BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1136 (PAB1136) DE:Hypothetical protein
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75024 hypothetical protein PAB1136 - Pyrococcus abyssi (st... 425 e-118
pir||H71200 hypothetical protein PH1877 - Pyrococcus horikoshii ... 317 5e-86
pir||F69191 conserved hypothetical protein MTH688 - Methanobacte... 76 3e-13
pir||B64442 hypothetical protein MJ1139 - Methanococcus jannasch... 73 4e-12
>pir||F75024 hypothetical protein PAB1136 - Pyrococcus abyssi (strain Orsay)
>gi|5459150|emb|CAB50636.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 212
Score = 425 bits (1082), Expect = e-118
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MAGGGGLKFVEMDVRNDDAYKLAKEWFDEVVFSVKFQDSIDKELLREAERNYGLVAILLV 60
MAGGGGLKFVEMDVRNDDAYKLAKEWFDEVVFSVKFQDSIDKELLREAERNYGLVAILLV
Sbjct: 1 MAGGGGLKFVEMDVRNDDAYKLAKEWFDEVVFSVKFQDSIDKELLREAERNYGLVAILLV 60
Query: 61 NPRLSIVKEAVQRFKQNYLIYVESSDLRTIRYSIERGVDAIISPWVGRKDPGIDHTLARM 120
NPRLSIVKEAVQRFKQNYLIYVESSDLRTIRYSIERGVDAIISPWVGRKDPGIDHTLARM
Sbjct: 61 NPRLSIVKEAVQRFKQNYLIYVESSDLRTIRYSIERGVDAIISPWVGRKDPGIDHTLARM 120
Query: 121 MAKKGVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPR 180
MAKKGVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPR
Sbjct: 121 MAKKGVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPR 180
Query: 181 DLATLGIIIGMEVQQAKAALSTYPDIILKRLK 212
DLATLGIIIGMEVQQAKAALSTYPDIILKRLK
Sbjct: 181 DLATLGIIIGMEVQQAKAALSTYPDIILKRLK 212
>pir||H71200 hypothetical protein PH1877 - Pyrococcus horikoshii
>gi|3258316|dbj|BAA30999.1| (AP000007) 212aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 212
Score = 317 bits (805), Expect = 5e-86
Identities = 147/212 (69%), Positives = 185/212 (86%), Gaps = 1/212 (0%)
Query: 1 MAGGGGLKFVEMDVRNDDAYKLAKEWFDEVVFSVKFQDSIDKELLREAERNYGLVAILLV 60
M GGGG+KF+EMD+R+ +AY+LAKEWFDEVV S+KF + +DKE LREA + YG VAILL
Sbjct: 1 MVGGGGVKFIEMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGKVAILLS 60
Query: 61 NPRLSIVKEAVQRFKQNYLIYVESSDLRTIRYSIERGVDAIISPWVGRKDPGIDHTLARM 120
NP+ S+V++ VQ+FK +YLIYVES+DLR IRYSIE+GVDAIISPWV RKDPGIDH LA++
Sbjct: 61 NPKPSLVRDTVQKFK-SYLIYVESNDLRVIRYSIEKGVDAIISPWVNRKDPGIDHVLAKL 119
Query: 121 MAKKGVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPR 180
M KK VALGFSLRPLL ++PY++AN+L+FM KAW+L KYKV+RF+TSSA EKW +R+PR
Sbjct: 120 MVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPR 179
Query: 181 DLATLGIIIGMEVQQAKAALSTYPDIILKRLK 212
DL +LG++IGME+ QAKA++S YP+IILKRLK
Sbjct: 180 DLISLGVVIGMEIPQAKASISMYPEIILKRLK 211
>pir||F69191 conserved hypothetical protein MTH688 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621773|gb|AAB85193.1| (AE000848) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 245
Score = 76.1 bits (184), Expect = 3e-13
Identities = 45/145 (31%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 67 VKEAVQRFKQNY-LIYVESSDLRTIRYSIE-RGVDAIISPWVGRKDPGIDHTLARMMAKK 124
++ +V +F++ +IYV +L+ R + E R VD + +P+ R+DPGI+H LAR A+
Sbjct: 82 MRRSVNKFRKKADVIYVSGGNLKVNRAACESRRVDVLSAPYTSRRDPGINHVLAREAARN 141
Query: 125 GVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPRDLAT 184
VA+ L ++ + +A +L+ R+ +L K+ +TS A+ + +R P D+
Sbjct: 142 NVAVELPLADVIGSWLKVRARVLEQFREILKLHRKFGFPLLLTSRASSIYDLRTPGDIMN 201
Query: 185 LGIIIGMEVQQAKAALSTYPDIILK 209
L GME +A+ +L++ P IL+
Sbjct: 202 LAECFGMESSEAEESLTSTPASILE 226
>pir||B64442 hypothetical protein MJ1139 - Methanococcus jannaschii
>gi|1499992|gb|AAB99146.1| (U67556) M. jannaschii
predicted coding region MJ1139 [Methanococcus
jannaschii]
Length = 232
Score = 72.6 bits (175), Expect = 4e-12
Identities = 40/118 (33%), Positives = 68/118 (56%), Gaps = 2/118 (1%)
Query: 67 VKEAVQRFKQN-YLIYVESSDLRTIRYSIE-RGVDAIISPWVGRKDPGIDHTLARMMAKK 124
+++ V++F+ ++I +E L+ R ++E VD + +P +GRKD GIDH LAR+ +
Sbjct: 67 LRDKVKKFRNKCHIILIEGGVLKINRAAVELHDVDILSTPELGRKDSGIDHVLARLASNH 126
Query: 125 GVALGFSLRPLLEASPYDKANILKFMRKAWQLTNKYKVKRFITSSANEKWHIRWPRDL 182
VA+ + + LL Y++A L F R +L K+ V I++ A K+ I+ P DL
Sbjct: 127 RVAIELNFKTLLNKDGYERARTLLFFRNNLKLAKKFDVPVVISTDAENKYQIKNPYDL 184
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.138 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72063912
Number of Sequences: 2977
Number of extensions: 2649693
Number of successful extensions: 6225
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6221
Number of HSP's gapped (non-prelim): 4
length of query: 212
length of database: 189,106,746
effective HSP length: 54
effective length of query: 158
effective length of database: 156,788,448
effective search space: 24772574784
effective search space used: 24772574784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)