BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1135 (PAB1135) DE:Hypothetical protein
(154 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75024 hypothetical protein PAB1135 - Pyrococcus abyssi (st... 312 1e-84
pir||G71200 hypothetical protein PH1876 - Pyrococcus horikoshii ... 281 3e-75
gi|11499899 conserved hypothetical protein [Archaeoglobus fulgid... 111 5e-24
sp|Q57666|Y213_METJA HYPOTHETICAL PROTEIN MJ0213 >gi|2128182|pir... 109 2e-23
pir||C72624 hypothetical protein APE1451 - Aeropyrum pernix (str... 101 5e-21
pir||G69191 conserved hypothetical protein MTH689 - Methanobacte... 94 6e-19
gb|AAG19637.1| (AE005052) Vng1287c [Halobacterium sp. NRC-1] 83 1e-15
>pir||E75024 hypothetical protein PAB1135 - Pyrococcus abyssi (strain Orsay)
>gi|5459149|emb|CAB50635.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 154
Score = 312 bits (792), Expect = 1e-84
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MAGKLQAHNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVV 60
MAGKLQAHNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVV
Sbjct: 1 MAGKLQAHNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVV 60
Query: 61 DAEIKHSRNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVS 120
DAEIKHSRNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVS
Sbjct: 61 DAEIKHSRNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVS 120
Query: 121 EGEDVIHVRIKVKAFPMKKEAVVKAVREWLEGED 154
EGEDVIHVRIKVKAFPMKKEAVVKAVREWLEGED
Sbjct: 121 EGEDVIHVRIKVKAFPMKKEAVVKAVREWLEGED 154
>pir||G71200 hypothetical protein PH1876 - Pyrococcus horikoshii
>gi|3258315|dbj|BAA30998.1| (AP000007) 154aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 154
Score = 281 bits (711), Expect = 3e-75
Identities = 134/154 (87%), Positives = 148/154 (96%)
Query: 1 MAGKLQAHNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVV 60
M +LQAHN++IRTFIHATEDPEKVLEALETLFPE+ISPKDV+FEVIETEGYFGNPILVV
Sbjct: 1 MGKRLQAHNVKIRTFIHATEDPEKVLEALETLFPEDISPKDVDFEVIETEGYFGNPILVV 60
Query: 61 DAEIKHSRNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVS 120
DAEI+HSRN+RKFLENLR LS+EDRKYL EHAEEKVDETGTFYIRFDKQKAYLGE+KVS
Sbjct: 61 DAEIRHSRNVRKFLENLRNSLSEEDRKYLLEHAEEKVDETGTFYIRFDKQKAYLGEIKVS 120
Query: 121 EGEDVIHVRIKVKAFPMKKEAVVKAVREWLEGED 154
EG+DVIHVRIKVKAFPM+KEAVV AV++WLEGE+
Sbjct: 121 EGQDVIHVRIKVKAFPMRKEAVVNAVKKWLEGEE 154
>gi|11499899 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483243|pir||F69539 conserved hypothetical protein
AF2318 - Archaeoglobus fulgidus
>gi|2648201|gb|AAB88938.1| (AE000944) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 145
Score = 111 bits (274), Expect = 5e-24
Identities = 59/148 (39%), Positives = 93/148 (61%), Gaps = 8/148 (5%)
Query: 1 MAGKLQAHNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVV 60
M GK++ +R+ +H+TED EKV EA+ TLFP E E V + +G++GNP+ +
Sbjct: 1 MKGKIEW--VRVSAVVHSTEDREKVGEAISTLFPFEF-----EIAVSKAKGHYGNPMEYL 53
Query: 61 DAEIKHSRNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVS 120
+ E+ S I+KF +NL LL ++ + L E+++DE +IR DKQKAYLGEV ++
Sbjct: 54 EVELTKSSEIKKFWKNLLELLGEQAEEIL-STLEDRIDEQNVLHIRIDKQKAYLGEVSLT 112
Query: 121 EGEDVIHVRIKVKAFPMKKEAVVKAVRE 148
G D I V++++ +P K+E V++ RE
Sbjct: 113 SGGDPIAVKLRLVTYPSKREKVIEFARE 140
>sp|Q57666|Y213_METJA HYPOTHETICAL PROTEIN MJ0213 >gi|2128182|pir||F64326 hypothetical
protein MJ0213 - Methanococcus jannaschii
>gi|1498989|gb|AAB98204.1| (U67477) M. jannaschii
predicted coding region MJ0213 [Methanococcus
jannaschii]
Length = 149
Score = 109 bits (269), Expect = 2e-23
Identities = 54/142 (38%), Positives = 89/142 (62%), Gaps = 5/142 (3%)
Query: 8 HNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVVDAEIKHS 67
++I++ +HATED +KVLEA+E PE + + ++ +V+ET+GYFGNPI +++ ++
Sbjct: 3 NSIKLSAIVHATEDEDKVLEAIEFFIPENVDEEKIDLDVVETQGYFGNPIKIINVNVE-G 61
Query: 68 RNIRKFLENLRGLLSKEDRKY--LWEHAEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDV 125
+ +K +++ L+ +D+ L + +V E FY+RFDKQKAYLGE +V +G+D+
Sbjct: 62 KEAKKIFKHIIDLIKSDDKNINKLKKDLHLRV-EDNKFYVRFDKQKAYLGECRVVDGDDI 120
Query: 126 IHVRIKVKAF-PMKKEAVVKAV 146
I K F P KE VK +
Sbjct: 121 IRAVFNFKIFTPKNKEEKVKEI 142
>pir||C72624 hypothetical protein APE1451 - Aeropyrum pernix (strain K1)
>gi|5105135|dbj|BAA80449.1| (AP000061) 156aa long
hypothetical protein [Aeropyrum pernix]
Length = 156
Score = 101 bits (249), Expect = 5e-21
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 10 IRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVVDAEIKHSRN 69
+ R +HATED EKV+ AL + P +S +E EG++GN I V+ IK R
Sbjct: 10 LEARVSVHATEDREKVVRALSNILP--LSGGKIEVVEDVFEGHYGNQIRVITVRIKDGRT 67
Query: 70 IRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIHVR 129
K LE++ L DR+YL E EE+VD+ G YIR KQ AYLGE ++ EG+DVI +
Sbjct: 68 ASKVLEDILSKLPSHDRRYLLETLEERVDKNGVLYIRVSKQDAYLGEARIYEGDDVIRIA 127
Query: 130 IKVKAFPMKKEAVVKAVREWLE 151
+ F + V RE L+
Sbjct: 128 V---GFQGGRRKAVSFYRELLK 146
>pir||G69191 conserved hypothetical protein MTH689 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621774|gb|AAB85194.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 138
Score = 94.4 bits (231), Expect = 6e-19
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 8 HNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVVDAEIKHS 67
HNI R ++ TED EKV+EAL + P ++ EGY GNPI V+ +
Sbjct: 6 HNISYRLMVYGTEDEEKVIEALRNVIPGATPERE------SAEGYHGNPITVLRGRLDRR 59
Query: 68 RNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIH 127
R +R+F+E + + E++ DE G ++R DKQKA G + D IH
Sbjct: 60 RALREFMEKFTEVFRGR-----MDELEDRFDENGNLFLRLDKQKALEGVWEPVRHGDAIH 114
Query: 128 VRIKVKAFPMKKEAVVKAVREWLE 151
++IKV+A+P K+E V+ +R+ LE
Sbjct: 115 LKIKVEAYPAKREVAVENIRKILE 138
>gb|AAG19637.1| (AE005052) Vng1287c [Halobacterium sp. NRC-1]
Length = 140
Score = 83.1 bits (202), Expect = 1e-15
Identities = 48/143 (33%), Positives = 82/143 (56%), Gaps = 11/143 (7%)
Query: 8 HNIRIRTFIHATEDPEKVLEALETLFPEEISPKDVEFEVIETEGYFGNPILVVDAEIKHS 67
H I +R F + TE +V +AL PE DVE E ++EG+ G+ I V+ ++ +
Sbjct: 7 HYIDLRVFCYDTEADSRVADALGHFLPE-----DVEIERTDSEGHLGDRIGVLSTRVERA 61
Query: 68 RNIRKFLENLRGLLSKEDRKYLWEHAEEKVDETGTFYIRFDKQKAYLGEVKVSEGEDVIH 127
++R L+ LR D + + + +E+VD+ + ++ DKQ AYLG+ ++ +G I
Sbjct: 62 DDMRHVLDQLR---DGADIEQIRDQLDERVDDNCSLFVHLDKQAAYLGDAQLGDG---IS 115
Query: 128 VRIKVKAFPMKKEAVVKAVREWL 150
+R KV+A+P KK+A V+ R+ L
Sbjct: 116 LRAKVEAYPAKKDAAVENARDAL 138
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.137 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56073472
Number of Sequences: 2977
Number of extensions: 2245057
Number of successful extensions: 6864
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6852
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 189,106,746
effective HSP length: 55
effective length of query: 99
effective length of database: 156,189,961
effective search space: 15462806139
effective search space used: 15462806139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)