BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1139 (PAB1139) DE:NADH-dependent DYHYDROGENASE RELATED
PROTEIN
(335 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75025 NADH-dependent dyhydrogenase related protein PAB1139... 678 0.0
pir||E71201 probable glucose-fructose oxidoreductase - Pyrococcu... 642 0.0
dbj|BAB04967.1| (AP001511) NADH-dependent dyhydrogenase [Bacillu... 141 1e-32
pir||H69216 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase relat... 138 9e-32
gb|AAK43117.1| Dehydrogenase, putative [Sulfolobus solfataricus] 135 8e-31
pir||D71201 hypothetical protein PH1881 - Pyrococcus horikoshii ... 122 5e-27
pir||E75096 NADH-dependent dehydrogenase homolog. PAB0775 - Pyro... 122 8e-27
sp|O05389|YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN CSBX-NADA ... 121 1e-26
gb|AAK43149.1| Dehydrogenase, putative [Sulfolobus solfataricus] 120 3e-26
pir||A75025 NADH-dependent dyhydrogenase related protein PAB1138... 116 5e-25
pir||S70672 dehydrogenase homolog - Bordetella pertussis >gi|992... 113 3e-24
pir||B72359 lipopolysaccharide biosynthesis protein BplA - Therm... 111 9e-24
gb|AAC23913.1| (AF039207) NADH-dependent dehydrogenase homolog [... 109 4e-23
pir||D72381 dehydrogenase - Thermotoga maritima (strain MSB8) >g... 105 9e-22
pir||B75475 glucose-fructose oxidoreductase - Deinococcus radiod... 104 2e-21
dbj|BAB07562.1| (AP001520) oxidoreductase [Bacillus halodurans] 102 4e-21
emb|CAB60174.1| (AL132824) putative dehydrogenase [Streptomyces ... 102 6e-21
sp|P40332|YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN DEGA-NPRB I... 102 8e-21
gb|AAD41367.1|AF151698_4 (AF151698) putative oxidoreductase [Agr... 99 7e-20
emb|CAB02496.1| (Z80356) glucose-fructose oxidoreductase [Zymomo... 97 3e-19
pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase >gi|2098324|... 97 3e-19
sp|Q07982|GFO_ZYMMO GLUCOSE--FRUCTOSE OXIDOREDUCTASE PRECURSOR (... 97 3e-19
sp|Q44258|CBAC_ALCSB 1-CARBOXY-3-CHLORO-3,4-DIHYDROXYCYCLO HEXA-... 96 4e-19
gb|AAK43115.1| Dehydrogenase, putative [Sulfolobus solfataricus] 96 6e-19
emb|CAB88961.1| (AL353864) putative oxidoreductase. [Streptomyce... 95 1e-18
gb|AAC01706.1| (AF040570) unknown [Amycolatopsis mediterranei] 94 2e-18
gb|AAD45293.1|AF156256_1 (AF156256) putative dehydrogenase [Vibr... 94 2e-18
dbj|BAB05884.1| (AP001514) unknown conserved protein [Bacillus h... 92 6e-18
gb|AAK43113.1| Dehydrogenase, putative [Sulfolobus solfataricus] 92 9e-18
sp|P09400|STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN STRI >gi|... 92 9e-18
sp|Q05184|PHT4_PSEPU PUTATIVE 4,5,-DIHYDROXYPHTHALATE DEHYDROGEN... 91 1e-17
dbj|BAB04429.1| (AP001509) unknown conserved protein [Bacillus h... 88 2e-16
pir||A83617 probable oxidoreductase PA0237 [imported] - Pseudomo... 86 6e-16
sp|P49305|YMO1_RHIME HYPOTHETICAL 36.4 KD PROTEIN IN MOCC-MOCA I... 85 1e-15
gb|AAD03557.1| (AF095748) phthalate dihydrodiol dehydrogenase [B... 84 2e-15
dbj|BAB05940.1| (AP001514) unknown conserved protein [Bacillus h... 84 2e-15
gb|AAC31183.1| (AF076240) putative NADH-inositol dehydrogenase M... 83 6e-15
dbj|BAB05939.1| (AP001514) dehydrogenase [Bacillus halodurans] 82 1e-14
emb|CAC11395.1| (AL445063) glucose-fructose oxidoreductase relat... 81 2e-14
sp|O68965|MI2D_RHIME MYO-INOSITOL 2-DEHYDROGENASE >gi|3088561|gb... 80 4e-14
emb|CAB88965.1| (AL353864) putative oxidoreductase. [Streptomyce... 79 6e-14
sp|Q54728|YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION (ORF-... 78 1e-13
gb|AAC31181.1| (AF076240) unknown [Rhizobium leguminosarum bv. v... 77 2e-13
emb|CAC12307.1| (AL445066) glucose-fructose oxidoreductase relat... 76 5e-13
sp|P49307|MOCA_RHIME RHIZOPINE CATABOLISM PROTEIN MOCA >gi|21208... 76 7e-13
emb|CAB96550.1| (AJ007932) D-oliose 4-ketoreductase [Streptomyce... 74 2e-12
gb|AAG09709.1|AF218837_4 (AF218837) unknown [Pasteurella multocida] 73 4e-12
pir||S76068 hypothetical protein - Synechocystis sp. (strain PCC... 73 6e-12
sp|P74041|Y816_SYNY3 HYPOTHETICAL 41.5 KD PROTEIN SLL0816 >gi|74... 71 2e-11
emb|CAC11912.1| (AL445065) hypothetical protein [Thermoplasma ac... 71 2e-11
sp|P55480|Y4HM_RHISN HYPOTHETICAL PROTEIN Y4HM PRECURSOR >gi|746... 70 3e-11
gb|AAD13550.1| (AF080235) oxidoreductase homolog [Streptomyces c... 70 3e-11
sp|P26935|MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE >gi|80338|pir|... 70 4e-11
pir||A69834 conserved hypothetical protein yhjJ - Bacillus subti... 69 5e-11
gb|AAD51832.1|AF175299_7 (AF175299) ThuB [Sinorhizobium meliloti] 69 9e-11
>pir||B75025 NADH-dependent dyhydrogenase related protein PAB1139 - Pyrococcus
abyssi (strain Orsay) >gi|5459154|emb|CAB50640.1|
(AJ248288) NADH-dependent DYHYDROGENASE RELATED PROTEIN
[Pyrococcus abyssi]
Length = 335
Score = 678 bits (1730), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL
Sbjct: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM
Sbjct: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG
Sbjct: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
Query: 181 FMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWAN 240
FMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWAN
Sbjct: 181 FMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWAN 240
Query: 241 PKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQ 300
PKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQ
Sbjct: 241 PKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQ 300
Query: 301 DKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
DKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL
Sbjct: 301 DKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
>pir||E71201 probable glucose-fructose oxidoreductase - Pyrococcus horikoshii
>gi|3258321|dbj|BAA31004.1| (AP000007) 335aa long
hypothetical glucose-fructose oxidoreductase [Pyrococcus
horikoshii]
Length = 335
Score = 642 bits (1639), Expect = 0.0
Identities = 309/335 (92%), Positives = 329/335 (97%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
MVRFG+ISYAHPHALRYA+TIRA+RRAKLVAISGDGANS LAK+EAKKYGAKFYQ+YE+L
Sbjct: 1 MVRFGIISYAHPHALRYASTIRASRRAKLVAISGDGANSALAKVEAKKYGAKFYQNYEQL 60
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
L+D+SVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM
Sbjct: 61 LKDKSVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
VPFNPRFTQPLQKAKEMIE GEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDI+KSGGGG
Sbjct: 121 VPFNPRFTQPLQKAKEMIESGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIRKSGGGG 180
Query: 181 FMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWAN 240
FMDTAPHGIDSLFWLTESEP++VYADIG KIWGF+VDDIGTALIEFKN VIA+LTAGWAN
Sbjct: 181 FMDTAPHGIDSLFWLTESEPVKVYADIGSKIWGFEVDDIGTALIEFKNNVIALLTAGWAN 240
Query: 241 PKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQ 300
PKGYPYGLE+KYYIVGDDGFLDIR+AYPDFTVYQ+KTEKIFWERADVEGI+NAFIDAIQQ
Sbjct: 241 PKGYPYGLEMKYYIVGDDGFLDIRTAYPDFTVYQEKTEKIFWERADVEGIINAFIDAIQQ 300
Query: 301 DKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
D+EPPITGEDALKNLA+VLAAYESSKTGK VK+ L
Sbjct: 301 DREPPITGEDALKNLALVLAAYESSKTGKVVKINL 335
>dbj|BAB04967.1| (AP001511) NADH-dependent dyhydrogenase [Bacillus halodurans]
Length = 340
Score = 141 bits (352), Expect = 1e-32
Identities = 86/303 (28%), Positives = 155/303 (50%), Gaps = 15/303 (4%)
Query: 42 AKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALT 101
AK AK YGA Y D+ +LL E ++ V + H ++I A + G +L EKP+A +
Sbjct: 42 AKKVAKLYGAIAYTDHMQLLEKEEIDLVSVCTPNAYHAPISIDALKAGTHVLCEKPMATS 101
Query: 102 LEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMF 161
E+ + ++KAA +AG+ LM+ N RF +KA+++I G+IGK+ T + P +
Sbjct: 102 AEECEAMIKAAEEAGMCLMIGHNQRFVSSHEKARQLIATGDIGKIYSFRTTFGHGGPEGW 161
Query: 162 LEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGT 221
+ SWFF ++ G D H D L +L E + V A + VDD
Sbjct: 162 SVDGENSWFFKKDQAFIGAMGDLGVHKADLLRYLLGEEVVEVGAFVTTSAKQGDVDDNAV 221
Query: 222 ALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIR-SAYPDFTVYQDKTEKI 280
A+++ ++G++ LTA W+ Y + + G++ L + + V+ E +
Sbjct: 222 AILKTESGIVGTLTASWS----YVAKEDNSTILYGENAILRLEDDPHYSLIVHYKNGETV 277
Query: 281 FWERADVEG----------IVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKA 330
+E ++ ++ F++++ + KEPPI+G++ +L ++LAA E+S+TG+
Sbjct: 278 KYELGQIQSNDEGGQTDSRVIAHFVNSVLEGKEPPISGKEGYASLNIILAAMEASRTGRT 337
Query: 331 VKV 333
+K+
Sbjct: 338 IKL 340
>pir||H69216 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2621968|gb|AAB85373.1| (AE000863)
3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related
protein [Methanobacterium thermoautotrophicum]
Length = 318
Score = 138 bits (344), Expect = 9e-32
Identities = 103/330 (31%), Positives = 159/330 (47%), Gaps = 26/330 (7%)
Query: 5 GVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDE 64
GV + + HA Y AN L+A+S D L K+ A KY Y DYE LL
Sbjct: 10 GVGAMGYNHARVYYRLKNAN----LMAVS-DIMKGTLQKV-ANKYDTVGYVDYENLLEIP 63
Query: 65 SVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFN 124
+E V + + T H V + A E K +L+EKPIA TLE+ +++VK ARK G+KL
Sbjct: 64 EIEVVSVCVPTTHHYNVVMDALEHDKHVLVEKPIAFTLEEAEDMVKTARKKGLKLGTGHV 123
Query: 125 PRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDT 184
RF +QKAKE+IE IG + + ++ V P F + G +D
Sbjct: 124 ERFNPAVQKAKELIENDVIG--DVVSASAKRVGP------------FPPRIKDVGVTIDL 169
Query: 185 APHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGY 244
A H +D + +L VYA +G + + +D + +FK+G+ +L W P
Sbjct: 170 AIHDLDVMHYLFSEPVAEVYAVMGSILEKCEYEDHAEIMTKFKSGITGILEVNWLTPY-- 227
Query: 245 PYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERAD-VEGIVNAFIDAIQQDKE 303
K I G DG +++ VY + + + + ++ + +F+ ++ D+E
Sbjct: 228 ---KRRKLAITGTDGIINVDYIDQRLDVYGKFAQDVDIKHEEPLKNEIKSFLMSVINDEE 284
Query: 304 PPITGEDALKNLAVVLAAYESSKTGKAVKV 333
P ITGED + L VLAA +S++ + VKV
Sbjct: 285 PEITGEDGIYALRTVLAAMKSAREHRPVKV 314
>gb|AAK43117.1| Dehydrogenase, putative [Sulfolobus solfataricus]
Length = 355
Score = 135 bits (336), Expect = 8e-31
Identities = 107/364 (29%), Positives = 175/364 (47%), Gaps = 41/364 (11%)
Query: 2 VRFGVISYA-HPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
+R+G+I H I+ + ++VA++ + + ++ K Y DY ++
Sbjct: 3 IRYGIIGVGGHGKNRHLIPLIKLKNKVEIVAVAD--VKKERCEEVSSQFNIKCYLDYMEM 60
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
+ ES+ AV I T H +AI +G ++L++KP+ LE+ KE+V AR G+KLM
Sbjct: 61 VEKESLNAVSIVTPTGLHSRIAINVLNKGVNVLVDKPLGSNLEEVKEVVNTARNKGLKLM 120
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGG-G 179
V + RF+ LQ KE+I G +G+ Y Y+ + GI T F D SGG G
Sbjct: 121 VGYWSRFSPALQYGKEIIHNGLLGE---PYVAYGYLVRRRGIPGIPT--FIDKTLSGGRG 175
Query: 180 GFMDTAPHGIDSLFWLTE-SEPIRVYADIGPKI----------WG------FQVDDIGTA 222
+D + ID+L L + +PI V + K WG F +DD
Sbjct: 176 ALLDIGCYLIDNLLSLLKFRKPISVMGKVYTKFGNVKEEVKFNWGSWDPENFSLDDYAVG 235
Query: 223 LIEFKNGVIAVLTAGWANPKGYPYGLEIKYY--IVGDDGFLD--IRSAYPDFTVYQDKTE 278
L++ + V +L GW+ + +E K Y I+GD G ++ A D + + +TE
Sbjct: 236 LVKLEGDVSLILEVGWSANVSH---VEEKSYVRILGDKGGIEGSGHEAIVDIS-FHSRTE 291
Query: 279 KIFWERADV-------EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAV 331
+ V ++NAF+D+I D+EPPITGE+++ +++ Y+SS K V
Sbjct: 292 NFLTDTKPVLRKVDPYFEMINAFVDSILTDREPPITGEESVTLHSIIDGIYKSSTEDKEV 351
Query: 332 KVEL 335
K+ L
Sbjct: 352 KISL 355
>pir||D71201 hypothetical protein PH1881 - Pyrococcus horikoshii
>gi|3258320|dbj|BAA31003.1| (AP000007) 371aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 371
Score = 122 bits (304), Expect = 5e-27
Identities = 103/348 (29%), Positives = 167/348 (47%), Gaps = 40/348 (11%)
Query: 6 VISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDES 65
+ + AH ALR TI AK+VA+ N AK K+ AK + ++ L ++
Sbjct: 45 IFNLAHKPALRSLRTI-----AKVVAVMD--INEEAAKKAGKELNAKVFTSLDEFL-EQD 96
Query: 66 VEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNP 125
++ V + TY H E+AI+A + GK +++EKPIALT E+ ++++K A + G+KL V
Sbjct: 97 MDVVEVLTPTYTHAEIAIKALKAGKHVIVEKPIALTSEEAEKMIKEAEEQGLKLFVGHVR 156
Query: 126 RFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTA 185
RF + + KE+I+ I ++ +++ P W++D KS GG +D
Sbjct: 157 RFDKRWTQIKEVIKTRNILPMQIRKIEVQHLPFPA------DYWYWDESKS-GGVIIDLG 209
Query: 186 PHGIDSLFWLTESEPIRVYADIGPKIWG----FQVDDIGTALIEFKNGVIAVLTAGWANP 241
H D L W ESEP+ V+A +G I G + D I+F+ + W+ P
Sbjct: 210 VHVTDFLRWFFESEPVEVFA-VGKAIRGEARVNKTYDHVVMFIKFEGNKTGIGEVSWSYP 268
Query: 242 KGYPYGLEIKYY-IVGDDGFLD-----------IRSAY--PDFTVYQDKTEKIFWERADV 287
YG+ + I+G +G + I+S++ P F+ + F
Sbjct: 269 MTPKYGVFYHHLDIIGKNGRIRYTPLDTPVVGVIKSSFEMPRFSPMLSTFPQAF------ 322
Query: 288 EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
E + F + I+ + EP +T DAL L + A ES K G+ VKVE+
Sbjct: 323 EAELRHFFECIKSNCEPVVTARDALIALQIAEKARESIKKGEPVKVEV 370
>pir||E75096 NADH-dependent dehydrogenase homolog. PAB0775 - Pyrococcus abyssi
(strain Orsay) >gi|5458586|emb|CAB50074.1| (AJ248286)
NADH-DEPENDENT DEHYDROGENASE HOMOLOG. [Pyrococcus
abyssi]
Length = 315
Score = 122 bits (302), Expect = 8e-27
Identities = 98/333 (29%), Positives = 161/333 (47%), Gaps = 29/333 (8%)
Query: 5 GVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDE 64
GV + HA Y+ + + +L+ ++ N AK A+ + + ++DY +L++ E
Sbjct: 7 GVGKMGYHHARIYSELAKEGK-VELIGVAD--INFERAKEVAETFKTRAFKDYRELIK-E 62
Query: 65 SVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFN 124
V+AV IA+ T H+EV + E +L+EKPIA ++E +EI+KAA+K V LMV
Sbjct: 63 GVDAVSIAVPTSLHREVTMDFIENEVSVLVEKPIAESIESAQEIIKAAKKMNVVLMVGHV 122
Query: 125 PRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDT 184
RF + K KE IE+G +G+ I T++ PM D G +D
Sbjct: 123 ERFNPAVLKLKETIERGMLGE---IVTMTAKRVGPMVTRISDV-----------GVIIDL 168
Query: 185 APHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGY 244
A H ID + +LT S I VYA +V+D L+ F+NG ++ P
Sbjct: 169 AVHDIDVMSFLTTSRVIEVYAKARNVKHPAKVEDYALILLSFENGANGIIETNRLTPH-- 226
Query: 245 PYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEG----IVNAFIDAIQQ 300
+VG +G + + T+Y + E I+ + + E + F++ +++
Sbjct: 227 ---KTRTLNVVGTEGIAYLDYINQELTLYNE--EWIYKAKINKEEPLKLEIEHFLECVKE 281
Query: 301 DKEPPITGEDALKNLAVVLAAYESSKTGKAVKV 333
K+P + GE+ L L V + A ESSK + V+V
Sbjct: 282 GKKPLVGGEEGLHALKVAVKALESSKKDEVVRV 314
>sp|O05389|YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN CSBX-NADA INTERGENIC REGION (ORF1)
>gi|7429795|pir||D69972 opine catabolism homolog yrbE -
Bacillus subtilis >gi|2635242|emb|CAB14737.1| (Z99118)
similar to opine catabolism [Bacillus subtilis]
>gi|6977802|emb|CAB75327.1| (Y15896) hypothetical
protein [Bacillus subtilis]
Length = 341
Score = 121 bits (300), Expect = 1e-26
Identities = 94/295 (31%), Positives = 138/295 (45%), Gaps = 33/295 (11%)
Query: 56 DYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKA 115
DY LL D ++A++I T H ++ AAE K I EKP++ +L++ E + A RK
Sbjct: 57 DYRDLLHDPDIDAIFICSPTAVHAQMIKEAAEAKKHIFCEKPVSFSLDETSEALAAVRKH 116
Query: 116 GVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKK 175
GV L V FN RF +K K ++E GEIG + S +PP D +
Sbjct: 117 GVTLQVGFNRRFDPHFKKIKTIVENGEIGTPHLLKITSRDPEPPN----------IDYVR 166
Query: 176 SGGGGFMDTAPHGIDSLFWLTESEPIRVYAD----IGPKIWGFQVDDIGTALI--EFKNG 229
+ GG FMD + H D ++ SE VYA + P ++ DI TA+I F+NG
Sbjct: 167 TSGGLFMDMSIHDFDMARYIMGSEVTEVYAKGAALVNPSF--AELGDIDTAVITLTFENG 224
Query: 230 VIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRSAYP--------DFTVYQDKTEKIF 281
+AV+ N + YG + + + G G ++ P DF V +DK F
Sbjct: 225 AMAVID----NSRQAVYGYDQRVEVFGTKGSAAADNSRPTTVEVSTADF-VMKDKPHFFF 279
Query: 282 WER--ADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVE 334
ER E + F +AI ++E P TG D L+ + AA +S G V +E
Sbjct: 280 LERYKDSYEEEILRFAEAIGTNQETPCTGNDGLQAGRIARAAQQSLAFGMPVSIE 334
>gb|AAK43149.1| Dehydrogenase, putative [Sulfolobus solfataricus]
Length = 371
Score = 120 bits (297), Expect = 3e-26
Identities = 99/354 (27%), Positives = 168/354 (46%), Gaps = 31/354 (8%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
+V G I H AL+ + KLVA+ +A+ +YG +Y +++
Sbjct: 24 VVGLGSIGKTHVKALKDLE--KETEFVKLVAVVDQ--IKAIAEKIGSEYGTPYYTTIDEV 79
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
LR+ V+ + IA +Y H AI A E GK +++EKP+A TL +E+V A + VKL
Sbjct: 80 LRNSEVDVISIATPSYLHAPQAILAIEYGKHVIVEKPMATTLAGAREMVSRAERNEVKLG 139
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEG------IDTSWFFDIK 174
V F R+ +++ K I K E+G+ IY I +K ++G I SW
Sbjct: 140 VIFQERYAPDIRRLKNDILK-ELGR---IYLIESELKWYRDMKGYYKRDEIARSWRGMWN 195
Query: 175 KSGGGGFMDTAPHGIDSLFWLT-ESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAV 233
GGG + H ID + WL E E + + D G +V+D A++ +KNG +
Sbjct: 196 TEGGGVMTNQGIHTIDLMIWLNGEVEEVSGFVD-NLTHDGIEVEDTAVAIMRYKNGALGT 254
Query: 234 LTAGWA-NPKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEK----IFWERADV- 287
++ + P Y Y K + G +GF++I + K E+ + +++ +
Sbjct: 255 ISQTVSMKPTTYQYR---KIRVNGSNGFVEITDGSLSTVAIEGKIEESKSSVEYKKETIA 311
Query: 288 ------EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
+ ++ F+ A+ +D + PI G++ +K+L V+ A Y SS + VK+ L
Sbjct: 312 QPGNLHKELLRDFLRALSEDNDFPINGKEGMKSLEVIKAVYLSSVNRQVVKLPL 365
>pir||A75025 NADH-dependent dyhydrogenase related protein PAB1138 - Pyrococcus
abyssi (strain Orsay) >gi|5459153|emb|CAB50639.1|
(AJ248288) NADH-dependent DYHYDROGENASE RELATED PROTEIN
[Pyrococcus abyssi]
Length = 341
Score = 116 bits (287), Expect = 5e-25
Identities = 100/348 (28%), Positives = 165/348 (46%), Gaps = 40/348 (11%)
Query: 6 VISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDES 65
+ + AH AL+ TI AK+VA+ + A+ K+ AK + ++ L ++
Sbjct: 15 IFNLAHKPALKSLRTI-----AKVVAVMD--IDEEAARKAGKELNAKVFTSLDEFL-EQD 66
Query: 66 VEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNP 125
+ V I TY H E+AI A + GK +++EKPIALT+E+ ++++K A +KL V
Sbjct: 67 MNVVEILTPTYTHAELAIEALKAGKHVIVEKPIALTVEEAEKMIKEAENQELKLFVGHVR 126
Query: 126 RFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTA 185
RF + + K++I+ I ++ +++ P W++D KS GG +D
Sbjct: 127 RFDKRWIQIKDIIKSRNILPMQIRKIEVQHLPFPA------DYWYWDESKS-GGVIVDLG 179
Query: 186 PHGIDSLFWLTESEPIRVYADIGPKIWG----FQVDDIGTALIEFKNGVIAVLTAGWANP 241
H D L W ESEPI V+A +G I G + D I+F+ G + W+ P
Sbjct: 180 VHVTDFLRWFFESEPIEVFA-VGKAIRGEARVNKTHDHVVMFIKFEGGKTGIGEVSWSYP 238
Query: 242 KGYPYGLEIKYY-IVGDDGFLD-----------IRSAY--PDFTVYQDKTEKIFWERADV 287
YG+ + I+G +G + ++S++ P F+ + F
Sbjct: 239 MPPKYGVFYHHLDIIGKNGRIRYTPMDTPVVGVVKSSFEMPRFSPMLSTFPQAF------ 292
Query: 288 EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
E + F + I+ EP +T +DAL L + A ES K G+ VKVE+
Sbjct: 293 EAELRHFFECIKSSCEPVVTAQDALIALKIAEKAKESIKKGEPVKVEV 340
>pir||S70672 dehydrogenase homolog - Bordetella pertussis
>gi|992971|emb|CAA62245.1| (X90711) gene referred to as
bplA in Mol. Microbiol. 19:37-52(1996) [Bordetella
pertussis] >gi|3451515|emb|CAA07671.1| (AJ007747)
putative oxidoreductase [Bordetella bronchiseptica]
>gi|1589221|prf||2210367C bplA gene [Bordetella
pertussis]
Length = 350
Score = 113 bits (280), Expect = 3e-24
Identities = 97/353 (27%), Positives = 160/353 (44%), Gaps = 33/353 (9%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+RFG++ A + RA+LV I D L EA GA+ + +L
Sbjct: 11 IRFGLVGCGRISKNHIGAIAQHGDRAELVEIC-DTNPEALQAAEAAT-GARPFSSLSDML 68
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
+ +A+ +A + H AI A+ G+ ++ EKP+A EDGK +VKA +AGV+L V
Sbjct: 69 AQGNADALVLATPSGLHPWQAIEVAQAGRHVVSEKPMATRWEDGKRMVKACDEAGVRLFV 128
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGF 181
R LQ K+ IE+G G++ Y+ T++ + P E D + + + GG F
Sbjct: 129 VKQNRRNATLQLVKKAIEQGRFGRI-YMVTVNVFWTRPQ--EYYDAARWRGKWEWDGGAF 185
Query: 182 MDTAPHGIDSLFWLTESEPIR-VYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWAN 240
M+ A H +D L WL P+ VYA + +D G A + +++G + +
Sbjct: 186 MNQASHYVDLLDWLV--GPVESVYAYTATLARRIEAEDTGVAALRWRHGAMGSINVTMLT 243
Query: 241 PKGYPYGLEIKYYIVGDDGFLDI-------------RSAYPDFTVYQDKTEKIFWERADV 287
YP LE I+G+ G + + +PD DK + +E V
Sbjct: 244 ---YPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPD----DDKIREANYETTSV 296
Query: 288 EGI-----VNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVEL 335
G + I+ ++ D EP G + L++LA++ A Y S++ G + + L
Sbjct: 297 YGFGHPLYYDNVINCLRGDCEPETDGREGLQSLALLTAIYRSARDGVRIPLPL 349
>pir||B72359 lipopolysaccharide biosynthesis protein BplA - Thermotoga maritima
(strain MSB8) >gi|4981103|gb|AAD35670.1|AE001733_7
(AE001733) lipopolysaccharide biosynthesis protein BplA
[Thermotoga maritima]
Length = 360
Score = 111 bits (276), Expect = 9e-24
Identities = 82/299 (27%), Positives = 141/299 (46%), Gaps = 38/299 (12%)
Query: 56 DYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKA 115
+Y +LL+ E V+ + IA E+ +H ++ + A E GK +L+EKP+AL+ + E+V+ +++
Sbjct: 62 NYRELLKREDVDVISIATESGKHYQITMEALEAGKHVLVEKPMALSTKHMNEMVELSKQK 121
Query: 116 GVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKK 175
+KL V F RF P+Q+ ++ ++ G GK+ Y + + + + SW +
Sbjct: 122 NLKLGVFFQNRFNPPVQEVRKKLDSGAFGKIFYASVAVRWNRNEDYYK--QASW-RGTWE 178
Query: 176 SGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGF-QVDDIGTALIEFKNGVIAVL 234
GG M+ + H ID L W E +Y I + + +D G A+++FK G ++
Sbjct: 179 MDGGVLMNQSTHAIDLLQWFLGGEIEEIYGHIANTNHPYIEAEDEGFAIVKFKGGKTGLI 238
Query: 235 TAGWANPKGYPYGLEIKYYIVGDDGFLDIRSA--------------------YPD-FTVY 273
A +P LE I G+ G + I PD TVY
Sbjct: 239 E---ATSNVFPRNLEETLAIFGEKGTVVIGGIAVNRILTWRFEGEEGHPFMNLPDPDTVY 295
Query: 274 QDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVK 332
D + ++ + F +A+ D++P I+GED K + +VL Y S G+ VK
Sbjct: 296 GDSHKYVYRD----------FYEAVTNDRKPYISGEDGKKAVEIVLGIYRSFLEGRPVK 344
>gb|AAC23913.1| (AF039207) NADH-dependent dehydrogenase homolog [Listeria
monocytogenes]
Length = 358
Score = 109 bits (270), Expect = 4e-23
Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 43/324 (13%)
Query: 42 AKIEAKKYG---AKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPI 98
A+ AK++G A Y +Y +LL+D+S++ +++ H E++I A E GK ++ EKP+
Sbjct: 41 AEAAAKEFGGENASVYTNYVELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPM 100
Query: 99 ALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKP 158
A T + K +++AA + G KL + + RF + ++ E GE+G + Y K
Sbjct: 101 AKTTAEAKSMIEAAERTGKKLTIGYQNRFRKDSDYLHQVCENGELGDI-------YYAKA 153
Query: 159 PMFLEGIDTSW--FFDIKKSGGGGFMDTAPHGIDSLFWLTES-EPIRVYADIGPKI---- 211
+W F D + GGG +D H +D W+ ++ +P V + K+
Sbjct: 154 KAIRRRAVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKE 213
Query: 212 -----WG------FQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGF 260
WG F V+D I +NG VL A WA G E + + G +G
Sbjct: 214 NAANAWGSWDPNKFTVEDSAFGFITMENGATIVLEASWA-LNTLDVG-EARTSLSGTEGG 271
Query: 261 LDIR-----SAYPDFTVYQDKTE------KIFWERADVEGIVNA--FIDAIQQDKEPPIT 307
D+ + +Y+ K + + D ++ A ++ AI+++ +P +
Sbjct: 272 ADMEDGLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAGQWLGAIEKNTDPVVK 331
Query: 308 GEDALKNLAVVLAAYESSKTGKAV 331
A+ ++ A YESSKTG+ V
Sbjct: 332 PGQAIVVTQILEAIYESSKTGQPV 355
>pir||D72381 dehydrogenase - Thermotoga maritima (strain MSB8)
>gi|4980919|gb|AAD35499.1|AE001720_13 (AE001720)
dehydrogenase [Thermotoga maritima]
Length = 334
Score = 105 bits (259), Expect = 9e-22
Identities = 92/346 (26%), Positives = 151/346 (43%), Gaps = 29/346 (8%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R GVI + +A ++ A L AIS D L +++ K K Y+D +L+
Sbjct: 1 MRIGVIGLGRIGTI-HAENLKMIDDAILYAIS-DVREDRLREMKEKLGVEKAYKDPHELI 58
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
D +V+AV + T H E+ I A+ K + EKP++L L D +++ +KA V L
Sbjct: 59 EDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFT 118
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGF 181
FN RF + +K KE +E G IGK + S PP D + GG F
Sbjct: 119 GFNRRFDRNFKKLKEAVENGTIGKPHVLRITSRDPAPPP----------LDYIRVSGGIF 168
Query: 182 MDTAPHGIDSLFWLTESEPIRVYAD----IGPKIWGFQVDDIGTALIEFKNGVIAVLTAG 237
+D H D ++ E V+AD + +I D ++ FK+G + V+
Sbjct: 169 LDMTIHDFDMARYIMGEEVEEVFADGSVLVDEEIGKAGDVDTAVVVLRFKSGALGVID-- 226
Query: 238 WANPKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEK-------IFWERADVEGI 290
N + YG + + + G G + + V D+ F ER +
Sbjct: 227 --NSRRAVYGYDQRIEVFGSKGRIFADNVRETTVVLTDEQGDRGSRYLYFFLERYRDSYL 284
Query: 291 --VNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVE 334
+ FI ++ + P ++GED L + AA +S + ++VK+E
Sbjct: 285 EELKTFIKNVKSGEPPAVSGEDGKMALLLGYAAKKSLEEKRSVKLE 330
>pir||B75475 glucose-fructose oxidoreductase - Deinococcus radiodurans (strain
R1) >gi|6458511|gb|AAF10376.1|AE001934_7 (AE001934)
glucose-fructose oxidoreductase [Deinococcus
radiodurans]
Length = 398
Score = 104 bits (257), Expect = 2e-21
Identities = 77/290 (26%), Positives = 142/290 (48%), Gaps = 23/290 (7%)
Query: 54 YQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAAR 113
Y D+EKL + VEAVYI + H+E RAA+ GK +L EKP+++ +D + +V A R
Sbjct: 100 YDDFEKLAGRDDVEAVYIVLPNSLHREYVERAAKMGKHVLCEKPLSVNEQDAQAMVDACR 159
Query: 114 KAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDI 173
A V LM + ++T A++ ++ G++GK++ + +I + E + W +
Sbjct: 160 AANVLLMTAYRCQYTPEHWAARDAVQGGKLGKVKLLDSIH------VQSEDDPSVWRLKL 213
Query: 174 KKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADI----GPKIWGFQVDDIGTALIEFKNG 229
+GGG D + ++ + ++ EP V+A + G +G +V++ +A++ F G
Sbjct: 214 DLAGGGPLPDVGLYSVNIIRFVLGQEPEWVFAALHQPEGDPRFG-EVEESVSAMLGFPGG 272
Query: 230 VIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRSAYP------DFTVYQDKTEKIFWE 283
VIA + + K ++G++G L + A+P + T F E
Sbjct: 273 VIANVLTSYGALK------TTTLRVMGEEGSLLMDPAFPYDGLGLEITTDDGTFSPSFPE 326
Query: 284 RADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKV 333
+ F ++ + P GE+ + + V+ A YES++TGK V++
Sbjct: 327 YDQFSREFDHFAQCVRGGQTPWTPGEEGVADHRVMDAIYESARTGKRVEL 376
>dbj|BAB07562.1| (AP001520) oxidoreductase [Bacillus halodurans]
Length = 334
Score = 102 bits (253), Expect = 4e-21
Identities = 96/342 (28%), Positives = 155/342 (45%), Gaps = 40/342 (11%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISG----DGANSGLAKIEAKKYGAKFYQDY 57
VR+G++ A + I+ A++VA+S + AN + + K Y Y
Sbjct: 5 VRWGILGTAGIAKKQLIPAIKRASNAEVVAVSSRNDMEKANCYADECDIPKR----YARY 60
Query: 58 EKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGV 117
E LL D ++AVYI + + H A +AAE GK +L EKP ALT + KE+V A GV
Sbjct: 61 EDLLNDPDIDAVYIPLPNHLHLTWAKKAAEHGKHVLCEKPAALTAAEAKEMVDACAAHGV 120
Query: 118 KLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSG 177
M F +F + K +I+ G+IG++ I + + P ++ + ++ G
Sbjct: 121 VFMEAFMYQFHPQHGEVKRLIDSGKIGEVRLIRSNFSFQLP------LEANNIRLNREMG 174
Query: 178 GGGFMDTAPHGIDSLFWLTESEPIRVYAD--IGPKIWGFQVDDIGTALIEFKNGVIAVLT 235
GG D + I +LT EP+ Y + P++ VD T +++ + GV +V T
Sbjct: 175 GGSLYDVGCYCIHLTRYLTGKEPVHAYGTGYLHPEL---GVDTSFTGVLQMEGGVTSVFT 231
Query: 236 AGWANPKGYPYGLEIKYYIVGDDGFLDIRSAY-PDFTVYQDKTEKIFWERAD-------V 287
+ + P + Y +VG +G + + A+ PD +QD T I +D V
Sbjct: 232 SSFEQP------ADDSYEVVGTEGTIIVPYAFRPD--KHQDGTGVIIVRTSDGREETLSV 283
Query: 288 EG-----IVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYES 324
+G V DAI GE+ + N++VV A S
Sbjct: 284 QGDQYRLQVEHVSDAILNGTPLLYPGEETVNNMSVVEACLHS 325
>emb|CAB60174.1| (AL132824) putative dehydrogenase [Streptomyces coelicolor]
Length = 337
Score = 102 bits (252), Expect = 6e-21
Identities = 81/278 (29%), Positives = 118/278 (42%), Gaps = 20/278 (7%)
Query: 66 VEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNP 125
V+AV I T H E+ RAA G + EKPIAL L + + AG L + F
Sbjct: 61 VDAVVITTATPAHAELIGRAARSGLPVFCEKPIALDLPGTLQAIAEVEAAGTVLQMGFQR 120
Query: 126 RFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTA 185
RF A+E + G +G+L + ++ PP D GG + DT
Sbjct: 121 RFDTGYTGAREAVRSGRLGRLHTVRAVTSDQTPPP----------ADYLPQSGGLYRDTL 170
Query: 186 PHGIDSLFWLTESEPIRVYA---DIGPKIWGFQVD-DIGTALIEFKNGVIAVLTAGWANP 241
H D L W+T E + VYA D GP ++ D D G L+ +G +A TA N
Sbjct: 171 IHDFDVLRWVTGREVVDVYAAGSDAGPPMFRAADDVDTGAVLLTLDDGTLATATAARLNG 230
Query: 242 KGYPYGL----EIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWER--ADVEGIVNAFI 295
GY + E+ +VG D I S P DK F ER E + F+
Sbjct: 231 AGYDVRMELAGELDQIVVGLDDRTPIASTEPTGPPAADKPWTGFVERFGPAYEAELTTFV 290
Query: 296 DAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKV 333
++ ++ P G +AL+ L + A S + + V++
Sbjct: 291 QVVRGERANPCDGREALQALRIAEACDVSRRERRPVRL 328
>sp|P40332|YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN DEGA-NPRB INTERGENIC REGION
>gi|7429794|pir||B69838 myo-inositol 2-dehydrogenase
homolog yisS - Bacillus subtilis
>gi|1934841|emb|CAB07962.1| (Z93940) unknown [Bacillus
subtilis] >gi|2145385|emb|CAA70648.1| (Y09476) YisS
[Bacillus subtilis] >gi|2633420|emb|CAB12924.1| (Z99109)
alternate gene name: yuxD, yucG~similar to myo-inositol
2-dehydrogenase [Bacillus subtilis]
Length = 342
Score = 102 bits (251), Expect = 8e-21
Identities = 97/326 (29%), Positives = 152/326 (45%), Gaps = 37/326 (11%)
Query: 27 AKLVAISGDGANSGLAKIEAKKYGA-KFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRA 85
AKLV + GD G A+ A++ G K+ +D ++L D ++AV I T H ++ I+A
Sbjct: 30 AKLVCV-GDPLK-GRAEQVARELGIEKWSEDPYEVLEDPGIDAVIIVTPTSTHGDMIIKA 87
Query: 86 AEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGK 145
AE GK I +EKP+ L+LE+ K + ++ GV V F RF AK I+ GEIGK
Sbjct: 88 AENGKQIFVEKPLTLSLEESKAASEKVKETGVICQVGFMRRFDPAYADAKRRIDAGEIGK 147
Query: 146 LEYI--YTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRV 203
Y +T + P F+ K GG F+D + H D +L +E V
Sbjct: 148 PIYYKGFTRDQGAPPAEFI------------KHSGGIFIDCSIHDYDIARYLLGAEITSV 195
Query: 204 --YADIGPKIWGFQVDDIGTAL--IEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDG 259
+ I + Q D+ AL IEF +G + A + PYG +I+ ++G +G
Sbjct: 196 SGHGRILNNPFMEQYGDVDQALTYIEFDSGAAGDVEAS----RTSPYGHDIRAEVIGTEG 251
Query: 260 FLDIRS-AYPDFTVYQDKTEKI---------FWERADVEGIVNAFIDAIQQDKEPPITGE 309
+ I + + T+ K F E +E + F + ++ K P +T
Sbjct: 252 SIFIGTLRHQHVTILSAKGSSFDIIPDFQTRFHEAYCLE--LQHFAECVRNGKTPIVTDI 309
Query: 310 DALKNLAVVLAAYESSKTGKAVKVEL 335
DA NL V +AA S + G V++++
Sbjct: 310 DATINLEVGIAATNSFRNGMPVQLDV 335
>gb|AAD41367.1|AF151698_4 (AF151698) putative oxidoreductase [Agrobacterium tumefaciens]
Length = 335
Score = 99.1 bits (243), Expect = 7e-20
Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 35/345 (10%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYG-AKFYQDYEKL 60
+R+GV+ A A I+++R ++VAI+ A AK ++G A+ Y YE L
Sbjct: 5 IRWGVLGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAK--AKEMTARFGIARSYGSYEDL 62
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
L D ++A+Y + + H + I+A E+GK +L EKPIAL +E+ A + A + +
Sbjct: 63 LADPEIDAIYNPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVA 122
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYV--KPPMFLEGIDTSWFFDIKKSGG 178
F R +KA +I +G +G++ I TI Y P +D GG
Sbjct: 123 EAFMVRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRNQVDI---------GG 173
Query: 179 GGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGW 238
GG D + I++ +L ++EP+R A + + F D + + L+ F G T
Sbjct: 174 GGLFDVGCYAINTARFLFDAEPLRAIA-LMERDPVFGTDRLTSGLLAFPEGKQLAFTC-- 230
Query: 239 ANPKGYPYGLEIKYYIVGDDGFLDIRSAY------PDFTVYQDKTEKIFWERADV----- 287
L K ++G G L+I + P ++ D + R ++
Sbjct: 231 ----STQLSLTQKVTVLGTRGRLEIPIPFNAPADEPTVLIFDDGRDLAGGGREEIMIGPV 286
Query: 288 ---EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGK 329
+AF +A+ K DA+ N + A + S+ +G+
Sbjct: 287 DQYREQADAFAEAVLSGKPLETDLGDAIANTKAIDALFRSAASGR 331
>emb|CAB02496.1| (Z80356) glucose-fructose oxidoreductase [Zymomonas mobilis]
Length = 433
Score = 97.1 bits (238), Expect = 3e-19
Identities = 78/316 (24%), Positives = 144/316 (44%), Gaps = 28/316 (8%)
Query: 38 NSGLAKIEAKKYGAK-----FYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDI 92
N+ AKI A +YG Y +++K+ +D ++AVYI + H E AIRA + GK +
Sbjct: 118 NAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHV 177
Query: 93 LLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTI 152
+ EKP+A ++ D + ++ AA+ A KLM+ + + + A ++I + ++GKL + T
Sbjct: 178 MCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTD 237
Query: 153 SEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPI--RVYADIGPK 210
+ V M W + +GGG MD +G++ +L EPI R Y P
Sbjct: 238 NSDV---MDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPN 294
Query: 211 IWGF-QVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFL--DIRSAY 267
F +V+D + F++G ++ Y ++ + GD L D + Y
Sbjct: 295 DERFVEVEDRIIWQMRFRSGALS------HGASSYSTTTTSRFSVQGDKAVLLMDPATGY 348
Query: 268 ---------PDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVV 318
P + I ++ +A+ +K GE+ ++++ ++
Sbjct: 349 YQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLI 408
Query: 319 LAAYESSKTGKAVKVE 334
A YE+++TG+ V +
Sbjct: 409 QAIYEAARTGRPVNTD 424
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase >gi|2098324|pdb|1OFG|B
Chain B, Glucose-Fructose Oxidoreductase
>gi|2098325|pdb|1OFG|C Chain C, Glucose-Fructose
Oxidoreductase >gi|2098326|pdb|1OFG|D Chain D,
Glucose-Fructose Oxidoreductase >gi|2098327|pdb|1OFG|E
Chain E, Glucose-Fructose Oxidoreductase
>gi|2098328|pdb|1OFG|F Chain F, Glucose-Fructose
Oxidoreductase
Length = 381
Score = 97.1 bits (238), Expect = 3e-19
Identities = 78/316 (24%), Positives = 144/316 (44%), Gaps = 28/316 (8%)
Query: 38 NSGLAKIEAKKYGAK-----FYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDI 92
N+ AKI A +YG Y +++K+ +D ++AVYI + H E AIRA + GK +
Sbjct: 66 NAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHV 125
Query: 93 LLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTI 152
+ EKP+A ++ D + ++ AA+ A KLM+ + + + A ++I + ++GKL + T
Sbjct: 126 MCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTD 185
Query: 153 SEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPI--RVYADIGPK 210
+ V M W + +GGG MD +G++ +L EPI R Y P
Sbjct: 186 NSDV---MDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPN 242
Query: 211 IWGF-QVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFL--DIRSAY 267
F +V+D + F++G ++ Y ++ + GD L D + Y
Sbjct: 243 DERFVEVEDRIIWQMRFRSGALS------HGASSYSTTTTSRFSVQGDKAVLLMDPATGY 296
Query: 268 ---------PDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVV 318
P + I ++ +A+ +K GE+ ++++ ++
Sbjct: 297 YQNLISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLI 356
Query: 319 LAAYESSKTGKAVKVE 334
A YE+++TG+ V +
Sbjct: 357 QAIYEAARTGRPVNTD 372
>sp|Q07982|GFO_ZYMMO GLUCOSE--FRUCTOSE OXIDOREDUCTASE PRECURSOR (GFOR)
>gi|95542|pir||A42289 glucose-fructose oxidoreductase
(EC 1.1.-.-) precursor - Zymomonas mobilis
>gi|155588|gb|AAA27690.1| (M97379) glucose-fructose
oxidoreductase [Zymomonas mobilis]
Length = 439
Score = 96.7 bits (237), Expect = 3e-19
Identities = 77/312 (24%), Positives = 142/312 (44%), Gaps = 29/312 (9%)
Query: 42 AKIEAKKYGAK-----FYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEK 96
AKI A +YG Y +++K+ +D ++AVYI + H E AIR+ + GK ++ EK
Sbjct: 121 AKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRSFKAGKHVMCEK 180
Query: 97 PIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYV 156
P+A ++ D + ++ AA+ A KLM+ + + + A ++I + ++GKL + T + V
Sbjct: 181 PMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDV 240
Query: 157 KPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPI--RVYADIGPKIWGF 214
L + SGGG MD +G++ +L EPI R Y P F
Sbjct: 241 MDQNDLHSSGVC----VVNSGGGSLMDIGIYGLNGTRYLLGEEPIEVRAYTYSDPNDERF 296
Query: 215 -QVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFL--DIRSAY---- 267
+V+D + F++G ++ Y ++ + GD L D + Y
Sbjct: 297 VEVEDRIIWQMRFRSGALS------HGASSYSTTTTSRFSVQGDKAVLLMDPATGYYQNL 350
Query: 268 -----PDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAY 322
P + I ++ +A+ +K GE+ ++++ ++ A Y
Sbjct: 351 ISVQTPGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIY 410
Query: 323 ESSKTGKAVKVE 334
E+++TG+AV +
Sbjct: 411 EAARTGRAVNTD 422
>sp|Q44258|CBAC_ALCSB 1-CARBOXY-3-CHLORO-3,4-DIHYDROXYCYCLO HEXA-1,5-DIENE DEHYDROGENASE
>gi|2073552|gb|AAC45718.1| (U18133)
1-carboxy-3-chloro-3,4-dihydroxycyclohexa-1,5-diene
dehydrogenase [Comamonas testosteroni]
Length = 397
Score = 96.3 bits (236), Expect = 4e-19
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 12/242 (4%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R GV+ L T +RR +LVA S D L + +A A + D E L
Sbjct: 1 MRIGVVGLGKAFMLMLP-TFLMDRRVQLVAAS-DTDPLSLRQFKADFPAAAVHGDIESLC 58
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
++ VE VYI H A A GK +L+EKP+A+TLED + A++AG L+V
Sbjct: 59 KNPDVEVVYIGTPHQFHAVHAEIALNAGKHVLVEKPMAVTLEDCCRMNACAQRAGKYLIV 118
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTI--SEYVKPPMFLEGIDTSWFFDIKKSGGG 179
+ F P+ +AKE+I+ G G++ +I+++ ++++ P E ++T GGG
Sbjct: 119 GHSHSFDHPISRAKELIDSGRYGRVRFIHSMNYTDFLYRPRRAEELNTD-------LGGG 171
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLT-AGW 238
+ A H +D + L + + V + +G + + +ALI+F NGV A +T +G+
Sbjct: 172 VVFNQASHQLDVIRLLAQGRVVDVSSYLGRWDAARRTEGAYSALIKFDNGVAANVTYSGY 231
Query: 239 AN 240
A+
Sbjct: 232 AH 233
>gb|AAK43115.1| Dehydrogenase, putative [Sulfolobus solfataricus]
Length = 319
Score = 96.0 bits (235), Expect = 6e-19
Identities = 84/313 (26%), Positives = 148/313 (46%), Gaps = 22/313 (7%)
Query: 21 IRANRRAKLVAISGDGANSGLAKIEAKKYGAK-FYQDYEKLLRDESVEAVYIAIETYRHK 79
+RA R + N A+ K++ A+ ++ YE +++ +V+ V + + +H
Sbjct: 16 LRAMRNISGIEYYVFSRNEEKARECMKEFNAEGYFTRYEDVIKS-NVDIVDLLVSHDQHY 74
Query: 80 EVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIE 139
+ + A + GK ++LEKPIA T+E+ ++ ++ K MV F ++KAKE++
Sbjct: 75 PMGVMAMKAGKHLMLEKPIARTIEEAMGLINTSKDTKRKFMVLEQFYFESSVRKAKELLP 134
Query: 140 KGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWL-TES 198
+ +G L I S ++ P W + +K GGG +D H ID+L L E
Sbjct: 135 R--LGNLSLIIVRSIHLYQP-------KGWRREKEKMGGGALIDGGVHFIDTLLNLGGEY 185
Query: 199 EPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYY----- 253
E +R G G + +D+ A + F+ G + +L W P P + Y
Sbjct: 186 ESVR--GVCGKYFSGIEGEDLTLATLRFRKGHLGLLMYSWTTPNP-PKVPAFEIYGENGS 242
Query: 254 IVGDDGFLDIRSAYPDFTVYQD-KTEKIFWERAD-VEGIVNAFIDAIQQDKEPPITGEDA 311
I+ D + AY D + D K E+I E+ + +E + F+ A++ + E P+ E A
Sbjct: 243 IIEDPNTRVMGKAYGDLILNVDGKEERIEVEKVNPIEEEIRGFVKAVKNNTEVPMPPEIA 302
Query: 312 LKNLAVVLAAYES 324
L++L VL Y+S
Sbjct: 303 LRDLKAVLDIYKS 315
>emb|CAB88961.1| (AL353864) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 358
Score = 95.2 bits (233), Expect = 1e-18
Identities = 77/282 (27%), Positives = 125/282 (44%), Gaps = 21/282 (7%)
Query: 42 AKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALT 101
AK A+++GA+ E + V+ V IA T H ++ + A E G + EKP+A T
Sbjct: 62 AKAAAERFGAEVADSPEAVFA-AGVDGVVIAAATDAHPDLILAAVEAGVPVFCEKPVART 120
Query: 102 LEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMF 161
+ +G E++KA V + + + RF A+ + GE+G L + + + PP
Sbjct: 121 MAEGVEVLKALAGRDVPVQIGYQRRFDTGFAAARAAVRSGELGPLHTVRSTTLDPAPPPA 180
Query: 162 LEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGF--QVDDI 219
+ GG F D + H DS+ W+T E VYA G + + + D
Sbjct: 181 A----------YVAASGGIFRDCSVHDFDSIRWVTGREVGEVYAVGGNRGADYIREAGDA 230
Query: 220 GT--ALIEFKNGVIAVLTAGWANPKGYPYGLEIKYY----IVGDDGFLDIRSAYPDFTVY 273
T A++ +G +AV++ N +GY +EI + VG + L +RS P T
Sbjct: 231 DTTGAVLTLDDGTVAVVSNSRHNARGYDVRMEIHGFDDSIAVGLEDRLPLRSVEPGVTFP 290
Query: 274 QDKTEKIFWER--ADVEGIVNAFIDAIQQDKEPPITGEDALK 313
F +R A + AF + + + P T EDAL+
Sbjct: 291 AGTPHDFFMDRFTAAYRAELTAFTEVVAGARPSPCTVEDALE 332
>gb|AAC01706.1| (AF040570) unknown [Amycolatopsis mediterranei]
Length = 342
Score = 94.4 bits (231), Expect = 2e-18
Identities = 82/304 (26%), Positives = 138/304 (44%), Gaps = 22/304 (7%)
Query: 37 ANSGLAKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEK 96
++ G ++ A ++GAK E+ L + +AV I T H E+A+ A G ++ EK
Sbjct: 48 SDDGRSRELAAEFGAKAAGSLEEAL--DGADAVDICTPTASHHEIALTAIAAGVGVVCEK 105
Query: 97 PIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEY-IYTISEY 155
P+A + E+ +EIV AA +AGV+L + RF P + E++ G +G+ ++ S Y
Sbjct: 106 PLAASAEEAEEIVTAAERAGVRLYAAHDVRFAAPYARLHELVASGRLGEGALGRFSFSAY 165
Query: 156 VKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYA----DIGPKI 211
P W GG D HG D W+ + +RV+A DI
Sbjct: 166 HPRP---------WTGHASARSGGILTDQLLHGADLAHWVF-GDVVRVHACYQGDIATPA 215
Query: 212 WGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRSAYP-DF 270
V GTA++ +G I+ + + W P + + +++ G G + S +P +
Sbjct: 216 PEGAV-ATGTAVLTHASGAISQVVSRWTATPRPP--VRVAFHVSGTGGSVSYDSEWPQEV 272
Query: 271 TVYQDKTEKIFWERADV-EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGK 329
V + V + + F A EP I +DAL + ++ AA ES+ TG+
Sbjct: 273 RVVDGGAGNFAYGGPSVFDTEMREFATAFAGGPEPRIGAKDALAAVRIIHAAAESAWTGR 332
Query: 330 AVKV 333
AV++
Sbjct: 333 AVEL 336
>gb|AAD45293.1|AF156256_1 (AF156256) putative dehydrogenase [Vibrio anguillarum]
Length = 318
Score = 94.4 bits (231), Expect = 2e-18
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 14/260 (5%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R V+ + + + + +LVA+ + N + ++ + KYG Y + LL
Sbjct: 7 IRIAVVGCGRISKNHFGSIEQLDSEYELVAVCDN--NPEVLELHSNKYGVPGYHSIDDLL 64
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
++++ V + + H I+AA+ G ++ EKP+A EDG +VKA AGV+L V
Sbjct: 65 ASQTLDIVTLCTPSGIHAPQTIKAAKAGVHVITEKPMATKWEDGLAMVKACDDAGVRLFV 124
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTS--WFFDIKKSGGG 179
R LQ K + + GK+ ++ + +P + + S W D GG
Sbjct: 125 VKQNRRNSTLQLLKRAVTEKRFGKIHMVHLNVFWTRPQEYYDRAAWSGTWHMD-----GG 179
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWA 239
FM+ A H +D L WL PI + +V+D G I+++NG + +
Sbjct: 180 AFMNQATHYVDLLHWLV--GPIETIHAMTSTHRDIEVEDTGVVNIKWRNGALGSMAVTMC 237
Query: 240 NPKGYPYGLEIKYYIVGDDG 259
YP LE I G+ G
Sbjct: 238 T---YPNNLEGSITIFGEKG 254
>dbj|BAB05884.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 348
Score = 92.4 bits (226), Expect = 6e-18
Identities = 79/320 (24%), Positives = 152/320 (46%), Gaps = 46/320 (14%)
Query: 42 AKIEAKKYGAKF-YQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIAL 100
A+ A+++ + Y D +++++ ++AV I H+E+ I A G +L EKP A+
Sbjct: 45 AQAAAEQFSIPYVYNDASRMMQEVELDAVSICTPNAFHRELTIEALHAGCHVLCEKPPAI 104
Query: 101 TLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPM 160
T+ED K++ AA++ G L F+ R + ++ K +++GE+G++ ++ +
Sbjct: 105 TVEDAKQMEAAAKETGNLLTYGFHYRHSPEVETLKRFVDEGELGEIYHVRV------QAI 158
Query: 161 FLEGIDTSWFFDIKK-SGGGGFMDTAPHGID-SLFWLTESEPIRVYADIGPKI------- 211
GI F K+ GGG +D H +D +L+ + EP + KI
Sbjct: 159 RRRGIPGWGVFTNKELQGGGPLIDIGVHMLDTALYVMGFPEPATILGQTHRKIGTKEGVG 218
Query: 212 ----WG---FQVDDIGTALIEFKNGV-IAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDI 263
W F ++D+ +I FKNG + + TA AN K + + + ++ GD G D+
Sbjct: 219 LLGEWNWQQFSIEDMAVGMITFKNGASLTIETAFAANVKEQDH-MNVSFF--GDKGGADL 275
Query: 264 RSAYPDFTVYQDKTEKIFWERADV-----------EGIVNAFIDAIQQDKEPPITGEDAL 312
+P ++YQ+K + D+ E + F+D + ++P T E +
Sbjct: 276 ---FP-LSIYQEKHRTLL----DITPVYLPTYNHHEREIKHFVDCCFRLEQPLATPEQGI 327
Query: 313 KNLAVVLAAYESSKTGKAVK 332
++ Y+S+++GKA++
Sbjct: 328 VIQRLIQGLYQSAESGKAIQ 347
>gb|AAK43113.1| Dehydrogenase, putative [Sulfolobus solfataricus]
Length = 363
Score = 92.1 bits (225), Expect = 9e-18
Identities = 81/324 (25%), Positives = 152/324 (46%), Gaps = 51/324 (15%)
Query: 46 AKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDG 105
++K G K Y DY+++LR+E+ + V +A+ H +A+ A ++ +EKP+A + ++
Sbjct: 45 SQKTGCKGYLDYKEMLRNENPDLVLVAVPHSLHAIIALDAINNDANVYVEKPMATSFQEA 104
Query: 106 KEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGI 165
+V+A+RK L+V RF + AK++I GE+GK+ ++ Y++ GI
Sbjct: 105 LTLVEASRKRNKILVVGHENRFNPAMLIAKKLIRGGEVGKIYHMRGF--YIRQ----RGI 158
Query: 166 DTSWFFDIKK--SGGGGFMDTAPHGIDSLFWLTE----------------SEPIRVYADI 207
TS F IKK + GG D H ID L +L++ + + A
Sbjct: 159 PTSPTF-IKKDLAKGGAVFDIGTHIIDLLLFLSDFPTPKSVTGKTYNAFSEDKTKFSAYP 217
Query: 208 GPKIWGF--QVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRS 265
P + F +V+D G+A ++ + + A + WA+ Y +++ I+GD+G + I +
Sbjct: 218 SPNLPNFKVEVEDFGSAFLKLGDEISAYVEVSWAS---YIKENKMEVVILGDNGGIHIDN 274
Query: 266 AYPDF--------------TVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDA 311
+F T + + W R +E I F + P + E
Sbjct: 275 GVLNFMRNIEDELFISSPLTQQKGSVYREVW-RTVMESISKGF------PEYPLCSAEQG 327
Query: 312 LKNLAVVLAAYESSKTGKAVKVEL 335
+A++ + Y+S+ G+ VK+++
Sbjct: 328 AIGVAILESIYKSALEGREVKIDI 351
>sp|P09400|STRI_STRGR STREPTOMYCIN BIOSYNTHESIS PROTEIN STRI >gi|80803|pir||S17779 strI
protein - Streptomyces griseus >gi|49268|emb|CAA68521.1|
(Y00459) NAD:myo-inositol oxidoreductase [Streptomyces
griseus]
Length = 348
Score = 92.1 bits (225), Expect = 9e-18
Identities = 83/319 (26%), Positives = 141/319 (44%), Gaps = 35/319 (10%)
Query: 32 ISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDE--SVEAVYIAIETYRHKEVAIRAAEEG 89
+ DGA+ ++ A G K E+ L D +A+ +A + + + AA G
Sbjct: 33 VDPDGAHRLAQELAA---GTKAQVTVERELADTVTKADAIVVATPATQRRAPLLAAARAG 89
Query: 90 KDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYI 149
+ EKP+ + E+V+A A +L V F R Q+ +E+I GE+G++ +
Sbjct: 90 LPVFCEKPLTADETEAAELVEAL--AHTRLHVGFQRRCDPEYQRLRELIAAGELGRVLLV 147
Query: 150 YTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGP 209
+ +PP +++ G F D H ID++ WLT + V AD G
Sbjct: 148 RCTAFDHRPPADA----------YEETAGDIFTDCLIHDIDAVHWLTGQPTVAVQAD-GA 196
Query: 210 KIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIK----YYIVGDDGFLDIRS 265
++ D+ TA++ +G AVL+A +P GY + +E+ VG D +R
Sbjct: 197 RLLAGSGYDVATAVLTLADGARAVLSASRLDPHGYDHRVEVLGTKGSLSVGLDARTPLRL 256
Query: 266 AYPDFT----------VYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNL 315
D T YQD T++ A V AF+ + + P TG++AL+
Sbjct: 257 LGQDGTGCPPGPGAQPAYQDFTDRF---EAAYRREVLAFVRTVTEGAPSPCTGQEALRAQ 313
Query: 316 AVVLAAYESSKTGKAVKVE 334
V AA +++TG V+++
Sbjct: 314 RVAAAAGRAARTGTRVELD 332
>sp|Q05184|PHT4_PSEPU PUTATIVE 4,5,-DIHYDROXYPHTHALATE DEHYDROGENASE (DHP DEHYDROGENASE)
>gi|295711|dbj|BAA02512.1| (D13229) PHT4 [Pseudomonas
putida]
Length = 410
Score = 91.3 bits (223), Expect = 1e-17
Identities = 71/236 (30%), Positives = 111/236 (46%), Gaps = 12/236 (5%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R GV+ L T A+RR +LV D + E + + A Y+ E L
Sbjct: 12 LRLGVVGLGRAFTLMLP-TFLADRRVQLVGAC-DPREQARRQFE-RDFDAPAYETIEDLA 68
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
D +V+A+YIA H E AA K +L+EKP+AL+L++ ++ +AGVKL+V
Sbjct: 69 ADSNVDALYIASPHQFHAEHTRIAAANRKHVLVEKPMALSLDECDRMIADCAEAGVKLIV 128
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTI--SEYVKPPMFLEGIDTSWFFDIKKSGGG 179
F P + +E+I GE G ++ I + ++Y++ P E + T+ GGG
Sbjct: 129 GHCHSFDTPYLRTRELIGSGEFGAVKMIQALNYTDYLQRPRRPEELSTA-------EGGG 181
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLT 235
A H +D + L S RV A +G + TA + F+NG A +T
Sbjct: 182 AVFSQAAHQVDVVRLLAGSRATRVRAAVGNWDPARPTEGAYTATLWFENGAFASIT 237
>dbj|BAB04429.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 388
Score = 87.8 bits (214), Expect = 2e-16
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 2 VRFGVISY-----AHPHALRYAATIRANR-RAKLVAISGDGANSGLAKIEAKKYGAKFYQ 55
++ G+I Y AH HA R + R ++ I G G+A+ A +YG + Y
Sbjct: 4 IKVGMIGYKFMGKAHSHAYRDLPMFFPDHLRPEMKVICGRNPE-GVAQA-ASQYGWEEYT 61
Query: 56 -DYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARK 114
+++ L+R + ++ + I + HKE+ + AA+ GK I EKP+ALTL+D + +++A
Sbjct: 62 TNWKDLIRRDDIDLIDINAPSDVHKEITLAAAQAGKHIFCEKPLALTLQDSRHMLEAVEA 121
Query: 115 AGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYI--YTISEYVKPPMFLEGIDTSWFFD 172
AGVK MV FN RFT + AK++I +G +G + + + + +++ P F W
Sbjct: 122 AGVKHMVGFNYRFTPAVLLAKKLIAEGRLGDIYHFRAWFLQDWIVAPDF----PLVWRLQ 177
Query: 173 IKKSGGGGFMDTAPHGIDSLFWL 195
+G G D H ID +L
Sbjct: 178 KDIAGSGAHGDLGAHLIDMAHFL 200
>pir||A83617 probable oxidoreductase PA0237 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946075|gb|AAG03626.1|AE004461_9
(AE004461) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 347
Score = 85.8 bits (209), Expect = 6e-16
Identities = 78/307 (25%), Positives = 136/307 (43%), Gaps = 38/307 (12%)
Query: 50 GAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIV 109
G ++ D+ +LL + +A +A H A+ G +LLEKP+ + L++ E+V
Sbjct: 47 GVPWFGDHRRLLEEARPQAAIVANPNNLHVATALDCLAAGVPLLLEKPVGVQLDEVSELV 106
Query: 110 KAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSW 169
AR++GV L+V + R + +A+++I +G +G+L + + + KP + E +W
Sbjct: 107 AVARRSGVPLLVGHHRRHNPLVVRARQLIAEGALGRLLSVTALWQLKKPDSYFE---VAW 163
Query: 170 FFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNG 229
++ G G + H +D L L E V A G I G +D L+ F NG
Sbjct: 164 ---RREPGAGMLLTNLIHDLDLLRHLC-GEVREVQALAGNAIRGLPNEDNIALLLRFANG 219
Query: 230 VIAVLT------AGWA-------NPKGYPYGLEIK-YYIVGDDGFLDIRSAYPDFTVYQD 275
+ LT A W+ NP YP E Y + G +G L + P ++
Sbjct: 220 ALGSLTGCDAAAAPWSWELAAGENPV-YPRQAEQPCYLLAGTEGALSL----PQLRRWRY 274
Query: 276 KTEKIFWE---RADVEGIVNA---------FIDAIQQDKEPPITGEDALKNLAVVLAAYE 323
+ W A E + F+ + ++ P + DA + LA+V A E
Sbjct: 275 AEARQGWHDPLAASEEAVATGDPLQRQLEHFVRVARGEEAPLMDATDAARTLALVEAVRE 334
Query: 324 SSKTGKA 330
++++G+A
Sbjct: 335 AARSGRA 341
>sp|P49305|YMO1_RHIME HYPOTHETICAL 36.4 KD PROTEIN IN MOCC-MOCA INTERGENIC REGION
(ORF334) >gi|1073149|pir||S51570 hypothetical protein
334 - Rhizobium meliloti >gi|468760|emb|CAA55267.1|
(X78503) ORF334 [Sinorhizobium meliloti]
Length = 334
Score = 85.0 bits (207), Expect = 1e-15
Identities = 65/237 (27%), Positives = 114/237 (47%), Gaps = 15/237 (6%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYG-AKFYQDYEK 59
+VRFG+I A + ++ + ++VAI+ + A+ A ++G + Y Y++
Sbjct: 3 LVRFGIIGTAAIAVEKVIPSMLSAEGLEVVAIASRDLDR--ARAAATRFGIGRSYGSYDE 60
Query: 60 LLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKL 119
+L D +EAVYI + + H AIRAAE GK +L EKP+AL +E+ ++ + G ++
Sbjct: 61 ILADPEIEAVYIPLPNHLHVHWAIRAAEAGKHVLCEKPLALDVEELSRLIDCRDRTGRRI 120
Query: 120 MVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGG 179
R + +++ GEIG++ I + V +D + GGG
Sbjct: 121 QEAVMIRAHPQWDEIFDIVASGEIGEVRAIQGVFTEV-------NLDPKSIVNDASIGGG 173
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYA--DIGPKIWGFQVDDIGTALIEFKNGVIAVL 234
D + I + + +EP RV+A D+ P F +D + +A++ F G A L
Sbjct: 174 ALYDLGVYPIAAARMVFAAEPERVFAVSDLDPV---FGIDRLTSAVLLFPGGRQATL 227
>gb|AAD03557.1| (AF095748) phthalate dihydrodiol dehydrogenase [Burkholderia
cepacia]
Length = 391
Score = 84.3 bits (205), Expect = 2e-15
Identities = 68/236 (28%), Positives = 108/236 (44%), Gaps = 12/236 (5%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R GV +L +R + R +LVA D + + A + A Y D +L
Sbjct: 6 LRIGVAGLGRAFSLMLPTFLR-DSRVQLVAAC-DPRDEARRQFAAD-FAAPTYADVAELA 62
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
D +VE +Y+A H + AA +GK +L+EKP+AL D ++ A R A V L+V
Sbjct: 63 NDPNVEIIYVASPHQFHAQHTEIAAAKGKHVLVEKPMALAAADCDRMIAACRAANVHLIV 122
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTI--SEYVKPPMFLEGIDTSWFFDIKKSGGG 179
F P + +E+I G+ G ++ I + ++Y+ P E + T+ GGG
Sbjct: 123 GHCHSFDTPYLRTRELISLGDFGAVKMIQAVNYTDYLYRPRRPEELATA-------EGGG 175
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLT 235
A H +D + L S R+ A +G + +ALI F+NG A L+
Sbjct: 176 AVFSQAAHQVDIVRMLAGSRATRLRASVGRWDPSRPTEGAYSALIWFENGAYASLS 231
>dbj|BAB05940.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 345
Score = 83.9 bits (204), Expect = 2e-15
Identities = 80/291 (27%), Positives = 130/291 (44%), Gaps = 29/291 (9%)
Query: 58 EKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGV 117
++L + ++A++I T H AA GK I EKPI+ + + K + +AGV
Sbjct: 58 DELFSNRDIDAIFICSSTDTHAAFIKAAALAGKHIFCEKPISFHVTETKGALNIVNEAGV 117
Query: 118 KLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSG 177
K V FN R+ + ++ +E ++ G IG I S + P L ++ S
Sbjct: 118 KFQVGFNRRYDKHFRRVQECVQAGAIGAPHIIRVSSRDPEAPP-LSYVERS--------- 167
Query: 178 GGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWG--FQVDDIGTALIE--FKNGVIAV 233
GG FMD H D + +L+ SE V + +V D+ TA+I +NG IAV
Sbjct: 168 GGMFMDMTIHDFDMVRYLSGSEVTEVSVKAANLVDSRIGEVGDVDTAIITLMLENGAIAV 227
Query: 234 LTAGWANPKGYPYGLEIKYYIVGDDGFL--------DIRSAYPDFTVYQDKTEKIFWERA 285
+ N + YG + + + G G + +++ + D TV D + F +R
Sbjct: 228 ID----NSRQAAYGYDQRVEVFGSLGSVSADNERKTNVQISTKD-TVTLDLPKHFFLDRY 282
Query: 286 D--VEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKVE 334
+ + V F AI +D+ TGED K + LAA +S + V V+
Sbjct: 283 EQAYKDEVAEFATAILEDQPLRCTGEDGYKAELLALAAKQSWLENRPVAVK 333
>gb|AAC31183.1| (AF076240) putative NADH-inositol dehydrogenase MocA [Rhizobium
leguminosarum bv. viciae]
Length = 306
Score = 82.7 bits (201), Expect = 6e-15
Identities = 70/306 (22%), Positives = 125/306 (39%), Gaps = 25/306 (8%)
Query: 21 IRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKE 80
+RA + LV ++ ++ ++ G K Y+ ++++ ++ V IA + H E
Sbjct: 19 LRAASESLLVEVTAVVEPVAATRLALERSGIKTYKTADEMIDAGEIDGVLIATPSKTHVE 78
Query: 81 VAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEK 140
A G IL EKP +T E+ ++ +AA + V L + + RF L+K ++ I
Sbjct: 79 NITNIAARGLPILCEKPCGVTAEEARKAAEAAEQFKVHLQIGYWRRFVPELEKLRQNIRS 138
Query: 141 GEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEP 200
G +G+ I PP + +GGG +D H D + WLT EP
Sbjct: 139 GLLGEPYLISCFQWDETPPA----------ASFRATGGGALIDMGVHEFDQMRWLTGQEP 188
Query: 201 IRVYADIGPKIWGFQVD---DIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGD 257
+ +V+ D L + G + +++ G + +P G + G
Sbjct: 189 SNFRVAASKTTFAGKVEGDPDAVQLLCDLSGGGVGLVSLG----RRFPPGDACWAQVFGT 244
Query: 258 DGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAV 317
GF ++R +P E +F + + F+ A + T +DA+ LA+
Sbjct: 245 SGFEEVRFFWP------PNGEAVFLNA--LRSQLEDFVQAARGGASQGATAQDAVTALAI 296
Query: 318 VLAAYE 323
AA E
Sbjct: 297 AEAATE 302
>dbj|BAB05939.1| (AP001514) dehydrogenase [Bacillus halodurans]
Length = 345
Score = 81.5 bits (198), Expect = 1e-14
Identities = 77/309 (24%), Positives = 131/309 (41%), Gaps = 36/309 (11%)
Query: 47 KKYGAKF-YQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDG 105
+++G + Y YE++L +E ++A++IA + H E + E+G + EKP+ L L +
Sbjct: 47 ERWGVPYGYTSYEEMLANEELDAIFIASPSGFHCEQIKKGLEKGFHVFCEKPLGLHLAEV 106
Query: 106 KEIVKAA-RKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEG 164
+E+ A R M+ F R+ Q AKE I +GEIG+ I Y P
Sbjct: 107 REVENAVNRHKDQVFMLGFMRRYDPSYQAAKEKINRGEIGEPVLIRC---YGLDP--ASQ 161
Query: 165 IDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIG----PKIWGFQVDDIG 220
ID F GG F+D + H D W +E V+A G P+ + G
Sbjct: 162 IDGFLAFAKANDSGGLFLDMSIHDFDLARWYLGAEASEVWAIGGSYSRPEFAELGDAETG 221
Query: 221 TALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKI 280
A++ F N I + AG + +G I+ I+G G + I S + + +
Sbjct: 222 AAMVRFDNQAIGLFVAG----RNCAHGYHIETEIIGTKGTIRIGS------IPERNQAVV 271
Query: 281 FWERADVEGIVNAFIDAIQQ---------------DKEPPITGEDALKNLAVVLAAYESS 325
E + V FI+ +Q ++P +T +D +++ + A +S
Sbjct: 272 MNEHGVIHECVQGFIERFEQAYRAEAEEFIRCILEGRKPDVTVKDGVESTKLGYACKQSF 331
Query: 326 KTGKAVKVE 334
T + V+
Sbjct: 332 TTKTLINVQ 340
>emb|CAC11395.1| (AL445063) glucose-fructose oxidoreductase related protein
[Thermoplasma acidophilum]
Length = 322
Score = 80.8 bits (196), Expect = 2e-14
Identities = 77/290 (26%), Positives = 131/290 (44%), Gaps = 32/290 (11%)
Query: 52 KFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKA 111
K Y +YE LR S V + + H E+ A + K +L+EKPI ++ G +++
Sbjct: 47 KVYDNYEDALRSGS-NIVDLVVPDGLHYEMGSLALKSKKHLLVEKPITPDIDSGISLIQQ 105
Query: 112 ARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFF 171
A ++ +KLMV F + +A I GEIGK + + + L+G W
Sbjct: 106 AEESKLKLMVAEQFYFDPSVNEAIRRINNGEIGKPHTVIVRHQSFRE---LKG----WRN 158
Query: 172 DIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVI 231
+ G G +D H ID+L L R + W F +D A+ F+NG+
Sbjct: 159 EKSMMGRGILIDEGTHYIDTL--LNFGGRYRSLRSFVHRTWDFLGEDTAEAVFNFENGMH 216
Query: 232 AVLTAGWANPKGYPYGLEIKYYIVGDDG--FLDI-------------RSAYPDFTVYQDK 276
+ W P+ Y L ++ I+GD G + DI ++AY D V
Sbjct: 217 GLFFYSWNYPE---YPLLPEFEIIGDAGSIYEDIGTKPTEPWDQRKRKTAYGDIIV---N 270
Query: 277 TEKIFWERADV-EGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAYESS 325
+ I E DV E ++ F++A+++D+ P+ + AL+++ + Y++S
Sbjct: 271 GKHIPVEPYDVIEREISGFLNAVEKDEPVPMPPDLALRDIITIDRIYKAS 320
>sp|O68965|MI2D_RHIME MYO-INOSITOL 2-DEHYDROGENASE >gi|3088561|gb|AAC70005.1| (AF059313)
myo-inositol dehydrogenase [Sinorhizobium meliloti]
Length = 330
Score = 80.0 bits (194), Expect = 4e-14
Identities = 91/346 (26%), Positives = 142/346 (40%), Gaps = 33/346 (9%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
VRFG++ + +A + N A+LVA++ A A+ A YG + + + +
Sbjct: 3 VRFGLLGAGRIGKV-HAKAVSGNADARLVAVAD--AFPAAAEAIAGAYGCEV-RTIDAIE 58
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
++AV I T H ++ R A GK I EKPI L E + +K KLMV
Sbjct: 59 AAADIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 118
Query: 122 PFNPRFTQPLQKAKEMIEKGEIGKLEYI-YTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
FN RF ++ I+ G IG++E + T + PP+ D K GG
Sbjct: 119 GFNRRFDPHFMAVRKAIDDGRIGEVEMVTITSRDPSAPPV-----------DYIKRSGGI 167
Query: 181 FMDTAPHGIDSLFWLTESEPIRVYADIG---PKIWGFQVD-DIGTALIEFKNGVIAVLTA 236
F D H D +L EP+ V A K G D D + +++ +G A++
Sbjct: 168 FRDMTIHDFDMARFLLGEEPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAII-- 225
Query: 237 GWANPKGYPYGLEIKYYIVGDDGFLDIRSAYP------DFTVYQDKTEKIFWERADVEGI 290
AN + YG + + + G G + + P Y F+ E
Sbjct: 226 --ANSRRATYGYDQRIEVHGSKGAVAAENQRPVSIEIATGDGYTRPPLHDFFMTRYTEAY 283
Query: 291 VN---AFIDAIQQDKEPPITGEDALKNLAVVLAAYESSKTGKAVKV 333
N +FI AI++ E +G D L LA+ AA S + + +
Sbjct: 284 ANEIESFIAAIEKGAEIAPSGNDGLAALALADAAVRSVAEKRQISI 329
>emb|CAB88965.1| (AL353864) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 387
Score = 79.2 bits (192), Expect = 6e-14
Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 7/154 (4%)
Query: 40 GLAKIEAKKYG-AKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPI 98
G A+ A ++G A +D+ ++ D V AV I + H+E+A+ A GK I +EKP+
Sbjct: 48 GRAEEAAAQFGFASTTRDWREVAADPRVHAVSITAPNFLHREIAVAMAGAGKHIWVEKPV 107
Query: 99 ALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEY--IYTISEYV 156
L+ +D + + A AGV+ V FN R ++ A+ +I GEIG + + + S+Y
Sbjct: 108 GLSSDDARAVADAVSGAGVQGAVGFNYRNAPAVETARRLIAAGEIGTVTHARLRFFSDYA 167
Query: 157 KPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGID 190
P EG T W ++ ++ G G D A HG D
Sbjct: 168 AHP---EGALT-WRYERERGGSGVLGDLASHGAD 197
>sp|Q54728|YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION (ORF-5)
>gi|1163116|gb|AAC44397.1| (U43526) ORF-5 [Streptococcus
pneumoniae]
Length = 347
Score = 78.0 bits (189), Expect = 1e-13
Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 17/253 (6%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
MV++GV+ + A A ++ N A++ + D N A+ A++ GAK ++L
Sbjct: 1 MVKYGVVGAGYFGA-ELARYMQKNDGAEITLLY-DPDN---AEAIAEELGAKVASSLDEL 55
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
+ + V+ V +A HKE I+AA+ GK++ EKPIAL+ +D +E+V A ++ V M
Sbjct: 56 VSSDEVDCVIVATPNNLHKEPVIKAAQHGKNVFCEKPIALSYQDCREMVDACKENNVTFM 115
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
F + AKE+I +G IG + Y +T + + + SW +KSGG
Sbjct: 116 AGHIMNFFNGVHHAKELINQGVIGDVLYCHTARNGWEE----QQLSVSWKKIREKSGGHL 171
Query: 181 FMDTAPHGIDSLFWLTESEPIRVYADIG-----PKIWGFQVDDIGTALIEFKNGVIAVLT 235
+ H +D + +L P V G + +G + DD+ +EF N A+L
Sbjct: 172 YHHI--HELDCVQFLMGGMPETVTMTGGNVAHEGEHFGDE-DDMIFVNMEFSNKRFALLE 228
Query: 236 AGWANPKGYPYGL 248
G A G Y L
Sbjct: 229 WGSAYRWGEHYVL 241
>gb|AAC31181.1| (AF076240) unknown [Rhizobium leguminosarum bv. viciae]
Length = 334
Score = 77.3 bits (187), Expect = 2e-13
Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 13/235 (5%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAK-LVAISGDGANSGLAKIEAKKYGAK-FYQDYEK 59
VR+G+I A A+ I A RA+ L ++ ++ A+ A + G K Y Y+
Sbjct: 4 VRWGIIGTA---AIALEKVIPAMSRAEGLEVVAFASRDADKAQAAASRLGLKRSYGSYDA 60
Query: 60 LLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKL 119
+L D +EAVYI + + H E AIRAAE GKD+L EKP+AL + + ++ + G +
Sbjct: 61 ILADPDIEAVYIPLPNHLHVEWAIRAAEAGKDVLCEKPLALDVRELNRLIDCRDRTGRLI 120
Query: 120 MVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGG 179
+ + + ++ GEIG++ + + + +D + GGG
Sbjct: 121 QEAVMIQAHRQWDETLGIVASGEIGEVRAVTGVFTEI-------NLDPKSIVNNAAIGGG 173
Query: 180 GFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVL 234
D + I + + +EP RV+A + F VD + +A++ F A L
Sbjct: 174 ALYDLGVYPIAAARLVFGAEPERVFA-VSAFDPDFGVDRLTSAILSFPRARQATL 227
>emb|CAC12307.1| (AL445066) glucose-fructose oxidoreductase related protein
[Thermoplasma acidophilum]
Length = 321
Score = 76.1 bits (184), Expect = 5e-13
Identities = 70/267 (26%), Positives = 117/267 (43%), Gaps = 37/267 (13%)
Query: 78 HKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEM 137
H +V +++ GK +++EKPIA + D +E+++ A + K MV F + KAKE+
Sbjct: 72 HHDVTVKSLAMGKHVMVEKPIATDISDAREMIRTAVQNRRKFMVADQYYFDPSVWKAKEI 131
Query: 138 IEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTE 197
++ G+IG ++TI + G W GGG +D H ID++ L
Sbjct: 132 MDSGKIGS---VHTIIIRDQRKYNWHG----WRSQASIMGGGPLIDGGIHFIDTMLNLA- 183
Query: 198 SEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEI-KYYIVG 256
E I V ++ + + D A+ +FK+G + W GYPY + + I+G
Sbjct: 184 GEYISVRSNFYRSVASIEEPDTVEAIFKFKDGSNGLFFYSW----GYPYPPSLPSFEIIG 239
Query: 257 DDGFL--DIRSAYPDFTVYQDK----------------TEKIFWERADVEGIVNAFIDAI 298
DG + D+RS +F + K IF + A + F+ ++
Sbjct: 240 TDGSILEDLRSKPSNFEAPKGKRAYGDPLLNGDLIDLGPHDIFVDEA------SGFLKSV 293
Query: 299 QQDKEPPITGEDALKNLAVVLAAYESS 325
D P E AL++L V Y +S
Sbjct: 294 VDDTPVPFDPELALRDLRAVKDIYANS 320
>sp|P49307|MOCA_RHIME RHIZOPINE CATABOLISM PROTEIN MOCA >gi|2120810|pir||S51572 mocA
protein - Rhizobium meliloti >gi|468762|emb|CAA55269.1|
(X78503) mocA [Sinorhizobium meliloti]
Length = 317
Score = 75.7 bits (183), Expect = 7e-13
Identities = 69/306 (22%), Positives = 116/306 (37%), Gaps = 25/306 (8%)
Query: 21 IRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKE 80
+RA + LV I+ +++ G K Y+ ++ V+ V IA + H +
Sbjct: 19 VRAAAESSLVEIAAVADPIAASRLNLAGNGIKTYETAGDMIEAGEVDGVLIATPSNTHVD 78
Query: 81 VAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEK 140
A G IL EKP +T E+ ++ A + V L + + RF L++ ++ I
Sbjct: 79 TVADIAARGLPILCEKPCGVTAEEARKAADVAERYKVHLQIGYWRRFVPELKQLRDDIRA 138
Query: 141 GEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEP 200
G +G L + PP + +GGG F+D H D + WLT EP
Sbjct: 139 GLLGNLYLVSCFQWDEAPPA----------NSFRATGGGAFIDMGVHEFDQMRWLTGQEP 188
Query: 201 IRVYADIGPKIWGFQV---DDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGD 257
+ V D L + +G +++ G + +P G + G
Sbjct: 189 TNFRVATSKTTFAGAVKGDPDAVQLLCDLSDGSSGLVSLG----RRFPPGDACWTQVFGT 244
Query: 258 DGFLDIRSAYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAV 317
GF + R +P E +F + + F+ A + T DA+ L +
Sbjct: 245 SGFAEARFFWP------PDGEAVFLNALQAQ--LEDFVQAARGGAPRGATASDAVAALTI 296
Query: 318 VLAAYE 323
AA E
Sbjct: 297 AEAATE 302
>emb|CAB96550.1| (AJ007932) D-oliose 4-ketoreductase [Streptomyces argillaceus]
Length = 328
Score = 74.1 bits (179), Expect = 2e-12
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 38 NSGLAKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKP 97
++G AK+ A ++G + YE+LL + ++AVY+ + H RA E G +L+EKP
Sbjct: 42 DAGRAKLFAGEFGGEPVAGYEELLARDDLDAVYVPLPAALHAPWTGRALEAGLHVLVEKP 101
Query: 98 IALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVK 157
A T + + +AAR+ G+ +M F + A+ ++++G IG+L + +E+
Sbjct: 102 AAATAAEADRLTRAARERGLVVMENFGFVHHAQQEAARSLLDEGAIGELRSL--TAEFAF 159
Query: 158 PPMFLEGIDTSWFFDIKKS---GGGGFMDTAPHGIDS--LFWLTESEPIRVYADIGPKIW 212
PP+ DT DI+ GGG +D + I + LF E E P
Sbjct: 160 PPL----PDT----DIRYQPGLGGGALLDAGVYPIRTARLFLGDELEVTGASLREDP--- 208
Query: 213 GFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDIRSAY---PD 269
G VD G AL+ G+ A L G+ + Y G Y + G G + + AY D
Sbjct: 209 GRGVDVAGAALLTGPTGISAHLGFGFVH--SYRCG----YTLWGSAGRIGLNRAYSARDD 262
Query: 270 FT 271
FT
Sbjct: 263 FT 264
>gb|AAG09709.1|AF218837_4 (AF218837) unknown [Pasteurella multocida]
Length = 367
Score = 73.4 bits (177), Expect = 4e-12
Identities = 73/253 (28%), Positives = 113/253 (43%), Gaps = 17/253 (6%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
M+++GV+ + A A + N AK+ + +AK E + A ++L
Sbjct: 1 MMKYGVVGVGYFGA-DLARFMNENENAKVTMVYDPENGETIAK-ELQCIAAT---SLKQL 55
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
+ V+ V +A Y HKE I AA+ GK + EKPIAL +D E+V+ + GV M
Sbjct: 56 VSSPEVDCVIVATPNYLHKEPVIEAAKHGKHVFCEKPIALNYQDCDEMVRTCEENGVIFM 115
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGG 180
F + AKE+I++G IGK+ Y ++ + E SW KSGG
Sbjct: 116 AGHVMNFFNGVHHAKELIKQGVIGKVLYCHSARNGWED----EQSSISWKKIRAKSGGHL 171
Query: 181 FMDTAPHGIDSLFWLTESEPIRVYADIG-----PKIWGFQVDDIGTALIEFKNGVIAVLT 235
+ H +D + ++ P V G + +G + DD+ +EF+ G AVL
Sbjct: 172 YHHI--HELDCIQFIMGGMPKTVTMTAGNVAHQSEKFGDE-DDMLFLNLEFEGGRFAVLE 228
Query: 236 AGWANPKGYPYGL 248
G A G Y L
Sbjct: 229 WGSAFRWGEHYVL 241
>pir||S76068 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001423|dbj|BAA10046.1| (D63999) hypothetical
protein [Synechocystis sp.]
Length = 364
Score = 72.6 bits (175), Expect = 6e-12
Identities = 66/239 (27%), Positives = 103/239 (42%), Gaps = 31/239 (12%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLL 61
+R GVI + + + + + V I+ GL A KY F++DY+++L
Sbjct: 24 IRIGVIGVGNM-GQHHTRVLSLMKDVEFVGIADVNVERGLDT--ASKYRVHFFEDYQEML 80
Query: 62 RDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMV 121
V+AV +A+ T H +V + + L+EKPIA ++ + + +V AA A L V
Sbjct: 81 --PHVDAVCVAVPTRLHHDVGMNCLQNNVHTLIEKPIAASIAEAESLVNAAADANCILQV 138
Query: 122 ----PFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSG 177
FNP F +E +I K E + I + P D S D+
Sbjct: 139 GHIERFNPAF----------LELTKILKTEELLAIEAHRMSPYSQRANDVSVVLDL---- 184
Query: 178 GGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTA 236
H ID L L SE +++ A G + G D TA + F +G++A LTA
Sbjct: 185 -------MIHDIDLLLELVGSEVVKLSAS-GSRASGSGYLDYVTATLGFSSGIVATLTA 235
>sp|P74041|Y816_SYNY3 HYPOTHETICAL 41.5 KD PROTEIN SLL0816 >gi|7469938|pir||S75555
hypothetical protein sll0816 - Synechocystis sp. (strain
PCC 6803) >gi|1653200|dbj|BAA18116.1| (D90911)
hypothetical protein [Synechocystis sp.]
Length = 371
Score = 71.0 bits (171), Expect = 2e-11
Identities = 46/146 (31%), Positives = 76/146 (51%), Gaps = 11/146 (7%)
Query: 54 YQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAAR 113
Y + E+LL + V+AV IA + H E+A +A GK +LLEKP+ L +E+ E+ AR
Sbjct: 57 YNNLEELLANPEVQAVTIASPPFLHYEMAKQAILAGKHVLLEKPMTLRVEETIELYHLAR 116
Query: 114 KAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYI---YTISEYVKPPMFLEGIDTSW- 169
+ V+++ F RF Q E++ +G +G+L+ I + + P + +W
Sbjct: 117 QREVQVIPDFEFRFVPAWQYVAELLGQGILGQLKLIKVDWLVGSRANP-------NRAWN 169
Query: 170 FFDIKKSGGGGFMDTAPHGIDSLFWL 195
++ ++ GGG A H D L WL
Sbjct: 170 WYAQREKGGGALGALASHTFDYLHWL 195
>emb|CAC11912.1| (AL445065) hypothetical protein [Thermoplasma acidophilum]
Length = 322
Score = 70.6 bits (170), Expect = 2e-11
Identities = 71/297 (23%), Positives = 128/297 (42%), Gaps = 25/297 (8%)
Query: 38 NSGLAKIEAKKYGAK-FYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEK 96
N + ++ + YG + Y D L D +AV I + H EVA++A E+GK +L+EK
Sbjct: 37 NPQVLEMYRRDYGVRETYSDMAAAL-DADNDAVDIVLPHNLHYEVAMKAIEKGKHVLVEK 95
Query: 97 PIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISE-- 154
P+ +++ +I+ A+K +K MV F +KA E+++ G+IG + + +
Sbjct: 96 PVTGRIDEAVKIINQAKKKRLKFMVAEQFYFDPSFRKALEIVQSGKIGDVRTVIVRDQQR 155
Query: 155 YVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGF 214
Y P W + GG +D H ++ +F + + A
Sbjct: 156 YDAP---------GWRSRKNEMMGGSLIDGGVHFLE-IFLDFGGQWKSISAHNYKGGTSI 205
Query: 215 QVDDIGTALIEFKNGVIAVLTAGWA--NPKGYP----YGLEIKYYIVGDDGFL---DIRS 265
+ +D AL F+N V + W+ P P G E Y + + + ++R+
Sbjct: 206 EGEDNTAALFTFENDVHGIFYYSWSYVEPPKLPAFEVIGTEGSVYEMKESSLMKPDNVRT 265
Query: 266 AYPDFTVYQDKTEKIFWERADVEGIVNAFIDAIQQDKEPPITGEDALKNLAVVLAAY 322
+ V + W+ E + F+ +I++D E P +A++NL VL Y
Sbjct: 266 VL-NQPVLNGNIVSVEWKDV-YESEIGGFLKSIEKDTEVPYPPANAIRNLETVLMMY 320
>sp|P55480|Y4HM_RHISN HYPOTHETICAL PROTEIN Y4HM PRECURSOR >gi|7465612|pir||T10847 y4hM
protein - Rhizobium sp. (strain NGR234) plasmid pNGR234a
>gi|2182432|gb|AAB92451.1| (AE000077) Y4hM [Rhizobium
sp. NGR234]
Length = 403
Score = 70.2 bits (169), Expect = 3e-11
Identities = 67/271 (24%), Positives = 114/271 (41%), Gaps = 14/271 (5%)
Query: 31 AISGDGANSGLAKIEAKKYGAKFYQDYEKLL-----RDESVEAVYIAIETYRHKEVAIRA 85
A+S D N+ + E + Y D+ + RD+ +EAV I + H +A
Sbjct: 51 ALSSDPENAHASAAEWMIAPDRSYSDWNAMATAEAARDDGIEAVSIVTPNWTHHRIATAF 110
Query: 86 AEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEMIEKGEIGK 145
+ G D++L+KP+ T+ D +E+V+ R +++ + +++AK MI G +G
Sbjct: 111 LKAGIDVILDKPMTTTVSDARELVELQRATDRLVIMTYPYAHHAMVRQAKHMIRNGAVGT 170
Query: 146 LE--YIYTISEYVKPPMFLEGIDTSWFFDIKKSG-GGGFMDTAPHGIDSLFWLTESEPIR 202
+ ++ + E+ P + W D +K G D H L LT + R
Sbjct: 171 VRQAHVEYVQEWATAPFSSDAKGAMWRQDPEKVGRASATGDIGTHAYHLLHTLTGQDIAR 230
Query: 203 VYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLD 262
+ A+ ++D +NG +L A P Y GL I+ + GD G L+
Sbjct: 231 LRAEFHTCGAVKAMEDTAYVTFRLENGAPGILWVTQAAPGQY-CGLRIRVW--GDRGGLE 287
Query: 263 IRSAYPDFTVY--QDKTEKIFWERADVEGIV 291
P+ Y + E+IF R GIV
Sbjct: 288 WDQEKPEALRYVPLGEQEQIF-VRGHGSGIV 317
>gb|AAD13550.1| (AF080235) oxidoreductase homolog [Streptomyces cyanogenus]
Length = 321
Score = 70.2 bits (169), Expect = 3e-11
Identities = 75/292 (25%), Positives = 124/292 (41%), Gaps = 25/292 (8%)
Query: 2 VRFGVISYAHPHALRYAATIRANRRAKLVAI-SGDGANSGLAKIEAKKYGAKFYQDYEKL 60
VR GV+ A R + A + A+ S D A +G A ++GA+ Y +L
Sbjct: 4 VRIGVLGCADIARRRMLPAMAAEPGITIAAVASRDSARAGEL---AGRFGARPVTGYAEL 60
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
L + ++AVY+ + H A GK +L EKP+ +L + + ++ A+++G+ LM
Sbjct: 61 LERDDIDAVYVPLPAALHARWTEAALRRGKHVLAEKPLTTSLAESRRLIALAQESGLALM 120
Query: 121 VPFNPRFTQPLQ--KAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGG 178
N F Q ++++ G IG+L + + P D + + + GG
Sbjct: 121 E--NVMFIHHSQHDAVRKLVWDGVIGELRAFHAAFAIPRLP----DDDIRY---VPELGG 171
Query: 179 GGFMDTAPHGIDSLFWLTESEPIRVYADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGW 238
G DT + + + + ++V + + G +VD G+AL+ GV LT
Sbjct: 172 GALWDTGVYPVRAALHFL-GDNLQVLGAMLTQEPGRRVDTAGSALLRTPEGVGVQLTF-- 228
Query: 239 ANPKGYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQDKTEKIFWERADVEGI 290
G +G Y I G G + + A FT D I ER VE I
Sbjct: 229 ----GLDHGYRSAYEIWGSQGRITVERA---FTPPADHRPLIRVERRGVEEI 273
>sp|P26935|MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE >gi|80338|pir||JH0511 myo-inositol
2-dehydrogenase (EC 1.1.1.18) iolG - Bacillus subtilis
>gi|143086|gb|AAA22543.1| (M76431) inositol
dehydrogenase [Bacillus subtilis]
>gi|709987|dbj|BAA03296.1| (D14399) myo-inositol
dehydrogenase [Bacillus subtilis]
>gi|2636516|emb|CAB16006.1| (Z99124) myo-inositol
2-dehydrogenase [Bacillus subtilis]
Length = 344
Score = 69.9 bits (168), Expect = 4e-11
Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 43/327 (13%)
Query: 27 AKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKLLRDESVEAVYIAIETYRHKEVAIRAA 86
A++VA++ + +E + A Y + + LL DE+V+AV + H+ ++A
Sbjct: 28 AEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKAI 87
Query: 87 EEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM-VPFNPRFTQPLQKAKEMIEKGEIGK 145
+ K + EKP+A T E IV+ K G +L+ V F R+ + KE ++ G+
Sbjct: 88 KAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVNGE 147
Query: 146 LEYIYTISEYVKPPMFLEGIDTSWFFDIKKSGGGGFMDTAPHGIDSLFWLT--ESEPIRV 203
I+ + P + T +DT H ID L WL + E ++V
Sbjct: 148 PLMIHCAH---RNPTVGDNYTTDM----------AVVDTLVHEIDVLHWLVNDDYESVQV 194
Query: 204 YADIGPKIWGFQVDDIGTALIEFKNGVIAVLTAGWANPKGYPYGLEIKYYIVGDDGFLDI 263
K + D +IE K G++ + + N K YG +I+ IVG+DG + +
Sbjct: 195 IYPKKSKNALPHLKDPQIVVIETKGGIV-INAEIYVNCK---YGYDIQCEIVGEDGIIKL 250
Query: 264 RSAYPDFTVYQDKTEKIF-------WERA-----DVEGIVNAFIDAIQQDKEPPITGEDA 311
P+ + + E F W+R DVE + FID+IQ K+ ++G A
Sbjct: 251 ----PEPSSISLRKEGRFSTDILMDWQRRFVAAYDVE--IQDFIDSIQ--KKGEVSGPTA 302
Query: 312 LKNLAVVL---AAYESSKTGKAVKVEL 335
+ A ++ ++G+ KVEL
Sbjct: 303 WDGYIAAVTTDACVKAQESGQKEKVEL 329
>pir||A69834 conserved hypothetical protein yhjJ - Bacillus subtilis
>gi|2226182|emb|CAA74472.1| (Y14081) hypothetical
protein [Bacillus subtilis] >gi|2633389|emb|CAB12893.1|
(Z99109) similar to hypothetical proteins [Bacillus
subtilis]
Length = 350
Score = 69.5 bits (167), Expect = 5e-11
Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 17/259 (6%)
Query: 1 MVRFGVISYAHPHALRYAATIRANRRAKLVAISGDGANSGLAKIEAKKYGAKFYQDYEKL 60
M + G+I A A +A + + A+LV + N A+ K +G K +++ ++L
Sbjct: 1 MKKIGIIG-AGGIARAHATALSTIKNAELVGVYD--INQQNAESFVKTFGGKSFENVDEL 57
Query: 61 LRDESVEAVYIAIETYRHKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLM 120
+ ++ E + +A + HKE A++A + K +L EKP+A++LE+ + A + V+
Sbjct: 58 I--DASEGLIVASPNFCHKEHALQALGKHKHVLCEKPMAISLEEASIMKDTAERLSVRAS 115
Query: 121 VPFNPRFTQPLQKAKEMIEKGEIGKLEYIYTISEYVKPPMFLEGIDTSWFFDI-KKSGGG 179
+ FN R+ + K +I E+G I +I + K L +W D K G
Sbjct: 116 MGFNYRYLSYVNILKSLIINNELGN---ILSIKVHFKKNSALRRKKFTWRDDANSKKTSG 172
Query: 180 GFMDTAPHGIDSLFWLTES----EPIRVYADIGPKIWGFQ---VDDIGTALIEFKNGV-I 231
D H ID +++L ES E +R + K + VDD + +N V +
Sbjct: 173 SLGDLGIHLIDMVWYLFESDFITESVRAKMNTNVKTKEDKQVLVDDYAEIYGQLRNKVFV 232
Query: 232 AVLTAGWANPKGYPYGLEI 250
++T+ + P+ + +E+
Sbjct: 233 NIITSKCSVPEDCGFSIEV 251
>gb|AAD51832.1|AF175299_7 (AF175299) ThuB [Sinorhizobium meliloti]
Length = 365
Score = 68.7 bits (165), Expect = 9e-11
Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 27/244 (11%)
Query: 78 HKEVAIRAAEEGKDILLEKPIALTLEDGKEIVKAARKAGVKLMVPFNPRFTQPLQKAKEM 137
H + GK +L EKP+A E E+ AA +AG+ MV R PLQKA+E+
Sbjct: 80 HHPTTLALIAAGKHVLCEKPLAENYEKAAEMAAAAERAGLVTMVNLTYRNVAPLQKAREL 139
Query: 138 IEKGEIGK---LEYIYTISEYVKPPMFLEGIDTSWFFDIK-KSGGGGFM-DTAPHGIDSL 192
+ GEIG+ LE Y S V ++ W + + K G G + D H +D
Sbjct: 140 VVAGEIGRVRHLEASYLQSWLVSRAWGDWASESKWLWRLSTKHGSNGVLGDVGIHILDFA 199
Query: 193 FWLTESEPIRVYA-----DIGP--KIWGFQVD--DIGTALIEFKNGVIAVLTAG-WANPK 242
+ S RV+A D P +I + +D D EF+NG +AV+ A WA
Sbjct: 200 GYGANSSVERVFARLKAFDKAPDNRIGEYDLDANDSFAMTAEFENGAMAVIHASRWAT-- 257
Query: 243 GYPYGLEIKYYIVGDDGFLDIRSAYPDFTVYQ----DKTEKIFWERADVEGI---VNAFI 295
G+ L ++ + GD G L++ PD + + EK W D + F+
Sbjct: 258 GHLNELRLRLH--GDRGALEVIHT-PDGSSLRGCMGPDVEKAVWRTVDAGTVPTNYQRFV 314
Query: 296 DAIQ 299
+A++
Sbjct: 315 EAVK 318
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126223495
Number of Sequences: 2977
Number of extensions: 5520525
Number of successful extensions: 13699
Number of sequences better than 1.0e-10: 55
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 13601
Number of HSP's gapped (non-prelim): 61
length of query: 335
length of database: 189,106,746
effective HSP length: 55
effective length of query: 280
effective length of database: 156,189,961
effective search space: 43733189080
effective search space used: 43733189080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)