLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLH 235
Query: 231 VLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDL 289
+ D +E + ++ K+ K +H+P+QSG + +L+ M R Y+ E F V+ + P++
Sbjct: 236 MN---DGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEV 292
Query: 290 NLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQ-LPGWIVKE 348
+ TDIIVGFP E D+ F+ ++E++ ++R D + YSPRP T A WK+ +P +
Sbjct: 293 GISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSS 352
Query: 349 RSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGN 385
R L +I E + +GK VL+ + N
Sbjct: 353 RLERLQNRHKEILEEKAKLEVGKTHVVLVENRREMDN 389
>sp|Q9ZMG6|Y269_HELPJ HYPOTHETICAL PROTEIN HP0269/JHP0254 >gi|7445343|pir||E71953
hypothetical protein jhp0254 - Helicobacter pylori
(strain J99) >gi|4154788|gb|AAD05846.1| (AE001463)
putative [Helicobacter pylori J99]
Length = 437
Score = 164 bits (412), Expect = 1e-39
Identities = 115/389 (29%), Positives = 196/389 (49%), Gaps = 21/389 (5%)
Query: 2 VKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+K+YIE GCA N D E + + L ++ DP +++++N+C+V++ ERK+ I
Sbjct: 1 MKVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEI 60
Query: 62 KELLDSGK---KVIVTGCLP-HVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLI 115
+ K K+ V GC H+ D++ + VS +LG +++ +I Q + EK +
Sbjct: 61 GQFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHK----EKAV 116
Query: 116 SVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
V + +F + + ++ I+ GC C YC RG S + I+
Sbjct: 117 EVAIDYDESAYAFEFFEKKAQ-IRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKE 175
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAK-----LLDEITAIEGEFRVRVGMMNPNH 230
+ G KE+ L ++ YG + AK LLD+++ I+G R+R +P H
Sbjct: 176 AEKLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLH 235
Query: 231 VLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDL 289
+ D +E + Q+ K+ K +H+P+QSG + +L+ M R Y+ E F V+ + P++
Sbjct: 236 MN---DAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEV 292
Query: 290 NLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQ-LPGWIVKE 348
+ TDIIVGFP E D+ F+ ++E++ ++R D + YSPRP T A WK+ +P I
Sbjct: 293 GISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEISSL 352
Query: 349 RSRLLHRIRLQISYEINQKYIGKKVEVLI 377
R L +I E + +GK VL+
Sbjct: 353 RLERLQNRHKEILEEKAKLEVGKTHVVLV 381
>sp|Q49842|YR33_MYCLE HYPOTHETICAL 56.0 KDA PROTEIN B2235_C2_195 >gi|2145787|pir||S72937
hypothetical protein B2235_C2_195 - Mycobacterium leprae
>gi|467090|gb|AAA17273.1| (U00019) B2235_C2_195
[Mycobacterium leprae]
Length = 516
Score = 162 bits (407), Expect = 5e-39
Identities = 120/400 (30%), Positives = 193/400 (48%), Gaps = 26/400 (6%)
Query: 6 IENYGCARNRADGEIMAALLHLAGHEIVYDP---DEGEIVVVNSCAVKDPTERKIARRIK 62
+ YGC N D E +A LL AG++ D + ++VV N+CAV++ + ++ +
Sbjct: 21 VRTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGNLS 80
Query: 63 ELLDSGK-----KVIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEKL 114
L + ++ V GCL + + + V + G ++ + ++ A R K+
Sbjct: 81 HLAPRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRA-RHNKV 139
Query: 115 ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
V P V I+ GC N+CT+C RG SP I+
Sbjct: 140 AQVEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILA 199
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGT--------NLAKLLDEITAIEGEFRVRVGMM 226
V+ + G E+ L ++ YG + A+LL +I+G RVR
Sbjct: 200 EVEALVADGVLEVTLLGQNVNAYGVSFADPALARNRGSFAELLRSCGSIDGLERVR---F 256
Query: 227 NPNHVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKK 285
H +F ++IEA Q + LH+P+QSG + +LR M R+Y VE + I+ + R
Sbjct: 257 TSPHPAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAA 316
Query: 286 FPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAK-WKQLPGW 344
P + TD+IVGFPGE +E F +++++R++R +YS RPGT AA+ QLP
Sbjct: 317 MPHAAITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRPGTPAAELGGQLPKA 376
Query: 345 IVKERSRLLHRIRLQISYEINQKYIGKKVEVLI-HGEGKK 383
+V+ER L ++ QI E N+ IG+ VE+L+ GEG+K
Sbjct: 377 VVQERYERLVELQEQICMEENRVLIGRIVELLVTTGEGRK 416
>sp|Q49573|Y16R_MYCIO HYPOTHETICAL 51.3 KD PROTEIN IN 16S RNA 5'REGION
Length = 438
Score = 161 bits (402), Expect = 2e-38
Identities = 117/431 (27%), Positives = 213/431 (49%), Gaps = 17/431 (3%)
Query: 6 IENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELL 65
I GC N + + L + G V + ++ ++N+C V + + K IK
Sbjct: 12 IHTLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKRAH 71
Query: 66 DSGKK--VIVTGCLPHVNPDVIDE-RVSGILGVKSIDRIIQAV-EYALRGEKLISVPDW- 120
K +IV GC+ VN D++D+ ++S +G K + + + EY + E++ V +
Sbjct: 72 VQNKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRERIYRVENIL 131
Query: 121 --RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKW 178
+K DF L + + I +GC C+YC F+RG +S E I+ +K
Sbjct: 132 AEKKFEQTTQDFIFLENTRAF--IKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKT 189
Query: 179 AIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDEL 238
+ + +KEI L+ +T Y + LL+ I ++G+FRVR+ + P + DE+
Sbjct: 190 LVSKXFKEIVLTGVNTAGYLDENNNTFFDLLNNINKLDGDFRVRISSLEP---FQINDEI 246
Query: 239 IEAYQDEK--IYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
I+ K + H+ +QSG +D+L++M R YT +EF +++++ K P N TD I
Sbjct: 247 IDLVTSNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYI 306
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRI 356
VGFP E DE ++S++ + +I+ +++ YS R T ++ +K + K+R + + ++
Sbjct: 307 VGFPTETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKDINDSTKKDRVKEITKL 366
Query: 357 RLQISYEINQKYIGKKVEVLIHGEGKKGNV-DAVTMNYKHVILPFGNSGEFRI--AEIKN 413
E +KYIGK EVL + + + + Y V++ G++ E ++ IK
Sbjct: 367 NYLNKKENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESGDNLENKMLKVRIKK 426
Query: 414 ATSTYLLGEVM 424
L+GE++
Sbjct: 427 IFFDSLVGEII 437
>pir||C81034 conserved hypothetical protein NMB1866 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227123|gb|AAF42200.1| (AE002536) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 442
Score = 160 bits (401), Expect = 3e-38
Identities = 127/405 (31%), Positives = 201/405 (49%), Gaps = 32/405 (7%)
Query: 1 MVKIYIENYGCARNRADGEIMAALL--HLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIA 58
M K++I +GC N D + M A+L G E V DE +I++ N+C+V++ + K+
Sbjct: 1 MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVF 60
Query: 59 R---RIKELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAV---EY 107
R++ L + +I V GC+ + I +R V + G +++ R+ + + E
Sbjct: 61 SDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKET 120
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ + IS P+ K D L R+ + V I EGC C++C + RG S
Sbjct: 121 SGLSQVDISFPEIEK--FDHLPPARVEGGAAF--VSIMEGCSKYCSFCVVPYTRGEEFSR 176
Query: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT----NLAKLLDEITAIEGEFRVRV 223
++ + +QG KEI L ++ Y ++ + A LL + I G R+R
Sbjct: 177 PLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMR- 235
Query: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEF 282
+H +F D +IE Y+D K+ LHLP+QSG + +L M R YT E++ I+++
Sbjct: 236 --FTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKL 293
Query: 283 RKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLP 342
R PDL L +D IVGFPGE + F+++++L++ I D V YSPRPGT AA LP
Sbjct: 294 RAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAA---NLP 350
Query: 343 GWIV-KERSRLLHRIRLQISYE---INQKYIGKKVEVLIHGEGKK 383
+E+ R L + I E INQ +G L+ G KK
Sbjct: 351 DDTPHEEKVRRLEALNEVIEAETARINQTMVGTVQRCLVEGISKK 395
>pir||E81390 hypothetical protein Cj0458c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967929|emb|CAB75096.1|
(AL139075) hypothetical protein Cj0458c [Campylobacter
jejuni]
Length = 433
Score = 160 bits (400), Expect = 3e-38
Identities = 129/440 (29%), Positives = 220/440 (49%), Gaps = 29/440 (6%)
Query: 3 KIYIENYGCARNRADGEIMAA-LLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
K++I+ GCA N D E M A L + + D E +++++N+C+V++ K+ +
Sbjct: 5 KLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEV 64
Query: 62 ---KELLDSGKKVIVTGCLP-HVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLI 115
+++ G K+ V GC H+ ++ V +LG ++I +I QA+ + K +
Sbjct: 65 GGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAI----KTPKFM 120
Query: 116 SVP-DWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
V D+ + DF R S Y + I GC CTYC RG S I
Sbjct: 121 GVDIDYDESEFAFADF-RNSIYKSYINISI--GCDKHCTYCIVPHTRGDEISIPFNIIYK 177
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAK-----LLDEITAIEGEFRVRVGMMNPN 229
+ AI++G KEI+L ++ YG K LL+E++ IEG R+R +P
Sbjct: 178 EAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPL 237
Query: 230 HVLKFLDELIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPD 288
H+ D+ +E + + K+ K +H+P+QSG ++IL+ M R YT E + + R+ P+
Sbjct: 238 HMD---DKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPN 294
Query: 289 LNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVK 347
+++ TDIIV FPGE ++ F+ +V+++ ++R +++ +YS RP T AA Q+ I
Sbjct: 295 VSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEEIAS 354
Query: 348 ERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS---G 404
R L +I +I +K K +VL E + GN A + ++ G+ G
Sbjct: 355 RRLSTLQNRHSEILDKIVKKQENKTFKVLFE-ELRAGNSIAGRTDNNFLVQVEGSEELLG 413
Query: 405 EFRIAEIKNATSTYLLGEVM 424
+F+ +I NA L GE++
Sbjct: 414 QFKEVKITNAKRMVLYGEIV 433
>pir||C81978 hypothetical protein NMA0590 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379326|emb|CAB83881.1|
(AL162753) hypothetical protein NMA0590 [Neisseria
meningitidis Z2491]
Length = 442
Score = 159 bits (399), Expect = 4e-38
Identities = 124/402 (30%), Positives = 197/402 (48%), Gaps = 26/402 (6%)
Query: 1 MVKIYIENYGCARNRADGEIMAALL--HLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIA 58
M K++I +GC N D + M A+L G E V DE +I++ N+C+V++ + K+
Sbjct: 1 MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVF 60
Query: 59 R---RIKELLDSGKKVI--VTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAV---EY 107
R++ L + +I V GC+ + I +R V + G +++ R+ + + E
Sbjct: 61 SDLGRVRPLKEKKPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKET 120
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ + IS P+ K D L R+ + V I EGC C++C + RG S
Sbjct: 121 SGLSQVDISFPEIEK--FDHLPPARVEGGAAF--VSIMEGCSKYCSFCVVPYTRGEEFSR 176
Query: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT----NLAKLLDEITAIEGEFRVRV 223
++ + +QG KEI L ++ Y ++ + A LL + I G R+R
Sbjct: 177 PLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMR- 235
Query: 224 GMMNPNHVLKFLDELIEAYQD-EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEF 282
+H +F D +IE Y+D K+ LHLP+QSG + +L M R YT E++ I+++
Sbjct: 236 --FTTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKL 293
Query: 283 RKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAK-WKQL 341
R PDL L +D IVGFPGE + F+++++L++ I D V YSPRPGT AA
Sbjct: 294 RAIRPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDT 353
Query: 342 PGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK 383
P R L+ + + INQ IG L+ G KK
Sbjct: 354 PHEEKVRRLEALNEVIEAETARINQTMIGTVQRCLVEGISKK 395
>sp|P75802|YLIG_ECOLI HYPOTHETICAL 49.6 KDA PROTEIN IN MOEA-DACC INTERGENIC REGION
>gi|7429886|pir||C64821 conserved hypothetical protein
b0835 - Escherichia coli >gi|1787057|gb|AAC73922.1|
(AE000185) orf, hypothetical protein [Escherichia coli
K12] >gi|4062412|dbj|BAA35530.1| (D90721) Hypothetical
51.7 kd protein in dnaJ-rpsU interegenic region.
[Escherichia coli] >gi|4062420|dbj|BAA35538.1| (D90722)
Hypothetical 51.7 kd protein in dnaJ-rpsU interegenic
region. [Escherichia coli]
Length = 441
Score = 156 bits (390), Expect = 5e-37
Identities = 114/403 (28%), Positives = 200/403 (49%), Gaps = 34/403 (8%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI + GC +N D E + L G+++V D+ ++V+VN+C D ++ I
Sbjct: 9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIG 68
Query: 63 ELLDSGKKVIVTGCLPHVNPDV--IDERVSGILGVKSIDRIIQAVEYALRGEK----LIS 116
E L+ KVIVTGCL + + +V I G S +++++ V + + K L
Sbjct: 69 EALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVHHYVPKPKHNPFLSL 128
Query: 117 VPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWV 176
VP+ +L+PR Y + I+EGC + CT+C RG L S +++
Sbjct: 129 VPE---------QGVKLTPRH-YAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEA 178
Query: 177 KWAIKQGYKEIWLSAEDTGCYGFDIG------------TNLAKLLDEITAIEGEFRVRVG 224
K + G KEI + ++DT YG D+ T++ L ++++ + R+
Sbjct: 179 KRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHYV 238
Query: 225 MMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
P+ +D++I + KI +L +P+Q IL+ M R +V+ +K++R+
Sbjct: 239 YPYPH-----VDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWRE 293
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIA-AKWKQLPG 343
P+L L + IVGFPGE +E FQ ++ ++ R D+V +YSP G A A Q+P
Sbjct: 294 ICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPE 353
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNV 386
+ +ER +++ QIS E Q+ +G+++ V+I ++G +
Sbjct: 354 EVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEGAI 396
>pir||H75431 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458887|gb|AAF10722.1|AE001964_6 (AE001964)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 505
Score = 153 bits (383), Expect = 3e-36
Identities = 130/446 (29%), Positives = 210/446 (46%), Gaps = 35/446 (7%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
++K ++ YGC N D ++ + L G +IV PDE + V+VN+CAV+ K+
Sbjct: 46 VMKAHLITYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCAVRGKPVDKVRSL 105
Query: 61 IKELLDSGKK----VIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAVEYALRGEK 113
+ +L + V + GCL + R V +LG S+ I A+E R
Sbjct: 106 LGDLRKQKAQRSLVVGMMGCLAQLEEGQQIARKFEVDVLLGPGSLLDIGAALESNERF-- 163
Query: 114 LISVPDWRKRNLDKLD--FPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEK 171
W + D+L P + + I GC + CTYC RG S P+
Sbjct: 164 ------WGLQFKDELHDHIPPPPSGKLQAHLTIMRGCDHHCTYCIVPTTRGPQVSRHPDD 217
Query: 172 IVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTNL------AKLLDEITAIEGEFRVRVGM 225
I+ + + G +E+ L ++ YG D G L A LL + A G RV+
Sbjct: 218 ILRELDMQLAAGVREVTLLGQNVNAYGVDQGAKLKGYPSFADLLRMVGA-SGIERVK--- 273
Query: 226 MNPNHVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+H + F +++ A + I +F+HLPVQSG + +LRRM R Y E++ + + +K
Sbjct: 274 FTTSHPMNFTEDVAAAIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQIKK 333
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAK-WKQLPG 343
PD+ L TDIIVGFPGE +E FQ ++ L + D + YSPRPGT + K ++ LP
Sbjct: 334 HIPDVVLATDIIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPR 393
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEG-KKGNVDAVTMNYKHVILP--- 399
+ ER + L + S N + +G +VL+ G+ G ++ T ++P
Sbjct: 394 ELKTERLQRLIARQKDWSARKNAQKVGTVQQVLLRGDAHDAGFLEGHTRGNHPTVVPKAI 453
Query: 400 -FGNSGEFRIAEIKNATSTYLLGEVM 424
+G +++ I +AT + G ++
Sbjct: 454 GADGAGVYQV-RIDHATPHMMYGHIL 478
>gb|AAF54531.1| (AE003687) CG6345 gene product [Drosophila melanogaster]
Length = 583
Score = 153 bits (382), Expect = 4e-36
Identities = 117/426 (27%), Positives = 203/426 (47%), Gaps = 48/426 (11%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K++ E YGC N D E++ ++L G+ +P+E +++++ +CAV+D E++I R+K
Sbjct: 93 KVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLK 152
Query: 63 ELLDSGKK---------VIVTGCLPHVNPDVIDER------VSGILGVKSIDRIIQAVEY 107
L K + + GC+ + + E+ ++G K + R++ +
Sbjct: 153 HLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISRH 212
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
G I+V + RL+ + V I GC N CTYC F RG +S
Sbjct: 213 Y--GNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSR 270
Query: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTGCY------------------GFDI-------G 202
IV VK +QG KE+ L ++ Y GF G
Sbjct: 271 PLASIVAEVKALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKTGG 330
Query: 203 TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDND 261
T A LL + + R+R +P F DE++E +D + K LHLP QSG+
Sbjct: 331 TPFAALLRSVAQAVPDMRIRFTSPHPKD---FSDEVLEVIRDHPNVCKQLHLPAQSGNTQ 387
Query: 262 ILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDK 321
+L RM R Y+ E + E+V+ R+ P++ L +D I GF GE +E FQ +V LI++++ +
Sbjct: 388 VLERMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNV 447
Query: 322 VNVSRYSPRPGTIA-AKWK-QLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHG 379
+ YS R T A ++K +P + ER + + ++ + + ++++K G++ +LI G
Sbjct: 448 AYLFAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLILIEG 507
Query: 380 EGKKGN 385
+ K+ +
Sbjct: 508 KSKRSD 513
>sp|Q55803|Y082_SYNY3 HYPOTHETICAL 49.4 KD PROTEIN SLR0082 >gi|7429883|pir||S76611
hypothetical protein slr0082 - Synechocystis sp. (strain
PCC 6803) >gi|1001718|dbj|BAA10555.1| (D64004)
hypothetical protein [Synechocystis sp.]
Length = 443
Score = 151 bits (377), Expect = 2e-35
Identities = 108/385 (28%), Positives = 191/385 (49%), Gaps = 13/385 (3%)
Query: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
I I + GC +NR D E M LL AG+++ + + + V+VN+C+ ++ R + E
Sbjct: 7 IAINHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVE 66
Query: 64 LLDSGKKVIVTGCLP-HVNPDVIDE--RVSGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
L ++ KK++++GCL H +++E ++G I+ + +G+++ ++
Sbjct: 67 LAEAKKKIVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQGQRVKAISPN 126
Query: 121 RKRNLDKLDFPRL-SPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWA 179
D+ + PR + + +AEGC C +C RG +S E IV +
Sbjct: 127 PSFIADE-NLPRYRTTNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQL 185
Query: 180 IKQGYKEIWLSAEDTGCYGFDI--GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDE 237
QG KE+ L ++ T YG D+ LA+LL + ++ + +R+ P + +
Sbjct: 186 ASQGVKELILISQITTNYGLDLYGEPKLAELLQALGKVDIPW-IRIHYAYPTGLTP---K 241
Query: 238 LIEAYQDE-KIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
+IEA +D + +L LP+Q DILR M R + + ++I+ + PD L T I
Sbjct: 242 VIEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLKTALPDAVLRTTFI 301
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERSRLLHR 355
VGFPGE +E F ++ ++R + D V V +SP GT A +P ++ +R L
Sbjct: 302 VGFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVPEEVMGDRRDRLMA 361
Query: 356 IRLQISYEINQKYIGKKVEVLIHGE 380
++ IS + N +G+ ++VLI E
Sbjct: 362 LQQPISAQKNAACLGQTLDVLIEQE 386
>emb|CAB16849.1| (Z99708) putative protein [Arabidopsis thaliana]
>gi|7270587|emb|CAB80305.1| (AL161589) putative protein
[Arabidopsis thaliana]
Length = 587
Score = 150 bits (375), Expect = 3e-35
Identities = 118/433 (27%), Positives = 198/433 (45%), Gaps = 59/433 (13%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGH-EIVYDPDEGEIVVVNSCAVKDPTERKIARRI 61
+IY E YGC N D EI+ A++ +G+ E+V DP+ E++ VN+CA+++ E+++ +R+
Sbjct: 77 RIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRL 136
Query: 62 ----------KELLDSGK-------KVIVTGCLPHVNPDVI---DERVSGILG---VKSI 98
K +G+ KV+V GC+ D I D+ V + G + +
Sbjct: 137 NYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 196
Query: 99 DRIIQAVEYALRG-EKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCAT 157
R+++ V+Y +G L+S+ + + R+S ++ V + GC N C +C
Sbjct: 197 PRLLEEVDYGQKGINTLLSLEE----TYADISPVRISENSITAFVSVMRGCNNMCAFCIV 252
Query: 158 RFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFD----------------- 200
F RG +S E I+ V + G KE+ L ++ Y D
Sbjct: 253 PFTRGRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFS 312
Query: 201 -------IGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDE-KIYKFLH 252
+G A LLD ++ E R R +P + DEL+ +D I +H
Sbjct: 313 SRCKVKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKD---YPDELLYLMRDRHNICNLIH 369
Query: 253 LPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVE 312
LP QSG++ IL +M R YT E + ++VK+ R PD+ + +D I GF GE +E Q ++
Sbjct: 370 LPAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLS 429
Query: 313 LIRRIRPDKVNVSRYSPRPGTIAAK--WKQLPGWIVKERSRLLHRIRLQISYEINQKYIG 370
L+R + D + YS R T A + +P + + R L + + +G
Sbjct: 430 LVRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVG 489
Query: 371 KKVEVLIHGEGKK 383
VL+ G K+
Sbjct: 490 STQLVLVEGPNKR 502
>pir||E81291 hypothetical protein Cj1454c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968882|emb|CAB73877.1|
(AL139078) hypothetical protein Cj1454c [Campylobacter
jejuni]
Length = 439
Score = 150 bits (375), Expect = 3e-35
Identities = 108/392 (27%), Positives = 195/392 (49%), Gaps = 19/392 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M K+Y+ + GC +N D EIM L HL+ +E+ +P + ++++VN+C D +++
Sbjct: 1 MSKLYLMSLGCNKNLVDSEIM--LGHLSAYELCDEPSKADVLIVNTCGFIDSAKKESINA 58
Query: 61 IKELLDSGKK---VIVTGCL-PHVNPDVIDE--RVSGILGVKSIDRIIQAVEYALRGEKL 114
I +L + KK ++VTGCL +++ E V GV +RI + + L+ L
Sbjct: 59 ILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMI---LKKTNL 115
Query: 115 ISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVG 174
S + + K ++ + + IAEGC C++CA +G LKS I+
Sbjct: 116 FSNSTYLQSENSKRI---ITGSNSHAFIKIAEGCNQKCSFCAIPSFKGKLKSREISSIIA 172
Query: 175 WVKWAIKQGYKEIWLSAEDTGCYGFDIGTN--LAKLLDEITAIEGEFRVRVGMMNPNHVL 232
+K + +GYK+ A+DT Y FD G L +L+DE+ I+G R+ + P
Sbjct: 173 ELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGIRAARILYLYPTSAS 232
Query: 233 KFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLH 292
+ L + I A E + +P+Q +++L+ M R +E++ K P+ L
Sbjct: 233 EALIKRIIA--SEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLN-LMKSAPNSFLR 289
Query: 293 TDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRL 352
T IVG PGE + F+ E ++ D+++V YS T A +Q+P ++ +R ++
Sbjct: 290 TGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDMEQVPFKVINKRLKI 349
Query: 353 LHRIRLQISYEINQKYIGKKVEVLIHGEGKKG 384
+ +I ++ + +K +G+K V+ G+ +G
Sbjct: 350 IEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEG 381
>sp|Q9ZDB6|Y416_RICPR HYPOTHETICAL PROTEIN RP416 >gi|7429898|pir||G71699 hypothetical
protein RP416 - Rickettsia prowazekii
>gi|3860973|emb|CAA14873.1| (AJ235271) unknown
[Rickettsia prowazekii]
Length = 421
Score = 146 bits (364), Expect = 6e-34
Identities = 109/381 (28%), Positives = 185/381 (47%), Gaps = 25/381 (6%)
Query: 6 IENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELL 65
I +GC N + EI+ L L+G + + + N+CAV E++ + I++
Sbjct: 14 IVTFGCRLNIYESEIIRKNLELSGLD--------NVAIFNTCAVTKSAEKQARQAIRKAK 65
Query: 66 DSGK--KVIVTGCLPHVNPDVIDE--RVSGILG--VKSIDRIIQAVEYALRGEKLISVPD 119
+ K+IVTGC NP + V ++G K + Q + + ++SV +
Sbjct: 66 KNNPDLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITDQKISVNDIMSVKE 125
Query: 120 WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWA 179
+ D + + + GC + CT+C + RG +S IV VK
Sbjct: 126 TACHLVSSFDGKSRA------FIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQVKHL 179
Query: 180 IKQGYKEIWLSAEDTGCYGFDI--GTNLAKLLDEITAIEGEF-RVRVGMMNPNHVLKFLD 236
+ +G+KE+ ++ D YG D+ A+++ + + E R+R+ ++ + L
Sbjct: 180 VLKGFKEVVITGVDVTAYGSDLPGSPTFAQMIKRVLKLVPELKRMRLSSIDIAEIDDELF 239
Query: 237 ELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDII 296
ELI AY E+I H+ VQSGD+ IL+RM R + E ++ R P+++ DII
Sbjct: 240 ELI-AYS-ERIMPHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPEVSFGADII 297
Query: 297 VGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRI 356
GFP E +E F+ + +LI ++V YS R GT AA+ Q+P I KER+++L +
Sbjct: 298 AGFPTETNEMFENTRKLILEAELQYLHVFPYSEREGTPAARMPQVPQNIRKERAKILRQD 357
Query: 357 RLQISYEINQKYIGKKVEVLI 377
E +++IG+KVE+LI
Sbjct: 358 GFNQLNEFFKRHIGQKVELLI 378
>pir||H82054 conserved hypothetical protein VC2620 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657209|gb|AAF95761.1|
(AE004328) conserved hypothetical protein [Vibrio
cholerae]
Length = 470
Score = 145 bits (363), Expect = 7e-34
Identities = 113/398 (28%), Positives = 192/398 (47%), Gaps = 24/398 (6%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI + GC +N D E + L G+EIV + ++V+VN+C D ++ I
Sbjct: 34 KIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIG 93
Query: 63 ELLDSGKKVIVTGCLPHVNPDV--IDERVSGILGVKSIDRIIQAV-EYALRGEK---LIS 116
E L KVIVTGCL ++ + V GI G + +++ V +YA +
Sbjct: 94 EALKENGKVIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQYAPKPAHNPFTSL 153
Query: 117 VPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWV 176
VPD + L+P+ Y + I+EGC + CT+C RG L S +I+G
Sbjct: 154 VPDHGVK---------LTPKH-YAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEA 203
Query: 177 KWAIKQGYKEIWLSAEDTGCYGFDIGTNL-----AKLLDEITAIEGEFRVRVGMMNPNHV 231
+ G KE+ + ++DT YG D +L + + I A+ E + ++V
Sbjct: 204 ERLKNAGVKELLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMGIWVRLHYV 263
Query: 232 LKF--LDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDL 289
+ +DE+I + K+ +L +P Q +L+ M R E E +K++R+ P+L
Sbjct: 264 YPYPHVDEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPEL 323
Query: 290 NLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKE 348
+ + IVGFPGE +E FQ ++ ++ + D+V +YSP G A + + Q+P + ++
Sbjct: 324 VIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQD 383
Query: 349 RSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNV 386
R ++ +IS QK IG ++VLI ++G +
Sbjct: 384 RFERFMLVQQEISAAKLQKRIGSTMQVLIDEVDEEGAI 421
>sp|Q09316|YQT5_CAEEL HYPOTHETICAL 61.3 KD PROTEIN F25B5.5 IN CHROMOSOME III
>gi|7499793|pir||T16145 hypothetical protein F25B5.5 -
Caenorhabditis elegans >gi|726392|gb|AAC46526.1|
(U23172) F25B5.5 gene product [Caenorhabditis elegans]
Length = 547
Score = 139 bits (347), Expect = 6e-32
Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 53/463 (11%)
Query: 9 YGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKEL---- 64
YGC N +D EI+ +++ G + +IV++ +C+++D E+K+ ++K +
Sbjct: 86 YGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQLKLIRSNS 145
Query: 65 LDSGKKVIVTGCLPH-VNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLISVPDWR 121
++ G+ V V GC+ V D++++R V+ + G S + + V A G I+V
Sbjct: 146 VNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSL 205
Query: 122 KRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIK 181
+ R+ + + I GC N CTYC F RG +S E IV V+
Sbjct: 206 DETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRD 265
Query: 182 QGYKEIWLSAEDTGCY---------------------GFDI-------GTNLAKLLDEIT 213
QGYK++ L ++ Y GF G LL+++
Sbjct: 266 QGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFTTLLEKVA 325
Query: 214 AIEGEFRVRVGMMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVE 273
+ R R +P L ELI + + + K LHLP QSGD++ L RM R YT +
Sbjct: 326 DAAPDIRFRFTSPHPKDFPMQLIELIASRPN--LCKQLHLPAQSGDDETLERMERGYTRD 383
Query: 274 EFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGT 333
+ +V + R P ++L +D I GF GE ++A Q ++ LIR +R V YS R T
Sbjct: 384 LYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFPYSMRGKT 443
Query: 334 IA--AKWKQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKK-------- 383
A +P + R L + + + ++NQ IG + VL+ G+ K+
Sbjct: 444 RAHHRLTDDVPEDVKARRHLDLTTVFREEALKLNQALIGSEQTVLLEGKSKRDASFSHGR 503
Query: 384 --GNVDAVTMNYKHVILPFGNSGEFRIAEIKNATSTYLLGEVM 424
G V AV N K + P G++ I +A S L +++
Sbjct: 504 IDGGVKAVFDNSKLCLEP----GQYAKILITDANSQTLKAQLI 542
>sp|Q9ZMF0|Y285_HELPJ HYPOTHETICAL PROTEIN HP0285/JHP0270 >gi|7445346|pir||G71952
hypothetical protein jhp0270 - Helicobacter pylori
(strain J99) >gi|4154794|gb|AAD05851.1| (AE001464)
putative [Helicobacter pylori J99]
Length = 418
Score = 139 bits (346), Expect = 7e-32
Identities = 90/336 (26%), Positives = 165/336 (48%), Gaps = 15/336 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M K+Y + +GC N D ++M +L + E +I+++NSC V + T+ +
Sbjct: 1 MKKVYFKTFGCRTNLFDTQVMGE--NLKDFSATLEEQEADIIIINSCTVTNGTDSAVRSY 58
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLISVP 118
+++ K+V+ TGC + E+ + G+ G + ++I L+ +K +
Sbjct: 59 ARKMARLDKEVLFTGCGVKTQGKELFEKGLLKGVFGHDNKEKI----NALLQEKKRFFID 114
Query: 119 D-WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
D ++LD +T FI I EGC C YC RG +S+ KI+ V
Sbjct: 115 DNLENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
Query: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDE 237
+G +E+ L+ + G YG D G+N+A+L+ +++ I G R+R+G + PN + DE
Sbjct: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQITGLKRIRIGSLEPNQI---NDE 230
Query: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
+E +++ + K LH+ +Q + +L RM R + E+++ K + + TD IV
Sbjct: 231 FLELLEEDFLEKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIASK--NFAIGTDFIV 288
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGT 333
G PGE + F+++ + + + ++ YS R T
Sbjct: 289 GHPGESESVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
>pir||G72074 hypothetical protein - Chlamydophila pneumoniae (strain CWL029)
>gi|4376761|gb|AAD18617.1| (AE001632) Hypothetical
Protein [Chlamydophila pneumoniae CWL029]
Length = 421
Score = 138 bits (345), Expect = 1e-31
Identities = 100/374 (26%), Positives = 181/374 (47%), Gaps = 23/374 (6%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPD-EGEIVVVNSCAVKDPTERKIARRIKELLDSG 68
GC N+ + + L + G++ V D + ++ ++N+CAV E +++L
Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAVRQLCRQN 75
Query: 69 KK--VIVTGCLPHVNPDVID--ERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKRN 124
++VTGCL + + +R ++ K R+I EK+ S
Sbjct: 76 PTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEKSRLI---------EKIFSYDT----T 122
Query: 125 LDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGY 184
+ ++ FI + +GC + C+YC + RG S EKI+ + + QGY
Sbjct: 123 FPEFKIHSFEGKSRAFI-KVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGY 181
Query: 185 KEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQD 244
+E+ ++ + G Y D +LA L++++ I G R+R+ ++P+ + + L I +
Sbjct: 182 REVVIAGINVGDY-CDGERSLASLIEQVDRIPGIERIRISSIDPDDITEDLHRAITS--S 238
Query: 245 EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDD 304
HL +QSG N IL+RM R Y+ +F + V++FR P TD+IVGFPGE D
Sbjct: 239 RHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGFPGESD 298
Query: 305 EAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERSRLLHRIRLQISYE 363
+ F+ ++ +I + KV+ +S R T A + Q+P ++ ER + L + ++ +
Sbjct: 299 QDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVAKRVGQK 358
Query: 364 INQKYIGKKVEVLI 377
K +G+ EVL+
Sbjct: 359 EMMKRLGETTEVLV 372
>pir||G81594 conserved hypothetical protein CP0277 [imported] - Chlamydophila
pneumoniae (strain AR39) >gi|7189201|gb|AAF38135.1|
(AE002186) conserved hypothetical protein [Chlamydophila
pneumoniae AR39] >gi|8978847|dbj|BAA98683.1| (AP002546)
hypothetical protein [Chlamydophila pneumoniae J138]
Length = 421
Score = 138 bits (345), Expect = 1e-31
Identities = 100/374 (26%), Positives = 181/374 (47%), Gaps = 23/374 (6%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPD-EGEIVVVNSCAVKDPTERKIARRIKELLDSG 68
GC N+ + + L + G++ V D + ++ ++N+CAV E +++L
Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAVRQLCRQN 75
Query: 69 KK--VIVTGCLPHVNPDVID--ERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKRN 124
++VTGCL + + +R ++ K R+I EK+ S
Sbjct: 76 PTAHIVVTGCLGESDKEFFASLDRQCTLVSNKEKSRLI---------EKIFSYDT----T 122
Query: 125 LDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGY 184
+ ++ FI + +GC + C+YC + RG S EKI+ + + QGY
Sbjct: 123 FPEFKIHSFEGKSRAFI-KVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGY 181
Query: 185 KEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQD 244
+E+ ++ + G Y D +LA L++++ I G R+R+ ++P+ + + L I +
Sbjct: 182 REVVIAGINVGDY-CDGERSLASLIEQVDQIPGIERIRISSIDPDDITEDLHRAITS--S 238
Query: 245 EKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDD 304
HL +QSG N IL+RM R Y+ +F + V++FR P TD+IVGFPGE D
Sbjct: 239 RHTCPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGFPGESD 298
Query: 305 EAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQLPGWIVKERSRLLHRIRLQISYE 363
+ F+ ++ +I + KV+ +S R T A + Q+P ++ ER + L + ++ +
Sbjct: 299 QDFEDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVAKRVGQK 358
Query: 364 INQKYIGKKVEVLI 377
K +G+ EVL+
Sbjct: 359 EMMKRLGETTEVLV 372
>sp|P56130|Y285_HELPY HYPOTHETICAL PROTEIN HP0285 >gi|7429897|pir||E64555 conserved
hypothetical protein HP0285 - Helicobacter pylori
(strain 26695) >gi|2313381|gb|AAD07353.1| (AE000547)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 418
Score = 138 bits (343), Expect = 2e-31
Identities = 90/336 (26%), Positives = 164/336 (48%), Gaps = 15/336 (4%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
M K+Y + +GC N D ++M+ +L + E +I+++NSC V + + +
Sbjct: 1 MKKVYFKTFGCRTNLFDTQVMSE--NLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
Query: 61 IKELLDSGKKVIVTGCLPHVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLISVP 118
K++ K+V+ TGC + E+ + G+ G + ++I L+ +K +
Sbjct: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKI----NALLQEKKRFFID 114
Query: 119 D-WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
D ++LD +T FI I EGC C YC RG +S+ KI+ V
Sbjct: 115 DNLENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
Query: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDE 237
+G +E+ L+ + G YG D G+N+A+L+ +++ I G R+R+G + PN + DE
Sbjct: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDE 230
Query: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
+E +++ + K LH+ +Q + +L RM R + E+++ K + + TD IV
Sbjct: 231 FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGT 333
G PGE F+++ + + + ++ YS R T
Sbjct: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
>pir||C81376 hypothetical protein Cj1006c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968441|emb|CAB73262.1|
(AL139076) hypothetical proteinCj1006c [Campylobacter
jejuni]
Length = 416
Score = 138 bits (343), Expect = 2e-31
Identities = 111/382 (29%), Positives = 183/382 (47%), Gaps = 19/382 (4%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K++ + +GC N D E++ + ++ +EI+ D ++ +I+VVNSC V + + I +
Sbjct: 4 KVFFKTFGCRTNIYDTELLKS--YVKDYEIINDENKAQIIVVNSCTVTNGADSGIKSYVN 61
Query: 63 ELLDSGKKVIVTGC-LPHVNPDVIDER-VSGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
+ G KVI+TGC +++D++ V G+LG + D+I + + G K
Sbjct: 62 TMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFL-----GAKTSFYELG 116
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
+DK T F V I EGC AC+YC RG +S + ++ V+
Sbjct: 117 NLNFIDKDIVCEYENHTKAF-VKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILG 175
Query: 181 KQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHV-LKFLDELI 239
GY EI L+ + G YG GT L KLL ++ I G R+R+G + P + FL+ L
Sbjct: 176 ANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRLGSLEPAQLDESFLEILD 235
Query: 240 EAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGF 299
EA+ + + LH+ +Q +LR M R + ++ K L TD IV
Sbjct: 236 EAW----LERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIASK--GYALGTDFIVAH 289
Query: 300 PGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQ-LPGWIVKERSRLLHRIRL 358
PGE +E +Q ++ + ++ +SPR T +A K + G + KER L I
Sbjct: 290 PGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVE 349
Query: 359 QISYEINQKYIGKKVEVLIHGE 380
+ +YE +K +EVL+ +
Sbjct: 350 KNNYEFRKKN-QVSLEVLVENQ 370
>gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha]
Length = 505
Score = 135 bits (336), Expect = 1e-30
Identities = 105/396 (26%), Positives = 175/396 (43%), Gaps = 26/396 (6%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGK 69
GC + D E + L G+ I D ++VVVN+C D ++ I E L
Sbjct: 69 GCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIGEALTENG 128
Query: 70 KVIVTGCLP-------HVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRK 122
KVIVTGCL H + +V + G ++ ++QAV L P
Sbjct: 129 KVIVTGCLGAKKDAAGHDIVSSVHPKVLAVTGPHALGEVMQAVHTHL------PKPHDPF 182
Query: 123 RNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQ 182
+L +L+P+ Y + I+EGC + C++C RG L S +++ + K
Sbjct: 183 TDLVPAAGIKLTPKH-YAYLKISEGCNHRCSFCIIPSMRGDLVSRPVAEVMLEAENLFKA 241
Query: 183 GYKEIWLSAEDTGCYGFDI--------GTNLAKLLDEITAIEGEFRVRVGMMNPNHVL-- 232
G KE+ + ++DT YG D+ G L + E+ A GE + G H +
Sbjct: 242 GVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGAWVRLHYVYP 301
Query: 233 -KFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNL 291
+DE+I + +L +P+Q D+L+RM R E+ + ++ +R+ P+L +
Sbjct: 302 YPHVDEIIPLMSQGHVLPYLDVPLQHAHPDVLKRMKRPANAEKTMDRIRAWREICPELTI 361
Query: 292 HTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKERS 350
+ I GFPGE + FQ ++ I D+V YSP G A LP + +ER
Sbjct: 362 RSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCFAYSPVEGATANDLPGALPDEVREERR 421
Query: 351 RLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNV 386
+ ++S Q+ +G+ + VL+ + G +
Sbjct: 422 ARFMEVAEEVSARRLQRKVGQTLRVLVDEVNQDGGI 457
>sp|O83735|Y754_TREPA HYPOTHETICAL PROTEIN TP0754 >gi|7429896|pir||E71284 conserved
hypothetical protein TP0754 - syphilis spirochete
>gi|3323060|gb|AAC65721.1| (AE001247) conserved
hypothetical protein [Treponema pallidum]
Length = 456
Score = 134 bits (335), Expect = 1e-30
Identities = 107/403 (26%), Positives = 191/403 (46%), Gaps = 28/403 (6%)
Query: 5 YIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKEL 64
+ E YGC N A+ + LL G D +++++N+C+V+ E ++ R+
Sbjct: 4 FFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLGLF 63
Query: 65 LDSGKK----VIVTGCLPHVNPDVIDER------VSGILGVKSIDRIIQAVEYALRGE-- 112
KK +I+ GC+ D I ++ V G + I Q +E L +
Sbjct: 64 SSLKKKRAFFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIEQKLTQKDY 123
Query: 113 --KLISVPDWRKRNLDKLDF--PRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYS 168
+ IS +R+ + F S + +PI GC N C++C + RG S
Sbjct: 124 RFEFIS-ERYREHPVSGYRFFASSYSEGSFQSFIPIMNGCNNFCSFCIVPYVRGREISRD 182
Query: 169 PEKIVGWVKWAIKQGYKEIWLSAEDTGCY-GFDIGTNLAK----LLDEITAIEGEFRVRV 223
+ I+ V ++G +EI L ++ Y G D N+ L + E + +++
Sbjct: 183 LDAILQEVDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHLVRRCEVKDQIKW 242
Query: 224 GMMNPNHVLKFLDELIEAY-QDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEF 282
+H D+LI Q+ ++ + +HLPVQ G N +L+RM R+YT E++ +V +
Sbjct: 243 IRFVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRSYTREQYLSLVGKL 302
Query: 283 RKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKW-KQL 341
+ P++ L TDI++GFPGE +E F+++++L+R + D + Y+PR GT A + ++
Sbjct: 303 KASVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRI 362
Query: 342 PGWIVKERSRLLHRIRLQISYEIN--QKYIGKKVEVLIHGEGK 382
P +RL I LQ+S + + +GK + VL+ +
Sbjct: 363 PD--ATRIARLQRVIALQMSTTLKKMRARVGKTLPVLVESRSR 403
>pir||T35685 hypothetical protein SC7C7.07 SC7C7.07 - Streptomyces coelicolor
>gi|3294240|emb|CAA19853.1| (AL031031) hypothetical
protein SC7C7.07 [Streptomyces coelicolor A3(2)]
Length = 493
Score = 134 bits (335), Expect = 1e-30
Identities = 111/431 (25%), Positives = 181/431 (41%), Gaps = 47/431 (10%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLD--- 66
GCARN D E +A L G ++V D +E ++ VVN+C + ++ + E D
Sbjct: 13 GCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDALLEANDLKG 72
Query: 67 --SGKKVIVTGCLPH-VNPDVIDE--RVSGILGVKSIDRIIQAVEYALRG---------- 111
+ V+ GC+ ++ D G+LG I ++ L G
Sbjct: 73 HGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGIHAAHTPRD 132
Query: 112 -EKL--------------ISVPDWRKRNLDKLDFPRLSPR---------TVYFIVPIAEG 147
KL +++P +L + P PR + V +A G
Sbjct: 133 RRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPVASVKLASG 192
Query: 148 CLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTN--L 205
C C++CA RG S P ++ +W +QG KEI L +E+ YG D+G L
Sbjct: 193 CDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSENNTSYGKDLGDIRLL 252
Query: 206 AKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRR 265
LL + ++G RVRV + P + L +++ + EK+ + L Q ++LR
Sbjct: 253 ESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTS--TEKVAPYFDLSFQHSAPNVLRA 310
Query: 266 MGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVS 325
M R + F E++ R K P+ + ++ IVGFPGE + + R D + V
Sbjct: 311 MRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARLDAIGVF 370
Query: 326 RYSPRPGTIAAKW-KQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKG 384
YS GT AA + +L +V ER + R+ ++ + + +G V VL+ G
Sbjct: 371 GYSDEEGTEAATYGDKLDEDVVAERLARVSRLAEELVSQRADERVGATVRVLVESVDPAG 430
Query: 385 NVDAVTMNYKH 395
D V +H
Sbjct: 431 EGDGVRGRAEH 441
>pir||G83532 conserved hypothetical protein PA0916 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946818|gb|AAG04305.1|AE004525_13 (AE004525)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 440
Score = 134 bits (334), Expect = 2e-30
Identities = 106/404 (26%), Positives = 190/404 (46%), Gaps = 34/404 (8%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+ + GC + D E + L + G+E+V ++ ++VVVN+C D + + I
Sbjct: 7 KVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIG 66
Query: 63 ELLDSGKKVIVTGCL---PHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPD 119
E + KVIVTGC+ H DV V + G + ++++ AV + P
Sbjct: 67 EAIAENGKVIVTGCMGVEEHAIRDV-HPSVLAVTGPQQYEQVVTAVHEVVP-------PK 118
Query: 120 WRKRNLDKLDFP---RLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWV 176
L L P +L+PR Y + I+EGC ++C++C RG L S ++
Sbjct: 119 TEHNPLVDLVPPQGVKLTPRH-YAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEA 177
Query: 177 KWAIKQGYKEIWLSAEDTGCYGFD------------IGTNLAKLLDEITAIEGEFRVRVG 224
+ +K G KE+ + ++DT YG D + T + +L + ++++ R+
Sbjct: 178 ERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYV 237
Query: 225 MMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
PN +D++I K+ +L +P Q +L+ M R ++ +K++R+
Sbjct: 238 YPYPN-----VDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWRE 292
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAK--WKQLP 342
P+L + + IVGFPGE +E FQ ++ + + D+V +YSP G A + + +P
Sbjct: 293 ICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVP 352
Query: 343 GWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHGEGKKGNV 386
+ ++R + IS Q +GK++EVLI ++G V
Sbjct: 353 DEVKQDRWERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAV 396
>dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sapiens]
Length = 587
Score = 133 bits (331), Expect = 4e-30
Identities = 117/481 (24%), Positives = 217/481 (44%), Gaps = 65/481 (13%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+Y+E YGC N D EI ++L +G+ + E +++++ +C++++ E+ I R+
Sbjct: 101 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH 160
Query: 63 EL--LDSGK-------KVIVTGCLPH------VNPDVIDERVSGILGVKSIDRIIQAVEY 107
+L L + + ++ + GC+ +N + + + ++G + + R++ E
Sbjct: 161 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 220
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ ++ D + D + + T F V I GC N C+YC F RG +S
Sbjct: 221 GQQAANVLLSLD--ETYADVMPVQTSASATSAF-VSIMRGCDNMCSYCIVPFTRGRERSR 277
Query: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTGCY------------------GFDI-------G 202
I+ VK +QG KE+ L ++ + GF G
Sbjct: 278 PIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGG 337
Query: 203 TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEA-YQDEKIYKFLHLPVQSGDND 261
A LLD+++ ++ E R+R +P F DE+++ ++ + I K +HLP QSG +
Sbjct: 338 LRFAHLLDQVSRVDPEMRIRFTSPHPKD---FPDEVLQLIHERDNICKQIHLPAQSGSSR 394
Query: 262 ILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDK 321
+L M R Y+ E + E+V R+ P ++L +D I GF GE +E ++V L+R + +
Sbjct: 395 VLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREAQYNM 454
Query: 322 VNVSRYSPRPGTIA--AKWKQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHG 379
+ YS R T A +P + R L I + + + NQ +G VL+ G
Sbjct: 455 GFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLVLVEG 514
Query: 380 EGKKGNVDAVTMNYKHVILPFGNS----------------GEFRIAEIKNATSTYLLGEV 423
K+ D N ++ + F ++ G++ + +I +A+S L G V
Sbjct: 515 LSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLKGHV 574
Query: 424 M 424
+
Sbjct: 575 L 575
>gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding protein [Rattus norvegicus]
Length = 586
Score = 132 bits (328), Expect = 9e-30
Identities = 111/481 (23%), Positives = 213/481 (44%), Gaps = 65/481 (13%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+Y+E YGC N D EI ++L +G+ + E +++++ +C++++ E+ I R+
Sbjct: 98 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH 157
Query: 63 ELLDSGKK---------VIVTGCLPH------VNPDVIDERVSGILGVKSIDRIIQAVEY 107
+L K + + GC+ +N + + + ++G + + R++ VE
Sbjct: 158 QLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVES 217
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ ++ D ++ + + SP V I GC N C+YC F RG +S
Sbjct: 218 GQQAANVLLSLDETYADIMPV---QTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 274
Query: 168 SPEKIVGWVKWAIKQGYKEIWLSAEDTGCY------------------GFDI-------G 202
I+ V+ +QG KE+ L ++ + GF G
Sbjct: 275 PVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQGG 334
Query: 203 TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDE-KIYKFLHLPVQSGDND 261
+ LLD+++ I+ E R+R +P F DE+++ ++ I K +HLP QSG +
Sbjct: 335 LRFSHLLDQVSRIDPEMRIRFTSPHPKD---FPDEVLQLIRERHNICKQIHLPAQSGSSR 391
Query: 262 ILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDK 321
+L M R Y+ E + +V R+ P + L +D I GF GE ++ ++V L+R ++ +
Sbjct: 392 VLEAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNT 451
Query: 322 VNVSRYSPRPGTIA--AKWKQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLIHG 379
+ YS R T A +P + R L + + + ++N +G VL+ G
Sbjct: 452 GFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEASKVNATSVGCTQLVLVEG 511
Query: 380 EGKKGNVDAVTMNYKHVILPFGNS----------------GEFRIAEIKNATSTYLLGEV 423
K+ D N ++ + F ++ G++ + +I +A+S L G +
Sbjct: 512 FSKRSTTDLCGRNDANLKVIFPDAEVEDITDPGLKVRAQPGDYVLVKIISASSQTLKGHI 571
Query: 424 M 424
+
Sbjct: 572 L 572
>emb|CAC15883.1| (AL355392) dJ1187J4.4 (novel protein (CGI-05) similar to rat CDK5
activator-binding protein) [Homo sapiens]
Length = 562
Score = 125 bits (310), Expect = 1e-27
Identities = 117/495 (23%), Positives = 218/495 (43%), Gaps = 79/495 (15%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+Y+E YGC N D EI ++L +G+ + E +++++ +C++++ E+ I R+
Sbjct: 62 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH 121
Query: 63 EL--LDSGK-------KVIVTGCLPH------VNPDVIDERVSGILGVKSIDRIIQAVEY 107
+L L + + ++ + GC+ +N + + + ++G + + R++ E
Sbjct: 122 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 181
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ ++ D + D + + T F V I GC N C+YC F RG +S
Sbjct: 182 GQQAANVLLSLD--ETYADVMPVQTSASATSAF-VSIMRGCDNMCSYCIVPFTRGRERSR 238
Query: 168 SPEKIVGWVKWAIK--------------QGYKEIWLSAEDTGCY---------------- 197
I+ VK + QG KE+ L ++ +
Sbjct: 239 PIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNL 298
Query: 198 --GFDI-------GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE-AYQDEKI 247
GF G A LLD+++ ++ E R+R +P F DE+++ ++ + I
Sbjct: 299 SRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPK---DFPDEVLQLIHERDNI 355
Query: 248 YKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAF 307
K +HLP QSG + +L M R Y+ E + E+V R+ P ++L +D I GF GE +E
Sbjct: 356 CKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDH 415
Query: 308 QRSVELIRRIRPDKVNVSRYSPRPGTIA--AKWKQLPGWIVKERSRLLHRIRLQISYEIN 365
++V L+R ++ + + YS R T A +P + R L I + + + N
Sbjct: 416 VQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKAN 475
Query: 366 QKYIGKKVEVLIHGEGKKGNVDAVTMNYKHVILPFGNS----------------GEFRIA 409
Q +G VL+ G K+ D N ++ + F ++ G++ +
Sbjct: 476 QTSVGCTQLVLVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLV 535
Query: 410 EIKNATSTYLLGEVM 424
+I +A+S L G V+
Sbjct: 536 KITSASSQTLRGHVL 550
>pir||E75615 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460480|gb|AAF12186.1|AE001862_12 (AE001862)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 504
Score = 124 bits (309), Expect = 2e-27
Identities = 107/397 (26%), Positives = 184/397 (45%), Gaps = 32/397 (8%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGK 69
GC + D E + L G+E+ + + V+VN+C P + I E LD+
Sbjct: 29 GCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSAIGEALDATG 88
Query: 70 KVIVTGCLPHVNPDVIDER---VSGILGVKSIDRIIQAV-------EYALRGEKLISVPD 119
KVIVTGCL P+ I ER V+ I G +++D ++ V + A G ++ P
Sbjct: 89 KVIVTGCLGE-RPEKIMERHPKVAAITGSEAVDDVMGHVRELLPIDQGAFTGLLPVAAPG 147
Query: 120 WR-------KRNLDKLDF----PRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYS 168
R + N D +L+PR Y V +AEGC + C +C RG+ S
Sbjct: 148 MRAGVETPQRENTRHGDVFAPSVKLTPRH-YAYVKVAEGCNHTCAFCIIPKLRGLQVSRD 206
Query: 169 PEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLL-DEITAIEGEFRVRVGMMN 227
++ I G KE+ + A+DT YG D+ ++ +++ A + V++G M
Sbjct: 207 AGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLRYRESEFQGEQVRAHLTDLAVKLGEMG 266
Query: 228 P----NHVLKF--LDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKE 281
++V + +D ++E K+ +L +P+Q IL+ M R ++ + I +
Sbjct: 267 AWVRMHYVYPYPHVDRVVELMAQGKVLPYLDIPLQHASPKILKLMRRPGAGKQLDTI-RR 325
Query: 282 FRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSP-RPGTIAAKWKQ 340
+R+ P+L + + IVGFPGE +E FQ ++ + R D+V YS A
Sbjct: 326 WREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFPYSDIEEADANALPGA 385
Query: 341 LPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLI 377
+P + +ER + +IS E + +G+ ++V+I
Sbjct: 386 VPEEVKQERLARFMEVAQRISTEKLSEKVGRVMDVII 422
>emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella succinogenes]
Length = 439
Score = 122 bits (304), Expect = 6e-27
Identities = 97/390 (24%), Positives = 194/390 (48%), Gaps = 28/390 (7%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+++ + GC +N D E+M L L +EI ++ ++++VN+C + +++ +
Sbjct: 4 KLHLISLGCTKNLVDSEVM--LGRLKSYEITPLIEKADVIIVNTCGFIEAAKQESLSVLF 61
Query: 63 ELLDSGKK---VIVTGCLPH-VNPDVIDE--RVSGILGVKSIDRIIQAVEYAL---RGEK 113
E L+ KK ++ +GCL + +++ E + I GV D+I Q V GE
Sbjct: 62 EALERRKKGAILVASGCLSERYHEELLREIPEIDIITGVGDYDKIDQMVRERQGFHSGEV 121
Query: 114 LISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIV 173
++ + + ++ +V+ V ++EGC C++CA +G L S + E +
Sbjct: 122 FLASEEQERV---------ITGSSVHAYVKLSEGCNQTCSFCAIPQFKGKLHSRTLESTL 172
Query: 174 GWVKWAIKQGYKEIWLSAEDTGCYGFDIGTN--LAKLLDEITAIEGEFRVRVGMMNPNHV 231
VK I +G+ + A+DT Y D G L +L+ + ++EG R+ + P+
Sbjct: 173 KEVKNLIAKGFTDFSFIAQDTSSYLRDRGEKEGLIQLIGALDSLEGIKSARILYLYPSTA 232
Query: 232 LKFLDELIEAYQDEKIYK-FLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLN 290
+LI+A Q ++ + + +P+Q +L+RM R ++ +E+++ R+ P
Sbjct: 233 SA---KLIQAIQKSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLERMRQ-VPHSF 288
Query: 291 LHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPGWIVKER 349
+ T +I+G PGE +E F+ + R D+VN+ YS GT A K + +L ++ R
Sbjct: 289 VRTTLILGHPGESEEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGKLDKRVINAR 348
Query: 350 SRLLHRIRLQISYEINQKYIGKKVEVLIHG 379
+ L +I + + ++ +G+++ V++ G
Sbjct: 349 LKRLDKIIQKQHRALLKEMVGQEIPVILEG 378
>gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [Zymomonas mobilis]
Length = 443
Score = 122 bits (304), Expect = 6e-27
Identities = 109/401 (27%), Positives = 182/401 (45%), Gaps = 38/401 (9%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
KI + + GC + D E + L G+ + DE ++V+VN+C D + + I
Sbjct: 10 KIGMVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIG 69
Query: 63 ELLDSGKKVIVTGCLPHVNPDVIDERVSGIL---GVKSIDRIIQAVEYALRGEKLISVPD 119
E + +VIVTGCL + + I ER IL G + + ++ AV A E V
Sbjct: 70 EAMAENGRVIVTGCLGN-EANRIRERFPDILAITGAQQYEEVVSAVHDAAPIEASPYVDL 128
Query: 120 WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWA 179
++ L +L+PR Y + I+EGC + C++C RG L S + I+ +
Sbjct: 129 VPEQGL------KLTPRH-YSYLKISEGCNHRCSFCIIPSLRGDLVSRRADAILREAEKL 181
Query: 180 IKQGYKEIWLSAEDTGCYGFDIG---------------TNLAKLLDEITAIEGEFRVRVG 224
+ G KE+ + +D+ YG D+ T+LA+ L E+ A VR+
Sbjct: 182 VAAGTKELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLTDLARGLGELGAW-----VRLH 236
Query: 225 MMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRK 284
+ P +D LI + I +L +P Q +L+RM R + + + ++R+
Sbjct: 237 YVYP---YPHVDNLIPLMAEGLILPYLDIPFQHASPSVLKRMKRPANEVKILDRLTKWRE 293
Query: 285 KFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWK-QLPG 343
PD+ L + +VGFPGE ++ FQ ++ + + D+V R+ G A + +P
Sbjct: 294 IVPDIALRSSFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFDGAVPE 353
Query: 344 WIVKERSRLLHRIRLQISYEINQKYIGKKVEVLI---HGEG 381
+ ER + L QIS Q IG+ + +I GEG
Sbjct: 354 EVKNERYQRLMEKAAQISEAKLQAKIGRDIATIIDRTDGEG 394
>gi|7706357 CGI-05 protein; hypothetical protein [Homo sapiens]
>gi|4929773|gb|AAD34147.1|AF152097_1 (AF152097) CGI-05
protein [Homo sapiens]
Length = 554
Score = 116 bits (289), Expect = 4e-25
Identities = 108/447 (24%), Positives = 197/447 (43%), Gaps = 64/447 (14%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+Y+E YGC N D EI ++L +G+ + +++++ +C++++ E+ I R+
Sbjct: 62 KVYLETYGCQMNVNDTEIAWSILQKSGY-LRPVTSRADVILLVTCSIREKAEQTIWNRLH 120
Query: 63 EL--LDSGK-------KVIVTGCLPH------VNPDVIDERVSGILGVKSIDRIIQAVEY 107
+L L + + ++ + GC+ +N + + + ++G + + R++ E
Sbjct: 121 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 180
Query: 108 ALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSY 167
+ ++ D + D + + T F V I GC N C+YC F RG +S
Sbjct: 181 GQQAANVLLSLD--ETYADVMPVQTSASATSAF-VSIMRGCDNMCSYCIVPFTRGRERSR 237
Query: 168 SPEKIVGWVKWAIK--------------QGYKEIWLSAEDTGCY---------------- 197
I+ VK + QG KE+ L ++ +
Sbjct: 238 PIASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNL 297
Query: 198 --GFDI-------GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE-AYQDEKI 247
GF G A LLD+++ ++ E R+R +P F DE+++ ++ + I
Sbjct: 298 SRGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPK---DFPDEVLQLIHERDNI 354
Query: 248 YKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAF 307
K +HLP QSG + +L M R Y+ E + E+V R+ P ++L +D I GF GE +E
Sbjct: 355 CKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDH 414
Query: 308 QRSVELIRRIRPDKVNVSRYSPRPGTIA--AKWKQLPGWIVKERSRLLHRIRLQISYEIN 365
++V L+R ++ + + YS R T A +P + R L I + + + N
Sbjct: 415 VQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKAN 474
Query: 366 QKYIGKKVEVLIHGEGKKGNVDAVTMN 392
Q +G VL+ G K+ D N
Sbjct: 475 QTSVGCTQLVLVEGLSKRSATDLCGRN 501
>gi|7705485 CGI-05 protein; hypothetical protein [Homo sapiens]
>gi|6841556|gb|AAF29131.1|AF161516_1 (AF161516) HSPC167
[Homo sapiens]
Length = 586
Score = 114 bits (282), Expect = 2e-24
Identities = 119/483 (24%), Positives = 216/483 (44%), Gaps = 70/483 (14%)
Query: 3 KIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIK 62
K+Y+E YGC N D EI ++L +G+ + E +++++ +C++++ E+ I R+
Sbjct: 101 KVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRLH 160
Query: 63 EL--LDSGK-------KVIVTGCL-PHVNPDVID-ERVSGILGVKSIDRIIQAVEYAL-R 110
+L L + + ++ + GC+ + ++++ E++ IL R + L R
Sbjct: 161 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPGCWLMLSR 220
Query: 111 GEKLISVPD-WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYC---ATRFARGV-LK 165
KL + W + L + + T F V I GC N C+YC + RGV L
Sbjct: 221 ASKLPTCCSLWTRPMLMSCQSRQGASATSAF-VSIMRGCDNMCSYCIVLSPGAGRGVGLL 279
Query: 166 SYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCY------------------GFDI------ 201
+S + A G KE+ L ++ + GF
Sbjct: 280 PHSRGS-----EEAFLAGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQ 334
Query: 202 -GTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIE-AYQDEKIYKFLHLPVQSGD 259
G A LLD+++ ++ E R+R +P F DE+++ ++ + I K +HLP QSG
Sbjct: 335 GGLRFAHLLDQVSRVDPEMRIRFTSPHPK---DFPDEVLQLIHERDNICKQIHLPAQSGS 391
Query: 260 NDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRIRP 319
+ +L M R Y+ E + E+V R+ P ++L +D I GF GE +E ++V L+R ++
Sbjct: 392 SRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQY 451
Query: 320 DKVNVSRYSPRPGTIA--AKWKQLPGWIVKERSRLLHRIRLQISYEINQKYIGKKVEVLI 377
+ + YS R T A +P + R L I + + + NQ +G VL+
Sbjct: 452 NMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEASKANQTSVGCTQLVLV 511
Query: 378 HGEGKKGNVDAVTMNYKHVILPFGNS----------------GEFRIAEIKNATSTYLLG 421
G K+ D N ++ + F ++ G++ + +I +A+S L G
Sbjct: 512 EGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTLRG 571
Query: 422 EVM 424
V+
Sbjct: 572 HVL 574
>sp|O83293|Y269_TREPA HYPOTHETICAL PROTEIN TP0269 >gi|7429895|pir||G71345 conserved
hypothetical protein TP0269 - syphilis spirochete
>gi|3322542|gb|AAC65257.1| (AE001208) conserved
hypothetical protein [Treponema pallidum]
Length = 482
Score = 111 bits (274), Expect = 2e-23
Identities = 105/422 (24%), Positives = 167/422 (38%), Gaps = 70/422 (16%)
Query: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVV---VNSCAVKDPTERKI 57
M + IE GC N + E +AAL G + VV +N+C V E+K
Sbjct: 1 MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKA 60
Query: 58 ARRIKELLDSGKKVI--VTGCLPHVNP---DVIDERVSGILGVKS--------------- 97
R ++ LL + I VTGC + P + +D+RV G +
Sbjct: 61 RRLVRLLLRTYPTAIALVTGCYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLV 120
Query: 98 ------IDRIIQAVEYALRGEK--------------------------LISVPDWRKRNL 125
ID+ + + L K L VP + ++
Sbjct: 121 QRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRVSV 180
Query: 126 DKLDFPRLSPRTVYFI----------VPIAEGCLNACTYCATRFARGVLKSYSPEKIVGW 175
P PR + + + +GC + C +C RFARG S +++G
Sbjct: 181 SSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR 240
Query: 176 VKWAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFL 235
V+ +G E+ L+ + Y + A LL+ I +R+ + P V
Sbjct: 241 VQALEARGMSEVVLTGVNLSQYRSG-SIDFAGLLELIVQETHTIHIRISSLYPESVTS-- 297
Query: 236 DELIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDI 295
+ A ++ HL VQSG + +LRRM R YT + + V + R + L DI
Sbjct: 298 -AFLRAIAHTRVSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDI 356
Query: 296 IVGFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIA-AKWKQLPGWIVKERSRLLH 354
IVGFPGE +E F + + + +R ++V +S RPGT A A ++P I ER +
Sbjct: 357 IVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQ 416
Query: 355 RI 356
++
Sbjct: 417 QL 418
>pir||T10441 conserved hypothetical protein - Mycoplasma iowae
>gi|942592|gb|AAC44030.1| (U29676) unknown [Mycoplasma
iowae]
Length = 249
Score = 110 bits (272), Expect = 3e-23
Identities = 71/246 (28%), Positives = 130/246 (51%), Gaps = 8/246 (3%)
Query: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQ 243
+KEI L+ +T Y + LL+ I ++G+FRVR+ + P + DE+I+
Sbjct: 6 FKEIVLTGVNTAGYLDENNNTFFDLLNNINKLDGDFRVRISSLEP---FQINDEIIDLVT 62
Query: 244 DEK--IYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPG 301
K + H+ +QSG +D+L++M R YT +EF +++++ K P N TD IVGFP
Sbjct: 63 SNKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFTTDYIVGFPT 122
Query: 302 EDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQIS 361
E DE ++S++ + +I+ +++ YS R T ++ +K + K+R + + ++
Sbjct: 123 ETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKDINDSTKKDRVKEITKLNYLNK 182
Query: 362 YEINQKYIGKKVEVLIHGEGKKGNV-DAVTMNYKHVILPFGNSGEFRI--AEIKNATSTY 418
E +KYIGK EVL + + + + Y V++ G++ E ++ IK
Sbjct: 183 KENLKKYIGKTCEVLFEKKKEDEKMWSGYSNEYCRVMVESGDNLENKMLKVRIKKIFFDS 242
Query: 419 LLGEVM 424
L+GE++
Sbjct: 243 LVGEII 248
>pir||E71902 hypothetical protein jhp0671 - Helicobacter pylori (strain J99)
>gi|4155233|gb|AAD06255.1| (AE001499) putative
[Helicobacter pylori J99]
Length = 439
Score = 108 bits (268), Expect = 1e-22
Identities = 87/386 (22%), Positives = 182/386 (46%), Gaps = 28/386 (7%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGK 69
GC++N D E+M L+ + + D + +++++N+C + +++ + I K
Sbjct: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKKADVILINTCGFIESAKQESIQTILNAAKDKK 72
Query: 70 K---VIVTGCLPHVNPDVIDERV------SGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
+ +I +GCL D I E + +G+ ID +I + + +S
Sbjct: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDILIAKKQNQFSEQVFLS---- 128
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
+ + ++ +V+ V I+EGC C++CA +G L+S + I+ V+
Sbjct: 129 -----EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEDLA 183
Query: 181 KQGYKEIWLSAEDTGCYGFDIG--TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDEL 238
+GYK++ A+D+ + +D G L +L+ I + R+ + P+ EL
Sbjct: 184 LKGYKDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL---EL 240
Query: 239 IEAYQDEKIYK-FLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
I A +D I++ + +P+Q + +L++M RN + +++ K+ + + + IIV
Sbjct: 241 IGAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAM-KQVKESFIRSTIIV 299
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
G P E++ F+ + R D++N+ +S T A +++P I+ R + L++I
Sbjct: 300 GHPEENESEFEELSAFLDEFRFDRLNIFAFSAEENTHAYSLEKVPKKIINARIKALNKIA 359
Query: 358 LQISYEINQKYIGKKVEVLI-HGEGK 382
L+ + + K ++ L+ H EG+
Sbjct: 360 LKHQNHSFKALLNKPIKALVEHKEGE 385
>pir||F64611 conserved hypothetical protein HP0734 - Helicobacter pylori
(strain 26695) >gi|2313856|gb|AAD07780.1| (AE000586)
conserved hypothetical protein [Helicobacter pylori
26695]
Length = 439
Score = 99.1 bits (243), Expect = 9e-20
Identities = 83/387 (21%), Positives = 179/387 (45%), Gaps = 29/387 (7%)
Query: 10 GCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGK 69
GC++N D E+M L+ + + D +++++N+C + +++ + I K
Sbjct: 15 GCSKNLVDSEVMLGKLY--NYTLTNDAKSADVILINTCGFIESAKQESIQTILNAAKDKK 72
Query: 70 K---VIVTGCLPHVNPDVIDERV------SGILGVKSIDRIIQAVEYALRGEKLISVPDW 120
+ +I +GCL D I E + +G+ ID +I + + +S
Sbjct: 73 EGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYDKIDIMIAKKQNQFSEQVFLS---- 128
Query: 121 RKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAI 180
+ + ++ +V+ V I+EGC C++CA +G L+S + I+ V+
Sbjct: 129 -----EHYNARIITGSSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVENLA 183
Query: 181 KQGYKEIWLSAEDTGCYGFDIG--TNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDEL 238
+GY ++ A+D+ + +D G L +L+ I + R+ + P+ EL
Sbjct: 184 LKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTL---EL 240
Query: 239 IEAYQDEKIYK-FLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
I A + I++ + +P+Q + +L++M RN + +++ + K+ + + + IIV
Sbjct: 241 IGAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLL-DAMKQVKESFIRSTIIV 299
Query: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR 357
G P E++ F+ + + D++N+ +S T A +++P + R + L++I
Sbjct: 300 GHPEENESEFEELSAFLDEFQFDRLNIFAFSAEENTHAYSLEKVPKKTINARIKALNKIA 359
Query: 358 LQISYEINQKYIGKKVEVLIHGEGKKG 384
L+ + + K ++ L+ E K+G
Sbjct: 360 LKHQNHSFKALLNKPIKALV--ENKEG 384
>pir||A72408 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980678|gb|AAD35275.1|AE001703_4 (AE001703)
conserved hypothetical protein [Thermotoga maritima]
Length = 397
Score = 69.5 bits (167), Expect = 7e-11
Identities = 88/364 (24%), Positives = 153/364 (41%), Gaps = 28/364 (7%)
Query: 31 EIVYDPDEGEIVVVNSCAVKDPTERKIARRIKELLDSGKKVIVTGCLPHVNPDVIDERVS 90
EI P E IV + + T R+ +K L + G +I G PHV D
Sbjct: 38 EIKKFPPEKTIVAYSFMSFDLDTVRE---EVKTLKERGYTLIAGG--PHVTADPEGCLRM 92
Query: 91 GILGVKSIDRIIQAVEYALRGEKLISVPDWRKRNLDKLDFPRLSPRTVYFIVPIAEGCLN 150
G V + D +++ + K I ++ NL+ P L + +Y + I GC
Sbjct: 93 GFDHVFTGDGEENILKFLMGERKKIFDGISKRVNLNHYP-PFLPSKGIYMPIEITRGCPF 151
Query: 151 ACTYCATRFARG-VLKSYSPEKIVGWVKWAIKQGYKEIWLSAEDTGCYGFDIGT--NLAK 207
+C YC T G ++ + +V + K +K G K A ++ YG G N+ K
Sbjct: 152 SCAYCQTPIIAGRRVRHRDVDVVVHYAKLGVKHGRKLARFIAPNSFGYGSKNGVTPNVEK 211
Query: 208 L------LDEITAIEGEFRVRVGMMNPNHVLKFLDELIEAYQDEKIYKFLHLPVQSGDND 261
+ L ++ E F + P V DE+++ + + + + QSG +
Sbjct: 212 IEELLYGLKKVGIEEIYFGTFPSEVRPESV---TDEVLKVVKKYVNNRSIVIGAQSGSDR 268
Query: 262 ILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFPGEDDEAFQRSVELIRRI---R 318
IL+ + R +TVE+ EE +++ H D I GFP E +E +++ I +I
Sbjct: 269 ILKIIKRGHTVEQVEEAIEKI--SLHGFIPHVDFIFGFPFETEEDVEKTFSFIVKIVERY 326
Query: 319 PDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIR---LQISYEINQKYIGKKVEV 375
K++ + P PGT + PG + + + L R+ + Y + Q+ + +KV
Sbjct: 327 GAKIHAHTFMPLPGT--ELFNAGPGRLTEVHYKFLGRLASKGILDGYWMKQEMLARKVYE 384
Query: 376 LIHG 379
+ G
Sbjct: 385 IASG 388
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163948657
Number of Sequences: 2977
Number of extensions: 7106329
Number of successful extensions: 18998
Number of sequences better than 1.0e-10: 77
Number of HSP's better than 0.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 18728
Number of HSP's gapped (non-prelim): 88
length of query: 425
length of database: 189,106,746
effective HSP length: 54
effective length of query: 371
effective length of database: 156,788,448
effective search space: 58168514208
effective search space used: 58168514208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)