BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1137 (PAB1137) DE:Hypothetical protein
         (399 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75024 hypothetical protein PAB1137 - Pyrococcus abyssi (st...   773  0.0
pir||A71201 hypothetical protein PH1878 - Pyrococcus horikoshii ...   627  e-179

>pir||G75024 hypothetical protein PAB1137 - Pyrococcus abyssi (strain Orsay)
           >gi|5459151|emb|CAB50637.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 399
           
 Score =  773 bits (1975), Expect = 0.0
 Identities = 399/399 (100%), Positives = 399/399 (100%)

Query: 1   MRLDIDLLLSSPEELENEGRRLIKEGRTKDGIKMLVRAAKKYEEIGNIRKAAGLYKEAGV 60
           MRLDIDLLLSSPEELENEGRRLIKEGRTKDGIKMLVRAAKKYEEIGNIRKAAGLYKEAGV
Sbjct: 1   MRLDIDLLLSSPEELENEGRRLIKEGRTKDGIKMLVRAAKKYEEIGNIRKAAGLYKEAGV 60

Query: 61  LLKNKFNLYEQAKPLIRRVAYLYLRLIEEEVDKEEVNLARLTTSCLSVIEAFTFLNDRGS 120
           LLKNKFNLYEQAKPLIRRVAYLYLRLIEEEVDKEEVNLARLTTSCLSVIEAFTFLNDRGS
Sbjct: 61  LLKNKFNLYEQAKPLIRRVAYLYLRLIEEEVDKEEVNLARLTTSCLSVIEAFTFLNDRGS 120

Query: 121 LEKYAKEFAKMFEDLGANYLEANEVDSAIIAYESAYRYYDLIGDKEGIKRIAGKLVEIFG 180
           LEKYAKEFAKMFEDLGANYLEANEVDSAIIAYESAYRYYDLIGDKEGIKRIAGKLVEIFG
Sbjct: 121 LEKYAKEFAKMFEDLGANYLEANEVDSAIIAYESAYRYYDLIGDKEGIKRIAGKLVEIFG 180

Query: 181 RIAEDAIETERYEDSGEAFEKVANYIKVIFGYDDRYKELMETAGKHYEKASRIYYAEGEL 240
           RIAEDAIETERYEDSGEAFEKVANYIKVIFGYDDRYKELMETAGKHYEKASRIYYAEGEL
Sbjct: 181 RIAEDAIETERYEDSGEAFEKVANYIKVIFGYDDRYKELMETAGKHYEKASRIYYAEGEL 240

Query: 241 EELTRLLLKAQYSYLLARNFKRANLIGLNLIKILNQVINTLRSEGMFDRVGEKLMEFAEA 300
           EELTRLLLKAQYSYLLARNFKRANLIGLNLIKILNQVINTLRSEGMFDRVGEKLMEFAEA
Sbjct: 241 EELTRLLLKAQYSYLLARNFKRANLIGLNLIKILNQVINTLRSEGMFDRVGEKLMEFAEA 300

Query: 301 LVALGKIENAVKLYREALEESGGLIDFKARFRISIIKYLAAKEGSLEILRSLDAIDFMIK 360
           LVALGKIENAVKLYREALEESGGLIDFKARFRISIIKYLAAKEGSLEILRSLDAIDFMIK
Sbjct: 301 LVALGKIENAVKLYREALEESGGLIDFKARFRISIIKYLAAKEGSLEILRSLDAIDFMIK 360

Query: 361 NAKFLDAIELAEKVIKSHEEGEKILKEVYKAEGIVFPEG 399
           NAKFLDAIELAEKVIKSHEEGEKILKEVYKAEGIVFPEG
Sbjct: 361 NAKFLDAIELAEKVIKSHEEGEKILKEVYKAEGIVFPEG 399


>pir||A71201 hypothetical protein PH1878 - Pyrococcus horikoshii
           >gi|3258317|dbj|BAA31000.1| (AP000007) 393aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 393
           
 Score =  627 bits (1599), Expect = e-179
 Identities = 309/392 (78%), Positives = 355/392 (89%)

Query: 7   LLLSSPEELENEGRRLIKEGRTKDGIKMLVRAAKKYEEIGNIRKAAGLYKEAGVLLKNKF 66
           +LLSSPEELE EG + IKEG  KDGIKMLVRAAKKYEE G ++KAA LYKEAG+LLK++ 
Sbjct: 1   MLLSSPEELEGEGYKNIKEGNLKDGIKMLVRAAKKYEESGELKKAASLYKEAGLLLKDRL 60

Query: 67  NLYEQAKPLIRRVAYLYLRLIEEEVDKEEVNLARLTTSCLSVIEAFTFLNDRGSLEKYAK 126
            L+EQAKPLIRRVAYL+++LIE EVDK EVNL +LT SCLSVIEAFT L D  +L+KYA+
Sbjct: 61  RLHEQAKPLIRRVAYLHIKLIEREVDKNEVNLVKLTNSCLSVIEAFTLLEDDNNLKKYAR 120

Query: 127 EFAKMFEDLGANYLEANEVDSAIIAYESAYRYYDLIGDKEGIKRIAGKLVEIFGRIAEDA 186
           EFAKMFEDLG NYLEANEVDSAI++YESAYRYYDLIGDKEGIK+IAGKL+EIFGRIAE+A
Sbjct: 121 EFAKMFEDLGTNYLEANEVDSAIVSYESAYRYYDLIGDKEGIKKIAGKLIEIFGRIAEEA 180

Query: 187 IETERYEDSGEAFEKVANYIKVIFGYDDRYKELMETAGKHYEKASRIYYAEGELEELTRL 246
           I  ERYEDSGEAFEKVANY+K IFGYD++YKELMETAGKHYEKAS++ YAEG+LE LTRL
Sbjct: 181 ISEERYEDSGEAFEKVANYVKTIFGYDEKYKELMETAGKHYEKASKLAYAEGDLENLTRL 240

Query: 247 LLKAQYSYLLARNFKRANLIGLNLIKILNQVINTLRSEGMFDRVGEKLMEFAEALVALGK 306
           LLKAQYSYLLARNF RANLIGLNLIK+LNQV+N LRSEG+FD+VGEKLMEFAEAL+ALGK
Sbjct: 241 LLKAQYSYLLARNFNRANLIGLNLIKMLNQVVNNLRSEGLFDKVGEKLMEFAEALIALGK 300

Query: 307 IENAVKLYREALEESGGLIDFKARFRISIIKYLAAKEGSLEILRSLDAIDFMIKNAKFLD 366
           IENA+K+Y+EAL+ESGGLID +AR RIS+IKYLAAKE  L +LR+LD I F+I+NAKFLD
Sbjct: 301 IENAMKVYKEALDESGGLIDLRARIRISVIKYLAAKEQDLNMLRALDTIQFLIRNAKFLD 360

Query: 367 AIELAEKVIKSHEEGEKILKEVYKAEGIVFPE 398
           AIELAE  I+ +E GE+IL+E+YKAEGIVFPE
Sbjct: 361 AIELAENAIRKYEGGEEILREIYKAEGIVFPE 392


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.369 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130812123
Number of Sequences: 2977
Number of extensions: 5352681
Number of successful extensions: 18258
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18256
Number of HSP's gapped (non-prelim): 2
length of query: 399
length of database: 189,106,746
effective HSP length: 61
effective length of query: 338
effective length of database: 152,599,039
effective search space: 51578475182
effective search space used: 51578475182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)