BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1144 (PAB1144) DE:Hypothetical protein
(484 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75025 hypothetical protein PAB1144 - Pyrococcus abyssi (st... 968 0.0
pir||F71210 hypothetical protein PH1950 - Pyrococcus horikoshii ... 767 0.0
sp|Q58981|YF86_METJA HYPOTHETICAL PROTEIN MJ1586 >gi|2128065|pir... 328 1e-88
pir||H69034 conserved hypothetical protein MTH1256 - Methanobact... 303 4e-81
gb|AAK42421.1| Conserved hypothetical protein [Sulfolobus solfat... 290 2e-77
gi|11498457 conserved hypothetical protein [Archaeoglobus fulgid... 277 3e-73
gb|AAG19626.1| (AE005051) Vng1272c [Halobacterium sp. NRC-1] 257 2e-67
pir||C72317 conserved hypothetical protein - Thermotoga maritima... 253 4e-66
emb|CAC12571.1| (AL445067) conserved hypothetical protein [Therm... 231 1e-59
pir||G72464 hypothetical protein APE2362 - Aeropyrum pernix (str... 200 3e-50
pir||F70418 conserved hypothetical protein aq_1365 - Aquifex aeo... 189 8e-47
sp|P31806|YJEF_ECOLI HYPOTHETICAL 54.7 KD PROTEIN IN PSD-AMIB IN... 168 1e-40
pir||H82489 conserved hypothetical protein VCA0191 [imported] - ... 145 9e-34
pir||A83029 conserved hypothetical protein PA4949 [imported] - P... 130 4e-29
pir||S41739 hypothetical protein - Escherichia coli >gi|304912|g... 125 1e-27
pir||T35571 hypothetical protein SC6G4.20c SC6G4.20c - Streptomy... 123 3e-27
pir||B82765 conserved hypothetical protein XF0757 [imported] - X... 122 7e-27
emb|CAB94036.1| (AL358652) conserved hypothetical protein [Leish... 122 9e-27
pir||A75386 conserved hypothetical protein - Deinococcus radiodu... 118 2e-25
sp|P74217|YE33_SYNY3 HYPOTHETICAL 55.2 KD PROTEIN SLL1433 >gi|74... 116 7e-25
sp|O06250|YY33_MYCTU HYPOTHETICAL 46.9 KDA PROTEIN RV3433C >gi|7... 111 1e-23
pir||G81111 conserved hypothetical protein NMB1197, NMB1159 [imp... 109 9e-23
pir||C81906 hypothetical protein NMA1369 [imported] - Neisseria ... 103 5e-21
pir||C81437 hypothetical protein Cj0188c [imported] - Campylobac... 102 7e-21
pir||T41463 conserved hypothetical PFAM UPF0031 containing prote... 102 1e-20
gb|AAF49189.1| (AE003518) CG10424 gene product [Drosophila melan... 101 2e-20
sp|Q9ZJM4|YD63_HELPJ HYPOTHETICAL PROTEIN HP1363/JHP1281 >gi|746... 99 1e-19
sp|P94368|YXKO_BACSU HYPOTHETICAL 29.9 KD PROTEIN IN SIGY-CYDD I... 95 1e-18
sp|P37391|YY33_MYCLE HYPOTHETICAL 39.3 KDA PROTEIN IN GADB-GLMS ... 94 3e-18
gi|6322698 Ykl151cp [Saccharomyces cerevisiae] >gi|549726|sp|P36... 93 8e-18
sp|P56176|YD63_HELPY HYPOTHETICAL PROTEIN HP1363 >gi|7463951|pir... 93 8e-18
emb|CAA78469.2| (Z14092) predicted using Genefinder~contains sim... 92 1e-17
gi|11433649 hypothetical protein FLJ10769 [Homo sapiens] 89 1e-16
gi|8922654 hypothetical protein FLJ10769 [Homo sapiens] >gi|7023... 88 3e-16
pir||S30872 hypothetical protein R107.2 - Caenorhabditis elegans 87 3e-16
gb|AAD21559.1| (AF088896) unknown [Zymomonas mobilis] 87 6e-16
sp|P32740|YNH2_CAEEL HYPOTHETICAL 31.0 KD PROTEIN R107.2 IN CHRO... 86 7e-16
gb|AAG10448.1|AF279106_10 (AF279106) predicted kinase of P-loop ... 80 6e-14
gi|6324129 Ynl200cp [Saccharomyces cerevisiae] >gi|732194|sp|P40... 78 2e-13
sp|P96051|YFOL_STRTR HYPOTHETICAL 29.9 KD PROTEIN IN FOLD-PBP2B ... 74 3e-12
>pir||H75025 hypothetical protein PAB1144 - Pyrococcus abyssi (strain Orsay)
>gi|5459160|emb|CAB50646.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 484
Score = 968 bits (2474), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MVGSMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGG 60
MVGSMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGG
Sbjct: 1 MVGSMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGG 60
Query: 61 DGFVTARHLSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSL 120
DGFVTARHLSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSL
Sbjct: 61 DGFVTARHLSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSL 120
Query: 121 EEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKCDFAV 180
EEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKCDFAV
Sbjct: 121 EEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKCDFAV 180
Query: 181 TFQWDKEEYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENY 240
TFQWDKEEYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENY
Sbjct: 181 TFQWDKEEYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENY 240
Query: 241 YGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELSERV 300
YGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELSERV
Sbjct: 241 YGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELSERV 300
Query: 301 DAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGE 360
DAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGE
Sbjct: 301 DAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGE 360
Query: 361 FKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGG 420
FKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGG
Sbjct: 361 FKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGG 420
Query: 421 TGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKR 480
TGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKR
Sbjct: 421 TGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKR 480
Query: 481 ILEL 484
ILEL
Sbjct: 481 ILEL 484
>pir||F71210 hypothetical protein PH1950 - Pyrococcus horikoshii
>gi|3258394|dbj|BAA31077.1| (AP000007) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 767 bits (1959), Expect = 0.0
Identities = 366/480 (76%), Positives = 427/480 (88%)
Query: 4 SMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGF 63
+MK+EDVYIWD+NA+WLG+TP+QLMENAG+ VAR+IEE+FGK LK+AVFCGTGNNGGDGF
Sbjct: 3 TMKIEDVYIWDINARWLGVTPYQLMENAGASVARVIEEKFGKNLKIAVFCGTGNNGGDGF 62
Query: 64 VTARHLSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEF 123
V ARHLS+ENDVTVFLIG+E KIRSEEAKLNW+ILKNL+FVKIK+LKDSSQ+++L L EF
Sbjct: 63 VAARHLSYENDVTVFLIGEEVKIRSEEAKLNWNILKNLDFVKIKVLKDSSQIRELDLSEF 122
Query: 124 DVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKCDFAVTFQ 183
D+IVDALLGAGTRG+PREPI+SAIEKINEY GK KIVSIDLPSGYPS++RVK DFAVTFQ
Sbjct: 123 DIIVDALLGAGTRGKPREPIKSAIEKINEYSGKVKIVSIDLPSGYPSEIRVKADFAVTFQ 182
Query: 184 WDKEEYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENYYGA 243
WDKEE++DF R+I KIGYP+EL +L+GPAHVKFA+KRKGEHKGQNGK+LIIGGSENYYGA
Sbjct: 183 WDKEEFKDFKRIIAKIGYPKELKYLVGPAHVKFAYKRKGEHKGQNGKLLIIGGSENYYGA 242
Query: 244 PYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELSERVDAV 303
P LA A+ +LVDLV+LL P+ ARR++DP+LIVREV G N EHI+ ALEL E+VDA+
Sbjct: 243 PVLAASAAKHLVDLVFLLLPQNAARRVNDPDLIVREVDGLNFTPEHIKSALELVEKVDAI 302
Query: 304 VIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGEFKL 363
VIGPGIG +EETKEFV I++VEKP+V+DADGLKIIAE D LK ++ VLTPHAGEFKL
Sbjct: 303 VIGPGIGVREETKEFVKGIIERVEKPIVVDADGLKIIAEFKDILKGKEIVLTPHAGEFKL 362
Query: 364 LFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGGTGD 423
LFG K LVEK K+V +A+EI ILLKG YD++SDGKVWLYNKTGNRGMTTGGTGD
Sbjct: 363 LFGEKVPEDLVEKGKVVMRRAKEIGATILLKGKYDVISDGKVWLYNKTGNRGMTTGGTGD 422
Query: 424 VLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRILE 483
VLAG VG+FLALGN+ L+AA+AGAFL GF+GDLV EEKGEAFTA DVA KIP+ALK+I+E
Sbjct: 423 VLAGTVGAFLALGNKALKAAAAGAFLVGFAGDLVMEEKGEAFTARDVAEKIPIALKKIIE 482
>sp|Q58981|YF86_METJA HYPOTHETICAL PROTEIN MJ1586 >gi|2128065|pir||A64498 hypothetical
protein homolog MJ1586 - Methanococcus jannaschii
>gi|1592200|gb|AAB99605.1| (U67598) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 491
Score = 328 bits (831), Expect = 1e-88
Identities = 194/483 (40%), Positives = 296/483 (61%), Gaps = 38/483 (7%)
Query: 8 EDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTAR 67
+++ I D NA++LGI LMENAG V I++ + + +FCGTGNNGGDGFV AR
Sbjct: 33 KEMAIIDDNAEFLGIQKILLMENAGKAVYEEIKDIDAE--EFIIFCGTGNNGGDGFVVAR 90
Query: 68 HLSFENDVTVFLIGDETKIRSEEAKLNWSILKNL-EF--VKIKILKDSSQVKKLS---LE 121
HL + V LIG E++I++ EA+ N+ ILKNL EF ++I+ +K + +V +
Sbjct: 91 HLGKGD---VILIGKESEIKTYEARENFKILKNLAEFGNIRIREIKWAEEVNDIFERLKN 147
Query: 122 EFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAK---IVSIDLPSGYPSKVRVKCDF 178
+ VI+DA++G G +GE REP ++ ++KINE K ++S+D+ +G+ ++ D
Sbjct: 148 KKAVIIDAMIGTGVKGELREPFKTIVDKINELKQINKNIFVISVDVETGH-----LESDL 202
Query: 179 AVTFQWDKEEYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKR-KGEHKGQNGKILIIGGS 237
+TF K +D + ++ KIG P+E +++G +K KR HKGQNGK+LIIGGS
Sbjct: 203 TITFHKRKTINKD-NAIVKKIGIPKEAEYIVGWGDLKALRKRDSNSHKGQNGKVLIIGGS 261
Query: 238 ENYYGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELS 297
+++YGAP LAG A+ +VDLV +L+ +V +++ P I+ V GD L +H++ LE++
Sbjct: 262 KDFYGAPILAGLAALKIVDLVGILSVGKVIDKVNHPEFIMYRVEGDYLSSQHVDYTLEIA 321
Query: 298 ERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALK-NRKFVLTP 356
++ D VV+G G+G TK F+ EF+ K + +VIDAD +K+I D + + + ++ TP
Sbjct: 322 KKYDVVVLGNGLGANNRTKAFLNEFLAKYDGKVVIDADAIKVI--DYNNFEFSENYIFTP 379
Query: 357 HAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGM 416
H EF E + + E I I+LKG YDI+ + NKTGN G+
Sbjct: 380 HKREF-------------EYMGIDLDNIENIKSTIVLKGKYDIIFNANNLKINKTGNAGL 426
Query: 417 TTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPL 476
T GGTGDVLAG++G+ A+ NE +A GAF+ G++GDL+ +EKG +T LD+ KIP
Sbjct: 427 TKGGTGDVLAGLIGALFAV-NEAFLSACCGAFINGYAGDLLLKEKGYYYTPLDLIEKIPN 485
Query: 477 ALK 479
LK
Sbjct: 486 VLK 488
>pir||H69034 conserved hypothetical protein MTH1256 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622369|gb|AAB85745.1| (AE000892) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 519
Score = 303 bits (767), Expect = 4e-81
Identities = 195/497 (39%), Positives = 274/497 (54%), Gaps = 33/497 (6%)
Query: 5 MKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFV 64
MK D+ D+NA++LG+ LMENAG VA I G +VA+FCG G NGGDGFV
Sbjct: 20 MKPVDMAAADINAEYLGVPRLSLMENAGRAVAEEIGNAVDSG-RVAIFCGPGGNGGDGFV 78
Query: 65 TARHL-SFENDVTVFLIGDETKIRSEEAKLNWSILKNLE----FVKIKILKDSSQVKKLS 119
ARHL + +V V L+G +I SEEA +NW +L ++ + ++DSS++K
Sbjct: 79 AARHLLNMGFEVEVHLLGHPERIGSEEALVNWGVLGAMQPHPGGFSVDFVRDSSEIKPT- 137
Query: 120 LEEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSK------VR 173
+ DV+VDA+LG G RG REP RSAIE IN +A VS+D+PSG + +
Sbjct: 138 --DADVVVDAILGTGVRGSIREPSRSAIEIINR--SEAFRVSVDIPSGLNPETGAVEDIA 193
Query: 174 VKCDFAVTFQWDKEEYRDFDR------VIVKIGYPRELYHLIGPAHV-KFAFKRKGEHKG 226
V D VTF K+ + D V+ IG P +GP + + +R G HKG
Sbjct: 194 VSADLTVTFHRMKDGLKLADPAVTGEIVVRDIGIPPAAEIFMGPGDLLRIPSRRPGSHKG 253
Query: 227 QNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRIDD--PNLIVREVPGD 283
+NG++LIIGGS Y GAP +A KA+ D+V + P AR I P+LIVRE+ G
Sbjct: 254 ENGRVLIIGGSRQYSGAPAIAAKAALRAGADIVMVAAPGSAARAIRSLSPDLIVRELEGG 313
Query: 284 NLRGEHIELALELSERVDAVVIGPGIGTKEETKEF---VLEFIKKVEKPMVIDADGLKII 340
+ E ++ LEL+E+ D+V++G G G + T +E + ++EKP+V+DAD L+++
Sbjct: 314 YIGMESLDEILELAEKADSVLMGCGAGRETSTARTFMRAIEDLHEMEKPIVLDADALRLM 373
Query: 341 AEDLDALKNRKFVLTPHAGEFKLLFGVKPG--GSLVEKSKLVKEKAEEINGVILLKGAYD 398
+ D + R+ +TPH EF F +K E + + I G +LLKG D
Sbjct: 374 -DYSDVSEYRELTVTPHMAEFSSFFKLKSMIFNDFRESVSAFQSISSRIRGTVLLKGRID 432
Query: 399 IVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVY 458
++ G NKTG GMT GGTGD LAG+ ALG +AS AF+ G +G+L
Sbjct: 433 MIFQGDRLRLNKTGCPGMTVGGTGDALAGLTAGLRALGLSSFDSASLAAFINGMAGELAM 492
Query: 459 EEKGEAFTALDVANKIP 475
E G FTA D+ + IP
Sbjct: 493 ERHGNGFTASDMVDMIP 509
>gb|AAK42421.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 501
Score = 290 bits (735), Expect = 2e-77
Identities = 190/499 (38%), Positives = 282/499 (56%), Gaps = 31/499 (6%)
Query: 5 MKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVA-VFCGTGNNGGDGF 63
+ ++++ ++N+ LG++ LMENAG V I +RF KVA V+ G G GGDG
Sbjct: 2 ISVKEMRALEINSSALGVSTLLLMENAGRSVKDEIVKRFNVKDKVAYVYVGHGGKGGDGL 61
Query: 64 VTARHLSFEN-DVTVFLIGDETKIRSEEAKLNWSILKNLEF-VKIKILKDSSQVKKLSLE 121
V ARHL+ E VTV L+G+ + E+A LN ++++ +++ + + +KD ++K +S
Sbjct: 62 VAARHLADEGAKVTVILLGEN---KHEDAILNLNVIEEMDYSITLVEIKDMDELKPISA- 117
Query: 122 EFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVR-------V 174
D+++DA+LG G G+PREP RSAI+ N + K VSID+PSG + V
Sbjct: 118 --DILIDAMLGTGFSGKPREPFRSAIKAFN--NSKGFKVSIDVPSGINADTGEAYEDEYV 173
Query: 175 KCDFAVTFQWDKEEYR--DFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGEH--KGQNGK 230
K D VTF K +F+ V+ KIG P E +GP + + + + KG +G+
Sbjct: 174 KPDLVVTFHDIKPGLLKYNFNTVVTKIGIPVEAEIYVGPGDLIVNARSRPYYSKKGDSGR 233
Query: 231 ILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVREVPGDNLRG 287
+L+IGGS + GAP LA + DLVY+ +PE AR I P+LI ++ G N+
Sbjct: 234 VLVIGGSYTFSGAPTLAALGALRAGADLVYVASPEDTARIIAGYSPDLITIKLRGKNISP 293
Query: 288 EHIELALELSERVDAVVIGPGIGTKEETKE---FVLEFIKKVEKPMVIDADGLKIIAEDL 344
++ E +R D VVIGPG+G EET E ++ ++K+ K VIDAD LK I+
Sbjct: 294 DNFEELKLWIDRADVVVIGPGMGLAEETIEASKLIVNYLKEKNKLAVIDADALKAIS-GF 352
Query: 345 DALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGK 404
D +N V+TPHAGEFK+ FG +P ++ ++ V A++ +LLKG DI+SDGK
Sbjct: 353 DLYENA--VITPHAGEFKIFFGEEPDKNIRDRISQVITYAKKCKCTVLLKGYVDIISDGK 410
Query: 405 VWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEA 464
+ NKTGN GMT GG+GD L G+ + +A EP AA G F+ +G L Y G
Sbjct: 411 RFKLNKTGNPGMTVGGSGDTLTGITATLMAQKIEPFIAAYLGVFINSLAGTLAYNRLGAH 470
Query: 465 FTALDVANKIPLALKRILE 483
T D+ N+IP + L+
Sbjct: 471 LTPTDIINEIPNVINNPLD 489
>gi|11498457 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483058|pir||C69356 conserved hypothetical protein
AF0851 - Archaeoglobus fulgidus
>gi|2649751|gb|AAB90387.1| (AE001045) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 464
Score = 277 bits (700), Expect = 3e-73
Identities = 195/489 (39%), Positives = 278/489 (55%), Gaps = 53/489 (10%)
Query: 9 DVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARH 68
D+ I D N ++ G++ LMENAG GVA + +RF +G KV +F G+GNNGGDGFV ARH
Sbjct: 8 DMQILDTNCEYFGLSRMLLMENAGKGVAEEVMKRFYEG-KVQIFAGSGNNGGDGFVAARH 66
Query: 69 LSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFD--VI 126
L DV +FL+ +K ++E A +KNLE + K VK+ EE D ++
Sbjct: 67 LK-GFDVEIFLL---SKPKTELA------IKNLEICR----KAGFPVKEGLPEEIDADIV 112
Query: 127 VDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPS-----KVRVKCDFAVT 181
+DA+LG G RG REP +A++ INE A V++D+P+G + VK D VT
Sbjct: 113 IDAMLGTGVRGRLREPYSTAVKMINE--SDAFKVAVDVPTGLDPDSGSYEEAVKADLTVT 170
Query: 182 FQWDKEEYRDFDRV-----IVKIGYPRELYHLIGPAHVKFAFKR-KGEHKGQNGKILIIG 235
F K V + IG P +L GP V F++KR + HKG +GK+L++G
Sbjct: 171 FHKAKPGLAKAREVCGEVAVKDIGIPESFENLCGPGDVAFSYKRYEDAHKGVHGKVLVVG 230
Query: 236 GSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRIDD--PNLIVREVPGDNLRGEHIEL 292
G + Y GAP LA A+ Y D+V P + + + PNLIVR V + + +++E
Sbjct: 231 GGD-YTGAPALASLAALYAGADIVTTAVPMAIRKVVASFSPNLIVRGVGEERIEMKNLEE 289
Query: 293 ALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDAL-KNRK 351
EL +R D VV G G+G E KE V E +K +K V+DA G+ +D++ +N +
Sbjct: 290 LEELVKRHDVVVAGMGVGENPEFKEVVEELLKSCKKA-VLDAQGI------VDSVPENCE 342
Query: 352 FVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKT 411
+LTPH GEF +FG + V+K+ L K KA VILLKG D+++DG N++
Sbjct: 343 CILTPHRGEFGRVFG----DTEVQKAAL-KAKA-----VILLKGREDVITDGSRVKVNRS 392
Query: 412 GNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVA 471
GN GMT GGTGDVLAG+ +FL ++ +A A AFL G +GD+ +E+ G +TA D+
Sbjct: 393 GNAGMTVGGTGDVLAGIAAAFLC-NDDAFHSACAAAFLNGLAGDVCFEKFGYNYTATDLV 451
Query: 472 NKIPLALKR 480
IP A+ R
Sbjct: 452 KAIPEAILR 460
>gb|AAG19626.1| (AE005051) Vng1272c [Halobacterium sp. NRC-1]
Length = 472
Score = 257 bits (649), Expect = 2e-67
Identities = 177/478 (37%), Positives = 244/478 (51%), Gaps = 29/478 (6%)
Query: 14 DLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFEN 73
D NA LG+ QLME++G V R ++ G VA+ G GNNGGD F AR L +
Sbjct: 5 DRNAAALGVPRAQLMESSGHAVGRAVKRVADPGASVAIVAGRGNNGGDAFAAARFLD-DY 63
Query: 74 DVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKK---LSLEEFDVIVDAL 130
V+V L+G I ++ NW L+ + D++ V+ L+L++ DV+VDAL
Sbjct: 64 AVSVSLLGRPESINDRISRANWDALQAGGY-------DTTTVRDAHALALDDPDVVVDAL 116
Query: 131 LGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKV------RVKCDFAVTFQW 184
LG G G PREP +AIE+IN A V++D+PSG + V D VTF
Sbjct: 117 LGTGISGPPREPEATAIERINATD--APTVAVDVPSGLDADTGATPGSAVDADRVVTFHD 174
Query: 185 DKEEYRDFDRVIVK-IGYPRELYHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENYYGA 243
D D V V IG P ++GP + + HKG G +L+IGG Y GA
Sbjct: 175 TTPGLADHDHVTVADIGIPEAAETVVGPGDLLGVDRDPHGHKGDAGSVLVIGGGP-YTGA 233
Query: 244 PYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVREVPGDNLRGEHIELALELSERV 300
P L +A+ DLV L P+ VA + D IV V G L EH+ L +E
Sbjct: 234 PALCAQAALRAGADLVRLAVPDAVAAEVQGFDETFIVDSVVGTRLVEEHVPDLLARAEDA 293
Query: 301 DAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGE 360
DAVVIGPG+G + T+ V F+ E V+DAD L + D + V TPH GE
Sbjct: 294 DAVVIGPGLGDADTTQAAVAAFLAAFEGRAVVDADALTAVP---DVETDATLVCTPHRGE 350
Query: 361 FKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGG 420
+ + G GS + V+ A E+ +L+ GA D++SDG N++G GMT GG
Sbjct: 351 LQAMGGPTVDGSQPSRDA-VEGFAAELGQTLLVTGARDVLSDGDTTRVNRSGTPGMTVGG 409
Query: 421 TGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLAL 478
TGDVLAG + LA P++AASA A+ TG +G+ E +G A D+ + +P A+
Sbjct: 410 TGDVLAGTAAAMLAT-QPPIQAASAAAYATGGAGERAAEARGHGLLATDICDALPAAI 466
>pir||C72317 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981459|gb|AAD36003.1|AE001756_6 (AE001756)
conserved hypothetical protein [Thermotoga maritima]
Length = 490
Score = 253 bits (639), Expect = 4e-66
Identities = 187/502 (37%), Positives = 262/502 (51%), Gaps = 49/502 (9%)
Query: 14 DLNAKWLGITPFQLMENAGSGVARIIEERFGK--GLKVAVFCGTGNNGGDGFVTARHL-S 70
+L K G+ LME AG V +EE G + V CG GNNGGDGFV AR+L
Sbjct: 6 ELTIKEYGVDSRILMERAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLG 65
Query: 71 FENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDAL 130
DV V +G K ++ + + N+ + K ++ Q + L EFDV+VDA+
Sbjct: 66 VVKDVLVVFLG---KKKTPDCEYNYGLYKKFGGKVVE------QFEPSILNEFDVVVDAI 116
Query: 131 LGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPS------KVRVKCDFAVTFQW 184
G G RGE I +N+ GK +VS+D+PSG S + VK D VTF
Sbjct: 117 FGTGLRGEITGEYAEIINLVNK-SGKV-VVSVDVPSGIDSNTGKVLRTAVKADLTVTFGV 174
Query: 185 DKEEY-----RDFDRV--IVKIGYPRELYHLIGPAHVKFAFKR-------KGEHKGQNGK 230
K + RD + IG+P L + I + R + HKG GK
Sbjct: 175 PKIGHILFPGRDLTGKLKVANIGHPVHLINSINRYVITREMVRSLLPERPRDSHKGTYGK 234
Query: 231 ILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTP--ERVARRIDDPNLIVREVPGDNLRG 287
+LII GS Y GAP L+G S + LV L P + + P LI VP D +G
Sbjct: 235 VLIIAGSRLYSGAPVLSGMGSLKVGTGLVKLAVPFPQNLIATSRFPELI--SVPIDTEKG 292
Query: 288 ----EHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAED 343
++++ LELS+ VD V IGPG+G E +EFV EF+K +EKP VIDAD + ++ D
Sbjct: 293 FFSLQNLQECLELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINVL--D 350
Query: 344 LDALKNRKF--VLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVS 401
LK RK VLTPH GE L K G + +L +E A+E + V++LK A IV+
Sbjct: 351 TSVLKERKSPAVLTPHPGEMARLVK-KTVGDVKYNYELAEEFAKENDCVLVLKSATTIVT 409
Query: 402 DGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEK 461
DG+ L+N TGN G++ GG+GDVL G++ F+A G PL A++ +L GF+ +L +E+
Sbjct: 410 DGEKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPLEASTVSVYLHGFAAEL-FEQD 468
Query: 462 GEAFTALDVANKIPLALKRILE 483
TA ++ IP A++R+ E
Sbjct: 469 ERGLTASELLRLIPEAIRRLKE 490
>emb|CAC12571.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 457
Score = 231 bits (584), Expect = 1e-59
Identities = 154/480 (32%), Positives = 255/480 (53%), Gaps = 38/480 (7%)
Query: 14 DLNAKWLGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFEN 73
DLN ++L T + LM+NAG VA + + + V V GTGNNGGD V LS +
Sbjct: 7 DLNYEYLYGTTYPLMKNAGKAVADAVMKNYPDARTVCVVAGTGNNGGDAIVAGSILSAKY 66
Query: 74 DVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGA 133
DV V ++ T++RSE A+ S E+ I D + + DVI+D + G
Sbjct: 67 DVRVLIV---TEVRSELARRALS-----EYGGRVIGLDGME----ECMKCDVIIDGIFGV 114
Query: 134 GTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKCDFAVTFQWDKEEYRDFD 193
G G+P++P RS IE IN + +VS+D+PSG ++ VK + VTF +K +
Sbjct: 115 GISGDPKDPYRSVIENINR--SCSHVVSVDIPSGLGTRYAVKPEITVTFTMEKYGMNQDN 172
Query: 194 R---VIVKIGYPRELYHLIGPAHVKFAFKRK-GEHKGQNGKILIIGGSENYYGAPYLAGK 249
++ IG P ++ GP + + K HKG NG + I+GG E ++G+ +A
Sbjct: 173 SGKIIVADIGIPPDVRKYAGPGDLLYYPKPDPSSHKGMNGTLAIVGGWE-FHGSSVIAAL 231
Query: 250 ASSYL-VDLVYLLTPERVARRID--DPNLIVREVPGDNLRGEHIELALELSERV--DAVV 304
A+ + +DLV + R + + DP +IVR+V E ++ +LSE A++
Sbjct: 232 AAERIGLDLVRVFVSPRNYQIVSGYDPGIIVRQV-------EKLD-EKKLSEIYGNSAIL 283
Query: 305 IGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGEFKLL 364
+GPG+G ++ E + + PMV+DAD L + + RK ++TPH GEF+ +
Sbjct: 284 LGPGMGKGDDAMEAARKIVSDSRVPMVVDADALDAVGAYSGSFAGRKIIITPHKGEFRRI 343
Query: 365 FGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGGTGDV 424
G +P E++ + + + + +++LKG D++++G+ Y K GN MT GGTGD+
Sbjct: 344 SGFEP----TEENAISYARKKGL--IVVLKGQVDVITNGEEVHYAKGGNARMTMGGTGDL 397
Query: 425 LAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRILEL 484
LAG++ +FLA +P+RA G +L G+ Y + G +T D+ ++IP + + +++
Sbjct: 398 LAGIISAFLARSVDPMRACLMGTYLNKALGEAAYSKHGYWYTVTDMISEIPGVMGKYIKI 457
>pir||G72464 hypothetical protein APE2362 - Aeropyrum pernix (strain K1)
>gi|5106064|dbj|BAA81375.1| (AP000064) 510aa long
hypothetical protein [Aeropyrum pernix]
Length = 510
Score = 200 bits (503), Expect = 3e-50
Identities = 162/487 (33%), Positives = 245/487 (50%), Gaps = 50/487 (10%)
Query: 4 SMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFG--KGLKVAVFCGTGNNGGD 61
++ ED+ +++NA+ LG++ LMENAG+ VA ++E G +G KVAV G G NGGD
Sbjct: 26 AISTEDMRAFEINAENLGVSIELLMENAGNAVAGVLECLLGGLQGAKVAVLAGKGGNGGD 85
Query: 62 GFVTARHLSFEND-VTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSL 120
G AR L+ V + L +++ A+ ++LK +E ++++L+ + L L
Sbjct: 86 GIAAARRLAARGARVEIHLTHPRGEVKHPAAR---TMLKGVEASRVEVLEPGAP-GWLDL 141
Query: 121 EEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKV------RV 174
D +VDALLG G +G R +++A E N+ G +S+D+P+G V
Sbjct: 142 GGVDAVVDALLGIGVKGGLRGSVKAAAEAYNKAGGLK--ISVDVPTGVDPDTGDAVEGAV 199
Query: 175 KCDFAVTFQWDKE-------EYRDFDRVIVKIGYPRELYHLIGPAHVKFAFKRKGE--HK 225
+ D+ V+ K+ + + +IG P + GP V R+ HK
Sbjct: 200 RSDYTVSMHKPKKGLFKGAAPLYAGEVLTAEIGVPWAAEYYAGPGDVAARIPRRPRDAHK 259
Query: 226 GQNGKILIIGGSENYYGAPYLAGKAS-SYLVDLVYLLTPERVARRIDDPNLIVREVPGDN 284
G G++L++GGS Y GAP LA A+ + VDLVYL +P + P ++ R
Sbjct: 260 GVGGRVLVVGGSSEYVGAPILAALAAYAAGVDLVYLASPFSREAALARPEIVPR------ 313
Query: 285 LRGEHIELALELSERVDAVVIGPGIGTK-EETKEFVLEFIKKVEKPMVIDADGLKIIAED 343
+E A + ERV AVV GPG+G + E+ VL+ +K P V+DADGLK +A
Sbjct: 314 ----RMEEASRVVERVHAVVAGPGMGGEGEDLLWEVLDAARKRGVPAVVDADGLKALARR 369
Query: 344 LDALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIV--S 401
D L VLTPH GE KLL GG + + +E A ++K D V
Sbjct: 370 GDRLWGGA-VLTPHRGEAKLLL----GGEDLPPLRAAREIAARYGATTIVKAPVDAVCSP 424
Query: 402 DGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLA------LGNEPLRAASAGAFLTGFSGD 455
+G+ + G M+ GGTGDVLAGV+ FLA L +PL A+A + G +G+
Sbjct: 425 EGRC-RESPWGAPEMSVGGTGDVLAGVLAGFLARRRALGLDPDPLNTAAAALYTVGKAGE 483
Query: 456 LVYEEKG 462
+ E+G
Sbjct: 484 DLATEEG 490
>pir||F70418 conserved hypothetical protein aq_1365 - Aquifex aeolicus
>gi|2983781|gb|AAC07340.1| (AE000736) hypothetical
protein [Aquifex aeolicus]
Length = 499
Score = 189 bits (474), Expect = 8e-47
Identities = 156/494 (31%), Positives = 242/494 (48%), Gaps = 49/494 (9%)
Query: 20 LGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFEN-DVTVF 78
+GI LMENA GV I + F + V G GNNGGDG ARHL V +F
Sbjct: 20 IGIPSLVLMENASKGVFENIRKYFPDAKNILVVAGKGNNGGDGLALARHLYLNGFSVDIF 79
Query: 79 LIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRGE 138
L E K +AK ILK + +K KK +E+D+IVDA+ G G +
Sbjct: 80 LAFGEVK---GDAKTQLEILKKIGIEPLK--------KKPDFKEYDLIVDAIFGTGFQPP 128
Query: 139 PREPIRSAIEKINEYHGKAKIVSIDLPSGYPS------KVRVKCDFAVTFQWDKEEYRDF 192
+ + + I++IN + IVSID+PSG + + VK D VTFQ+ K + +
Sbjct: 129 VKGEVANLIKEIN--NSSVPIVSIDIPSGLSADTGESFEPSVKADLTVTFQFPKICHYLY 186
Query: 193 DRV-------IVKIGYPREL-----YHLIGPAHVKFAFKRKGEHKGQNGKILIIGGSENY 240
+V I P L L+ + +K + +K + G +L++GGS
Sbjct: 187 PAAKKCGKVEVVDISIPEFLAKDVKRDLLRKSDLKPYKREPDTYKTKEGSVLLVGGSVGK 246
Query: 241 YGAPYLAGKASSYL-VDLVYLLTPERVARRIDDPNLIVREVP-----GDNLRGEHIELAL 294
GA ++ KA+S LV + P + + +L++ E+ L +E L
Sbjct: 247 TGAVIMSAKAASRAGAGLVTVGIPRELNPIFE--SLLIEEMSLPLSGTSRLSVFCVEEIL 304
Query: 295 ELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAE--DLDALKNRKF 352
EL +R A+ IG G+ EE ++ V+ ++K EKP++IDADG+ +A+ D LK+R+
Sbjct: 305 ELKDRFHALGIGMGMDRYEEGQDIVISLLEKWEKPILIDADGINNLADYGDYTPLKDREI 364
Query: 353 --VLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVS--DGKVWLY 408
VLTPH GEF L G + + +E +E+ ++LKGA ++S DG+ +L+
Sbjct: 365 PAVLTPHIGEFSRLTGYDTKTITYNQIDIAQEFSEKNRCYLVLKGARTVISTPDGRAYLF 424
Query: 409 NKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEE-KGEAFTA 467
G + GGTGDVLAG++ + +A + A G +L G +G + ++ E+ A
Sbjct: 425 -ADGTPALAKGGTGDVLAGILTALIA-KMDTEEALKLGVYLHGLAGKVAEKKLHTESVKA 482
Query: 468 LDVANKIPLALKRI 481
DV +P A + I
Sbjct: 483 TDVTESLPEAFREI 496
>sp|P31806|YJEF_ECOLI HYPOTHETICAL 54.7 KD PROTEIN IN PSD-AMIB INTERGENIC REGION (URF1)
>gi|1361187|pir||S56392 hypothetical 54.7K protein
(psd-amiB intergenic region) - Escherichia coli
>gi|537008|gb|AAA97063.1| (U14003) yjeF gene product
[Escherichia coli] >gi|1790609|gb|AAC77124.1| (AE000489)
orf, hypothetical protein [Escherichia coli K12]
Length = 515
Score = 168 bits (421), Expect = 1e-40
Identities = 148/473 (31%), Positives = 216/473 (45%), Gaps = 65/473 (13%)
Query: 20 LGITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFENDVTVFL 79
LG+T ++LM AG ++ + V CG GNNGGDG+V AR L
Sbjct: 34 LGLTLYELMLRAGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLL 93
Query: 80 IGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSL---EEFDVIVDALLGAGTR 136
+ K EEA L + L ++ ++ E D+IVDALLG G R
Sbjct: 94 AQESDKPLPEEAAL----------AREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLR 143
Query: 137 GEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVR------VKCDFAVTFQWDKE--- 187
PRE I I+ N + A IV++D+PSG ++ + D +TF K
Sbjct: 144 QAPRESISQLIDHANSH--PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLL 201
Query: 188 --EYRD------FDRV-----------IVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQN 228
+ RD FD + ++ +L H + P +R HKG +
Sbjct: 202 TGKARDVTGQLHFDSLGLDSWLAGQETKIQRFSAEQLSHWLKP-------RRPTSHKGDH 254
Query: 229 GKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLT-PERVARRIDD-PNLIVREVPGDNL 285
G+++IIGG GA + G+A+ LV +LT E +A + P L+V E+ D+L
Sbjct: 255 GRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSL 314
Query: 286 RGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLD 345
E E D VVIGPG+G +E K+ L+ ++ KPM+ DAD L ++A + D
Sbjct: 315 T--------ESLEWADVVVIGPGLGQQEWGKK-ALQKVENFRKPMLWDADALNLLAINPD 365
Query: 346 ALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKV 405
NR V+TPH GE L G ++ K + GV +LKGA +V+
Sbjct: 366 KRHNR--VITPHPGEAARLLGCSVAEIESDRLHCAKRLVQRYGGVAVLKGAGTVVAAHPD 423
Query: 406 WL-YNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLV 457
L GN GM +GG GDVL+G++G+ L P AA AG G + D++
Sbjct: 424 ALGIIDAGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHGAAADVL 476
>pir||H82489 conserved hypothetical protein VCA0191 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657583|gb|AAF96104.1|
(AE004359) conserved hypothetical protein [Vibrio
cholerae]
Length = 494
Score = 145 bits (363), Expect = 9e-34
Identities = 137/473 (28%), Positives = 213/473 (44%), Gaps = 54/473 (11%)
Query: 21 GITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTA---RHLSFENDVTV 77
G+ F LME AG V I ++ + CG GNNGGDG++ A RH+ DVTV
Sbjct: 29 GLELFHLMERAGQAVFTIAFAQYPTSHHWLICCGGGNNGGDGYIVAVLARHMGI--DVTV 86
Query: 78 FLIGDETKIRSE--EAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGT 135
+ +GD K+ ++ A W L + + +S+ DVI+DAL G G
Sbjct: 87 WQLGDPEKLPADAHRAYQQWKELGGAVYAPQSEVPEST----------DVIIDALFGIGL 136
Query: 136 RGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVR------VKCDFAVTFQWDKE-- 187
+ R + +E +N+ GK IV++D+PSG + +K V+ K+
Sbjct: 137 KEVLRPQVVPLVELLNQ-SGKP-IVAVDVPSGLCADTGQVMGTCIKAQHTVSLIGLKQGL 194
Query: 188 ------------EYRDF--DRVIVKIGYPRELYHLIGPA-HVKFAFKRKGEHKGQNGKIL 232
Y + V + P L + G H ++ HKGQNGK L
Sbjct: 195 VTGQARCYVGTLHYAGLGVEEVFAQHNTP-SLVSIDGKLRHSLLPPRQACTHKGQNGKAL 253
Query: 233 IIGGSENYYGAPYLAGKASSYL-VDLVYLLT-PERVARRIDDPNLIVREVPGDNLRGEHI 290
I+GG+E GA L A + L +T P+ V + I EV + +H
Sbjct: 254 IVGGNEGMGGALILCASACARSGAGLSAAMTHPDNVTAMLT----ITPEVMSTSWNKQH- 308
Query: 291 ELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNR 350
L E E DA+ +GPG+G + ++ +++ + ++ P V DAD L +A + R
Sbjct: 309 -LFEERIEWCDALALGPGLGRDAQAQQ-IMQRLSSLKVPKVWDADALYFLAHNPSYDAQR 366
Query: 351 KFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSDGKVWLYNK 410
++TPH E L G + ++ +++ + GV++LKGA +V DGK
Sbjct: 367 --IITPHPVEAARLLGCEVEEVEQDRFAAIRQLQQRYGGVVVLKGAGTLVDDGKEIAVCL 424
Query: 411 TGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGE 463
GN GM +GG GDVL G++ + LA AA G +L + DL + G+
Sbjct: 425 QGNPGMASGGMGDVLTGIIVALLAQKIPLADAAKLGVWLHSSAADLNTKSHGQ 477
>pir||A83029 conserved hypothetical protein PA4949 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951229|gb|AAG08334.1|AE004907_12 (AE004907)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 502
Score = 130 bits (323), Expect = 4e-29
Identities = 132/483 (27%), Positives = 211/483 (43%), Gaps = 46/483 (9%)
Query: 14 DLNAKWL--GITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSF 71
DL+A+ + G F+LM+ A R + R+ + + V G GNN GDG++ A
Sbjct: 22 DLDARLIAAGTPGFELMQRAAHAAWRALRRRWPEAAALTVLAGHGNNAGDGYLIAALAQR 81
Query: 72 EN-DVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDAL 130
V V + ++ + A+ + + L +++ S+ L V+VDAL
Sbjct: 82 AGWRVRVLAVAAPQRLAGDAAQAHAAAL-----ATGVVVEPWSECAVLE----GVVVDAL 132
Query: 131 LGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKV------RVKCDFAVTFQW 184
LG G G REP AI N ++++D+PSG + ++ D VTF
Sbjct: 133 LGTGLAGAVREPFAQAIRLANA--ADLPVLAVDIPSGLSADTGAVLGEAIRADLTVTFIG 190
Query: 185 DKEEYRD-----------FDRV----IVKIGYPRELYHLIGPAHVKFAFKRKGEHKGQNG 229
K FD + +V G + L A A + + HKG G
Sbjct: 191 LKIGLFTGEAPARVGELVFDELGSDAVVLQGLQPRAHRLARNALPSLAARPRTAHKGLFG 250
Query: 230 KILIIGGSENYYGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRG-E 288
+L++GG GA LA A S L L++ A R++ ++ P G
Sbjct: 251 HLLVVGGDTGMGGAVLLA--AESALRCGAGLVS---AATRVEHVPALLSRCPEVMAHGVA 305
Query: 289 HIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALK 348
L L+ER +V+GPG+G + + +L ++ P V DAD L ++A +
Sbjct: 306 SANQLLALAERASVLVLGPGLGQRAWGRS-LLSAVRSRPLPQVWDADALNLLALEPVGAG 364
Query: 349 NRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVS--DGKVW 406
R ++LTPH GE L G ++ E A V++LKGA +V+ DG++
Sbjct: 365 PRTWILTPHPGEAARLLGRSTAEVQADRPAAALELARRYQAVVVLKGAGSLVAAPDGRLA 424
Query: 407 LYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGD-LVYEEKGEAF 465
+ ++ G+ M G GDVL+G+ G+ LA E AA +L +G+ L + +G A
Sbjct: 425 VCSQ-GHPAMAGAGLGDVLSGITGALLAQRVEAFEAACLAVWLHAAAGERLGAQGRGLAA 483
Query: 466 TAL 468
T L
Sbjct: 484 TDL 486
>pir||S41739 hypothetical protein - Escherichia coli >gi|304912|gb|AAA20095.1|
(L19346) urf1 [Escherichia coli]
Length = 377
Score = 125 bits (310), Expect = 1e-27
Identities = 113/358 (31%), Positives = 167/358 (46%), Gaps = 52/358 (14%)
Query: 132 GAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVR------VKCDFAVTFQWD 185
G G R PRE I I+ N + A IV++D+PSG ++ + D +TF
Sbjct: 1 GTGLRQAPRESISQLIDHANSH--PAPIVAVDIPSGLLAETGATPGAVINADHTITFIAL 58
Query: 186 KE-----EYRD------FDRV-----------IVKIGYPRELYHLIGPAHVKFAFKRKGE 223
K + RD FD + ++ +L H + P +R
Sbjct: 59 KPGLLTGKARDVTGQLHFDSLGLDSWLAGQETKIQRFSAEQLSHWLKP-------RRPTS 111
Query: 224 HKGQNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLT-PERVARRIDD-PNLIVREV 280
HKG +G+++IIGG GA + G+A+ LV +LT E +A + P L+V E+
Sbjct: 112 HKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLVRVLTRSENIAPLLTARPELMVHEL 171
Query: 281 PGDNLRGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKII 340
D+L E E D VVIGPG+G +E K+ L+ ++ KPM+ DAD L ++
Sbjct: 172 TMDSLT--------ESLEWADVVVIGPGLGQQEWGKK-ALQKVENFRKPMLWDADALNLL 222
Query: 341 AEDLDALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIV 400
A + D NR V+TPH GE L G ++ K + GV +LKGA +V
Sbjct: 223 AINPDKRHNR--VITPHPGEAARLLGCSVAEIESDRLHCAKRLVQRYGGVAVLKGAGTVV 280
Query: 401 SDGKVWL-YNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLV 457
+ L GN GM +GG GDVL+G++G+ L P AA AG G + D++
Sbjct: 281 AAHPDALGIIDAGNAGMASGGMGDVLSGIIGALLGQKLSPYDAACAGCVAHGAAADVL 338
>pir||T35571 hypothetical protein SC6G4.20c SC6G4.20c - Streptomyces coelicolor
>gi|3449254|emb|CAA20398.1| (AL031317) SC6G4.20c,
unknown, len: 485 aa; similar to hypothet ical proteins
from many organisms e.g. Y115_MYCTU MTCY77.05 C
(Rv3433c) (473 aa), fasta scores; opt: 563 z-score:
730.1 E(): 0, 48.5% identity in 489 aa overlap
[Streptomyces coelicolor A3>
Length = 485
Score = 123 bits (307), Expect = 3e-27
Identities = 147/492 (29%), Positives = 214/492 (42%), Gaps = 72/492 (14%)
Query: 27 LMENAGSGVARIIEERFGK------GLKVAVFCGTGNNGGDGFVTARHLSFEN-DVTVFL 79
LM+ A +G+A + + G +V + G+G+NGGD L+ VT L
Sbjct: 26 LMQRAAAGLAAACAQVLARVAGRVYGSRVVLLVGSGDNGGDALYAGARLARRGAGVTAVL 85
Query: 80 IGDETKIRSEEAKLNWSILKNLEFVKIKILKD--SSQVKKLSLEEFDVIVDALLGAGTRG 137
+ + + + L L ++ + + ++L + D+++D ++G G G
Sbjct: 86 LAPD--------RAHGGGLTALRRAGGRVAEGGPAGSAEEL-IARADLVLDGIVGIGGSG 136
Query: 138 EPRE---PIRSAIEKINEYHGKAKIVSIDLPSGYPS---KVR---VKCDFAVTFQWDK-- 186
R+ P+ A + +A +V++DLPSG + +VR V+ D VTF K
Sbjct: 137 GLRKEAGPLADAAAR-----SRAAVVAVDLPSGVDADTGRVRGDVVRADLTVTFGTHKPG 191
Query: 187 ------EEYRDFDRVIVKIGYP-----RELYHLIGPAHVKFAFKRKGEH-KGQNGKILII 234
EY R +V IG P EL L P + GE K + G + I
Sbjct: 192 LLIDPAREYAGSVR-LVDIGLPLPGEAAELEALQHPDVARLLPVPAGESDKYRRGVVGIA 250
Query: 235 GGSENYYGAPYLA-GKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELA 293
GS Y GA LA A V + P A P +V + G G
Sbjct: 251 AGSARYPGAAVLAVAGALRGGAGAVRYVGPAGDAVIARFPETLVSD-QGPKRAG------ 303
Query: 294 LELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFV 353
RV A V+GPG G T VL E P++IDADGL++ D + +
Sbjct: 304 -----RVQAWVVGPGAGDDAATVAQVLA----AEVPVLIDADGLRLADADAVRARTAPTL 354
Query: 354 LTPHAGEFKLLFGVKPGGSLVEKSKL--VKEKAEEINGVILLKGAYDIVSDGKVW--LYN 409
+TPHAGE L GV G VE ++L V+E A +LLKG+ +V+ K N
Sbjct: 355 MTPHAGEAAALLGV--GREEVEAARLDSVRELAARYGATVLLKGSTTLVARAKGGPVRVN 412
Query: 410 KTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALD 469
TG + T G+GDVL+G+ GS LA G + A S GA+L G +G E G A D
Sbjct: 413 ATGTSWLATAGSGDVLSGLAGSLLAAGLSAVDAGSVGAYLHGLAGRFAAE--GAPAGAHD 470
Query: 470 VANKIPLALKRI 481
VA IP A + +
Sbjct: 471 VAAAIPRAWRDV 482
>pir||B82765 conserved hypothetical protein XF0757 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105649|gb|AAF83567.1|AE003917_1 (AE003917)
conserved hypothetical protein [Xylella fastidiosa]
Length = 473
Score = 122 bits (304), Expect = 7e-27
Identities = 127/463 (27%), Positives = 194/463 (41%), Gaps = 45/463 (9%)
Query: 27 LMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFENDVTVFLIGDETKI 86
LM+ AG ++ +R+ +V V CGTGNNGGDG+V A G + ++
Sbjct: 8 LMQRAGRAAWDLLRQRWPDARQVLVACGTGNNGGDGYVLA--------CLAHRAGWQVQV 59
Query: 87 RSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRGEPREPIRSA 146
+ S+L + + LE DV+VDAL G G P +
Sbjct: 60 VHLPGRGPASLLAQRAYDAYLAAGGQVMLFSGGLETADVLVDALFGIGLNRPLDVPTQGL 119
Query: 147 IEKINEYHGKAKIVSIDLPSGY----------PSKVRVKCDFAVT---FQWDKEEYRDFD 193
I +N ++++D+PSG P V F V +
Sbjct: 120 INALNA--AGRPVLALDVPSGVDAERGAVFGTPVYAHVTLQFIVPHVGLYTGPALEAVGE 177
Query: 194 RVIVKIGYPRELYHLIGPAHVK---------FAFKRKGEHKGQNGKILIIGGSENYYGAP 244
RV+ + P L + P + F +R+ HKG+ G++L +GG+ GA
Sbjct: 178 RVLAALDVPPALRDALAPCAERWGSQRLASRFRPRRRNSHKGEFGRVLCVGGNWGSGGAI 237
Query: 245 YLAGKASSYL-VDLVYLLTPE-RVARRIDD-PNLIVREVPGDNLRGEHIELALELSERVD 301
L+ +A+ +V++ T E VA + P + R V G EL + L D
Sbjct: 238 MLSAEAALRSGAGVVHVATREAHVAPLLARCPETMPRGVAGS------AEL-MPLLAAAD 290
Query: 302 AVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLTPHAGEF 361
V +GPG+G ++ + +L +VIDAD L ++A L +LTPH GE
Sbjct: 291 VVALGPGLG-QDPWGQALLAATLDSGCALVIDADALNVLAAAPRPLPPGA-ILTPHPGEA 348
Query: 362 KLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVS-DGKVWLYNKTGNRGMTTGG 420
L G ++ + A V++LKGA +++ G + GN GM G
Sbjct: 349 GRLLGCTTAQVQADRRAAAQALAARFAAVVVLKGAGSLIAAPGCLPCVIDAGNPGMAVAG 408
Query: 421 TGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGE 463
GDVL GV+ + A G+ AA GA L +GDLV + GE
Sbjct: 409 MGDVLTGVIAALRAQGDSVFDAALFGALLHAAAGDLVARDGGE 451
>emb|CAB94036.1| (AL358652) conserved hypothetical protein [Leishmania major]
Length = 560
Score = 122 bits (303), Expect = 9e-27
Identities = 146/541 (26%), Positives = 221/541 (39%), Gaps = 95/541 (17%)
Query: 11 YIWDLNAKWL-----------GITPFQLMENAGSGVARIIEERFGKGLKVAVFCGTGNNG 59
Y+W +A WL I LME AG + + + G+GNNG
Sbjct: 22 YVW--SAAWLRDAEPAAAASENIDLSGLMERAGRAAYDVFANLYTSQKHWLILVGSGNNG 79
Query: 60 GDGFVTARHLSFENDVTVFLIGDETK---IRSEEAKLNWSILKNLEFVKIKILKDSSQVK 116
GDG+V ARH + L +K + A+ W + E S
Sbjct: 80 GDGYVIARHAREAGKIVTVLRMPHSKPLPTEAASAQHAWKAVGGTE-------STMSPGA 132
Query: 117 KLSLE-EFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVR-- 173
L L + D+IVD LLG G G PRE I IN V+ID+PSG ++
Sbjct: 133 PLQLPADVDLIVDGLLGTGICGPPREQYADVIRHINGL--PVPRVAIDIPSGLNAETGEA 190
Query: 174 ----VKCDFAVTFQWDKE-----EYRDFDRVI----------------VKIGYPRELYHL 208
VK D TF K + +D+ + +++ R +
Sbjct: 191 AGACVKADHTATFICLKPGLLTGQAKDYVGQLHYRSLGLEDWMTAPERMRVALCRRV--A 248
Query: 209 IGPAHVKFAFKRKG-EHKGQNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLT-PER 265
+ + F +R HKG GK +++GG + GA ++ +A + L +LT PE
Sbjct: 249 LDDVYEYFGIRRSALAHKGSCGKAILVGGDHGFGGAALMSAEACVTVGAGLTRVLTRPEY 308
Query: 266 VARRIDD-PNLIVREVPGDNLRGEHI-ELALELSERVDAVVIGPGIGTKEETKEFVLEFI 323
A + P +V V D GE + + LE E + +GPG+GT + + +
Sbjct: 309 AAPLLTRCPEAMVTAVETDT--GEQLKQQMLEAFEWASTLAVGPGLGTGAYGQAALTAAL 366
Query: 324 KKVE----KPMVIDADGLKIIA---------------EDLDALKNRKFVLTPHAGEFKLL 364
+ E K +V+DAD L ++A + L L N ++TPH GE L
Sbjct: 367 RHAELHQDKTLVLDADALNLLAGCLHGREGGAAAGARKHLPVLPNS--IITPHPGEAARL 424
Query: 365 FGVKPGGSLVEKSKLVKEK--AEEINGVILLKGAYDIV---SDGKVWLYNKTGNRGMTTG 419
+ VEK +L + A + G LLKG IV S K + + GN GM +G
Sbjct: 425 LDCRVAD--VEKDRLAAARRLAAILGGTCLLKGPGTIVHCHSSAKTAIVD-AGNAGMASG 481
Query: 420 GTGDVLAGVVGSFLALG-NEPLRAASAGAFLTGFSGDLVYEEKG---EAFTALDVANKIP 475
G GDVL G++ A ++ AGA + G + D+V E G A ++ +++P
Sbjct: 482 GMGDVLTGLLAGLAAQRMHDTFDTTCAGALVHGVAADMVAAEDGRGTRGIRATELIHRVP 541
Query: 476 L 476
L
Sbjct: 542 L 542
>pir||A75386 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459289|gb|AAF11092.1|AE001996_7 (AE001996)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 458
Score = 118 bits (292), Expect = 2e-25
Identities = 124/480 (25%), Positives = 206/480 (42%), Gaps = 65/480 (13%)
Query: 28 MENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFENDVTVFLIGDETKIR 87
ME AG VA +E G +V + G G NGGD V ARHL F +G + +
Sbjct: 1 MEEAGRAVAAAAQECCPAG-RVLLLAGGGANGGDALVAARHL--------FALGRDVAVL 51
Query: 88 SEEAK--LNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRGEPREPIRS 145
+ AK L S + L + +++ + + L+ ++VD LLG G R P+
Sbjct: 52 ALPAKHPLTRSNRRRLARIGVEVAPLTPASLRRELKTAALVVDGLLGTGFTPPLRAPLAE 111
Query: 146 AIEKINEYHGKAKIVSIDLPSGYPSKVR------VKCDFAVTFQWDKEE-------YRDF 192
+ ++N ++IDLP+G + ++ + VT K Y
Sbjct: 112 LVAQVNA--SGVPTLAIDLPTGLDALTSEVSGDPLRAAWTVTLSGLKPALLFGPAAYLAG 169
Query: 193 DRVIVKIGYPRE--LYHLIG--PAHVKFA----FKRKGEHKGQNGKILIIGGSENYYGAP 244
+ + + P + L + P + A + HKG G++ ++GG GA
Sbjct: 170 EVTLADLRSPPDWALEEALASRPTDAEIAALLPVRHADAHKGTAGRVWVVGGHPGTVGAA 229
Query: 245 YLAG----KASSYLVDL-----VYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALE 295
LAG +A S LV + V L+ PE + R D + + E+P +
Sbjct: 230 ALAGVAALRAGSGLVTIHSATDVPLVMPELMMRCHADLSAALMEMPEE------------ 277
Query: 296 LSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKNRKFVLT 355
+R DA+ +G G+G + + + P V+DAD L+ +L + + T
Sbjct: 278 --QRPDALCVGMGLGPDAAS---IARQLLGWRLPTVLDADALQ---PELAGAGHDACIWT 329
Query: 356 PHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSD-GKVWLYNKTGNR 414
PH GE L G + + E+ GV+++KG +++ G VW+ ++ G+
Sbjct: 330 PHPGEAARLLGTSTPDIARDPIAAARALQEKFGGVVVVKGGPSVIAHTGGVWV-SRGGHP 388
Query: 415 GMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKI 474
GM + G GD L+G++ S L G AA AG L +G+L + G TA DV+ ++
Sbjct: 389 GMASAGMGDTLSGLLASLLGQGLSAPDAALAGVTLHARAGELAGAKHGYGLTATDVSAEL 448
>sp|P74217|YE33_SYNY3 HYPOTHETICAL 55.2 KD PROTEIN SLL1433 >gi|7470081|pir||S75852
hypothetical protein sll1433 - Synechocystis sp. (strain
PCC 6803) >gi|1653397|dbj|BAA18311.1| (D90913)
hypothetical protein [Synechocystis sp.]
Length = 524
Score = 116 bits (287), Expect = 7e-25
Identities = 133/477 (27%), Positives = 209/477 (42%), Gaps = 72/477 (15%)
Query: 1 MVGSMKMEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGKGL--KVAVFCGTGNN 58
+V + +M+++ W G+ LME A A+ + + ++ V G G+N
Sbjct: 11 VVSAAQMQEIENWLFTQ---GMPVAALMEKAALQTAQRLLTLYPLSTYPRIGVVVGPGHN 67
Query: 59 GGDGFVTARHLSFENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKL 118
GGDG V AR L + G + ++ KL ++++ K + V+
Sbjct: 68 GGDGLVVARELKLQ--------GYQVQVLQPLDKLKPLTQNHVDYGKSLGIPWVDGVQ-- 117
Query: 119 SLEEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSK------V 172
+L D+I+DAL G G I I IN +VSIDLPSG + V
Sbjct: 118 ALAHCDLIIDALFGVGLTRLITGAIADLITTINNL--PIPVVSIDLPSGIETDTGEILGV 175
Query: 173 RVKCDFAVTFQWDKEEYRDFDRVIVKIGY---------PRELYHLIG---PAHVKFAFKR 220
V+ D + K Y DR + +G P+ + +++G P V A +
Sbjct: 176 AVEADRSFCLGLWKRAYFQ-DRALAHLGQTELLGIGLPPQAIANVLGEVWPVQVLGADQA 234
Query: 221 KG---------EHKGQNGKILIIGGSENYYGAPY---LAGKASSYLVDLVYLLTPERVAR 268
+ HK Q G +L+I GS+ Y G L +AS V +V + P +
Sbjct: 235 QQTLPLSRPLVTHKYQQGHLLLICGSQQYAGGALLTTLGARASG--VGMVTVAVPMGIKA 292
Query: 269 RIDD--PNLIVR---EVPGDNLRGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFI 323
+ P ++V+ E P + G L+LS R AV +GPG+G+ ++E +
Sbjct: 293 LLHSQCPEVLVKGLLETPSGAIAGLG---NLDLS-RYSAVALGPGLGSDVGP---LVEEV 345
Query: 324 KKVEKPMVIDADGLKIIAED----LDALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKL 379
V P+++DADGL +A+ L A++ VLTPH GEFK LF P ++
Sbjct: 346 LSVNCPLILDADGLNQLAQQQLLPLLAVRTAPTVLTPHGGEFKRLF---PDIDQGDRLTA 402
Query: 380 VKEKAEEINGVILLKGAYDIVSD--GKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLA 434
V+ A +LLKGA +++ G W K + GG+GDVL G++G LA
Sbjct: 403 VQTAAAMCQATVLLKGAKTVIASPTGPTWAI-KDSTPALARGGSGDVLTGLMGGILA 458
>sp|O06250|YY33_MYCTU HYPOTHETICAL 46.9 KDA PROTEIN RV3433C >gi|7477619|pir||G70975
hypothetical protein Rv3433c - Mycobacterium
tuberculosis (strain H37RV) >gi|2104354|emb|CAB08682.1|
(Z95389) hypothetical protein Rv3433c [Mycobacterium
tuberculosis]
Length = 473
Score = 111 bits (276), Expect = 1e-23
Identities = 128/451 (28%), Positives = 189/451 (41%), Gaps = 66/451 (14%)
Query: 27 LMENAGSGVA----RIIEERFGK--GLKVAVFCGTGNNGGDGFVTARHLSFENDVT--VF 78
LM A G+A R + R G G +V G+G+NGGD A L V
Sbjct: 26 LMRRAAFGLATEIGRELTARTGGVVGRRVCAVVGSGDNGGDALWAATFLRRRGAAADAVL 85
Query: 79 LIGDETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRGE 138
L D T ++ A K ++ + D+++D ++G G
Sbjct: 86 LNPDRTHRKALAA----------------FTKSGGRLVESVSAATDLVIDGVVGISGSG- 128
Query: 139 PREPIRSAIEKINEYHGKAKI--VSIDLPSGYPSKV------RVKCDFAVTFQWDKEEYR 190
P+R A ++ A I V++D+PSG V VTF K +
Sbjct: 129 ---PLRPAAAQVFAAVQAAAIPVVAVDIPSGIDVATGAITGPAVHAALTVTFGGLKPVHA 185
Query: 191 --DFDRVI-VKIGYPRELYHLIG----PAHVKFAFKRKGEHKGQNGKILIIGGSENYYGA 243
D RV+ V IG ++G ++ + K G ++ GS Y GA
Sbjct: 186 LADCGRVVLVDIGLDLAHTDVLGFEATDVAARWPVPGPRDDKYTQGVTGVLAGSSTYPGA 245
Query: 244 PYLA-GKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELALELSERVDA 302
L G A + +V P +I P + RV A
Sbjct: 246 AVLCTGAAVAATSGMVRYAGTAHAEVLAHWPEVIASPTPA-------------AAGRVQA 292
Query: 303 VVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAE--DLDALKNRKFVLTPHAGE 360
V+GPG+GT +E L F + P+++DADGL ++A+ DL A +N VLTPHAGE
Sbjct: 293 WVVGPGLGT-DEAGAAALWFALDTDLPVLVDADGLTMLADHPDLVAGRNAPTVLTPHAGE 351
Query: 361 FKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSD--GKVWLYNKTGNRGMTT 418
F L G PG V + + A+ + +LLKG +++D G V+L N G T
Sbjct: 352 FARLAGAPPGDDRVGACR---QLADALGATVLLKGNVTVIADPGGPVYL-NPAGQSWAAT 407
Query: 419 GGTGDVLAGVVGSFLALGNEPLRAASAGAFL 449
G+GDVL+G++G+ LA G AA+A AF+
Sbjct: 408 AGSGDVLSGMIGALLASGLPSGEAAAAAAFV 438
>pir||G81111 conserved hypothetical protein NMB1197, NMB1159 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226396|gb|AAF41545.1| (AE002464) conserved
hypothetical protein [Neisseria meningitidis MC58]
>gi|7226434|gb|AAF41580.1| (AE002467) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 296
Score = 109 bits (269), Expect = 9e-23
Identities = 81/257 (31%), Positives = 126/257 (48%), Gaps = 19/257 (7%)
Query: 218 FKRKGE--HKGQNGKILIIGGSENYYGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNL 275
FK + E HKG G + ++GGS GAP LA A+ YL +V + L
Sbjct: 26 FKARAEDSHKGTFGTLAVVGGSAGMSGAPVLAASAAMYL-------GCGKVWAGFNQDTL 78
Query: 276 IVREVPGDNLRGEHIELALELSERVD--AVVIGPGIGTKEETKEFVLEFIKK-VEKPMVI 332
+ G ++ A L++R D A V+G G+GT + + + +KP+V+
Sbjct: 79 PFAVIAG--FPEIMLDTADSLAKRQDINAWVVGCGLGTGRAAVGTLAGILTEHTDKPVVL 136
Query: 333 DADGLKIIAEDLD----ALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEIN 388
DAD L I++ D + A + +LTPH E L G +++ V++
Sbjct: 137 DADALNILSTDAETRNLARGCKNLILTPHPAEAARLLGTTVAQVQADRTAAVRKIGAIFG 196
Query: 389 GVILLKGAYDIVSDGKVWLY-NKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGA 447
++LKG +V+ +Y N++GN G+ T G+GDVL G++GS LA G AA AGA
Sbjct: 197 ATVVLKGHKTLVASPDTEIYVNESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGA 256
Query: 448 FLTGFSGDLVYEEKGEA 464
+L G + D++ E G A
Sbjct: 257 WLHGAAADVIKESAGIA 273
>pir||C81906 hypothetical protein NMA1369 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380037|emb|CAB84615.1|
(AL162755) hypothetical protein NMA1369 [Neisseria
meningitidis Z2491]
Length = 296
Score = 103 bits (254), Expect = 5e-21
Identities = 77/257 (29%), Positives = 126/257 (48%), Gaps = 19/257 (7%)
Query: 218 FKRKGE--HKGQNGKILIIGGSENYYGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNL 275
FK + E HKG G + ++GG+ GAP LA A+ YL +V + L
Sbjct: 26 FKARAEDSHKGTFGTLAVVGGAVGMSGAPVLAASAAMYL-------GCGKVWAGFNQETL 78
Query: 276 IVREVPGDNLRGEHIELALELSER--VDAVVIGPGIGTKEETKEFVLEFIKK-VEKPMVI 332
+ G ++ A L++R ++A G G+GT + + + + +KP+++
Sbjct: 79 PFAVIAG--FPEIMLDTADGLTKRQGINAWTAGCGLGTDKAAVGTLAGILTEHTDKPVLL 136
Query: 333 DADGLKIIAEDLD----ALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEIN 388
DAD L I++ D + A + +LTPH E L G +++ V++
Sbjct: 137 DADALNILSTDAETRNLARGCKNLILTPHPAEAARLLGTTVAQVQADRTAAVRKIGAIFG 196
Query: 389 GVILLKGAYDIVSDGKVWLY-NKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGA 447
++LKG +V+ +Y N++GN G+ T G+GDVL G++GS LA G AA AGA
Sbjct: 197 ATVVLKGHKTLVAASDTEIYVNESGNAGLATAGSGDVLGGIIGSLLAQGVPVFEAACAGA 256
Query: 448 FLTGFSGDLVYEEKGEA 464
+L G + D++ E G A
Sbjct: 257 WLHGAAADVIKESAGIA 273
>pir||C81437 hypothetical protein Cj0188c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967681|emb|CAB72671.1|
(AL139074) hypothetical protein Cj0188c [Campylobacter
jejuni]
Length = 456
Score = 102 bits (253), Expect = 7e-21
Identities = 120/476 (25%), Positives = 206/476 (43%), Gaps = 80/476 (16%)
Query: 7 MEDVYIWDLNAKWLGITPFQLMENAGSGVARIIEERFGK--------GLKVAVFCGTGNN 58
++++ I + NA G+ LMENAG +A++I++ K +K+ G GNN
Sbjct: 5 IDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKIRIQRKIRKVKILFLLGGGNN 64
Query: 59 GGDGFVTARHLSFENDVTVFLIG--DETKIRSEEAKLNWSILKNLEFVKIKILKDSSQVK 116
DG V R+L + IG + T + +E IL+N F K K
Sbjct: 65 ASDGLVALRNLKHAK---AYKIGFKENTLFKKQE-----QILQNYAFKFCK--------K 108
Query: 117 KLSLEEFDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYPSKVRVKC 176
+ + ++F +I+D +LG G+ E I+K+N+ KA ++ D+P+ K
Sbjct: 109 EPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQ--SKALKIACDIPTNLGFYPCFKA 166
Query: 177 DFAVTFQWDKEEY-RDFDRVIV------------KIGYPRELYHLIGPAHVKFAFKRKGE 223
D KE DF + V K YP L+ +K ++
Sbjct: 167 DITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLKTIDRKINA 226
Query: 224 HKGQNGKILIIGGSENYYGAPYLAGK-ASSYLVDLVYLLTPERVARRIDDPNLIVREVPG 282
+KG G I I+ + A LAG A ++ LV L VA++ P L+++E
Sbjct: 227 NKGNFGHIYIVANAS----AGTLAGLGALNFGAGLVSL-----VAQKSFSPLLMLKE--- 274
Query: 283 DNLRGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAE 342
++ A+ +G G+ + K+ +L+ P+++DA+ ++E
Sbjct: 275 ------------KIENNASAIALGMGLENLDFLKDEILQ-----NTPLILDANCF--LSE 315
Query: 343 DLDALKNRK-FVLTPHAGEF----KLLFGVKPGGSLVEKSKL--VKEKAEEINGVILLKG 395
L NRK V+TPH EF K+ F ++K++ ++ ++ + V++LKG
Sbjct: 316 ALLWYLNRKDVVITPHPKEFIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKG 375
Query: 396 AYDIVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTG 451
A I+ + GN+ + GG+GDVL+G++ + L G L AA G
Sbjct: 376 ANPIIVQKEKLFVVNLGNQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHG 431
>pir||T41463 conserved hypothetical PFAM UPF0031 containing protein - fission
yeast (Schizosaccharomyces pombe)
>gi|3947854|emb|CAA22272.1| (AL034381) conserved
hypothetical protein [Schizosaccharomyces pombe]
Length = 327
Score = 102 bits (251), Expect = 1e-20
Identities = 87/295 (29%), Positives = 139/295 (46%), Gaps = 41/295 (13%)
Query: 224 HKGQNGKILIIGGSENYYGAPYLAGKASS-YLVDLVYLLTPERVARRID--DPNLIV--- 277
HKGQ G++ + GG ++Y GAPY + +S + D ++ + A I P+LIV
Sbjct: 27 HKGQAGRVGVFGGCQHYTGAPYYSSMSSMLFGSDQSHIFCEKEAANVIKSYSPDLIVHPF 86
Query: 278 -----REVPGDNLRGEHIELALELSERVDAVVIGPGIGTKEETKEF---VLEFIKKVEKP 329
+ P D++ + EL + R+ A+VIGPG+G E +E V+E+ +K + P
Sbjct: 87 LREKDKAGPEDSV-DKCFELIKPMMGRLHAIVIGPGLGRDEWMQEIMAKVIEYARKNDMP 145
Query: 330 MVIDADGLKIIAEDLDALKN-RKFVLTPHAGEFKLL---FGVKPGGSLVEKSKLVKEKAE 385
MVIDADGL +I + + + +LTP+ EFK L +K G + A
Sbjct: 146 MVIDADGLWLIQQRPELVSGYHNVILTPNVIEFKRLCDKLDIKSDG-----PDACNQLAG 200
Query: 386 EINGVILLKGAYDIVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLAL---------- 435
++N +I+ KG DI+SDG GG GD+L G++ +FLA
Sbjct: 201 KLNLLIIQKGQSDIISDGATAYACSVPGGLKRCGGQGDILTGILATFLAWRHAYLSKEWD 260
Query: 436 --GNEPLR-----AASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRILE 483
GN + AA + T + L ++E G A + D+ + A ++E
Sbjct: 261 TEGNMDAKECLFLAAFGASACTRWCSRLAFKECGRATQSTDLVRHVGKAYNALME 315
>gb|AAF49189.1| (AE003518) CG10424 gene product [Drosophila melanogaster]
Length = 300
Score = 101 bits (249), Expect = 2e-20
Identities = 85/275 (30%), Positives = 135/275 (48%), Gaps = 38/275 (13%)
Query: 223 EHKGQNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVRE 279
+HKGQ G+I +IGGS Y GAPY A +S + DL ++ + I P+LIV
Sbjct: 29 KHKGQYGRIGVIGGSLEYTGAPYFAAISSIRVGADLAHVFCHSNASAIIKSYSPDLIVHP 88
Query: 280 VPGDNLRGEHIELALELSERVDAVVIGPGIGTKE---ETKEFVLEFIKKVEKPMVIDADG 336
V + +E ER+ VVIGPG+G + +T VL+ +KP+VIDADG
Sbjct: 89 VLD---CVDAVERIAPWLERLHVVVIGPGLGREPGILKTASNVLKLCMDTKKPVVIDADG 145
Query: 337 LKIIAEDLDALKNR-KFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEING--VILL 393
L ++ ++L+ + + +LTP+ EF+ LFG E + ++K + +L
Sbjct: 146 LFLLNDNLNLICGQPNVILTPNVMEFQRLFG--------EDDQAARQKMSLLGAGVTVLE 197
Query: 394 KGAYDIVSDGKVWLYN-------KTGNRGMTTGGTGDVLAGVVGSFLALG------NEPL 440
KGA D K++L + +G G GG GD+L+G + +F + N L
Sbjct: 198 KGAND-----KIYLPHCNEVHSMPSGGSGRRCGGQGDLLSGSLATFFSWSLQSGEPNPAL 252
Query: 441 RAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIP 475
AA A ++ +++ G + A D+ N+IP
Sbjct: 253 VAACASSYFVKKLNAAAFQKFGRSLLASDMVNQIP 287
>sp|Q9ZJM4|YD63_HELPJ HYPOTHETICAL PROTEIN HP1363/JHP1281 >gi|7464987|pir||G71825
hypothetical protein jhp1281 - Helicobacter pylori
(strain J99) >gi|4155896|gb|AAD06866.1| (AE001551)
putative [Helicobacter pylori J99]
Length = 464
Score = 98.7 bits (242), Expect = 1e-19
Identities = 133/479 (27%), Positives = 221/479 (45%), Gaps = 74/479 (15%)
Query: 27 LMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFENDVTVFLIGDETKI 86
LMENA + R + + G KV + CG+G+NGGDG+ AR L VF E K+
Sbjct: 26 LMENAAMALERAVLQNASLGAKVIILCGSGDNGGDGYTLARRLVGRFKTLVF----EMKL 81
Query: 87 RSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRG--EPREPIR 144
AK L+ K+ ++ + + K L E DV+VD ++G+ +G EP
Sbjct: 82 ----AKSPMCQLQKERAKKVGVVIKAWEEKNEDL-ECDVLVDCVVGSAFKGGLEPFLDFE 136
Query: 145 SAIEKINEYHGKAKIVSIDLPSGYPSKVRV-----KCDFAVTFQWDK-----EEYRDF-- 192
S +K + KI + D+PSG SK RV K D ++ K ++ +D+
Sbjct: 137 SLSQK-----ARFKI-ACDIPSGIDSKGRVDKRAFKADTTISMGAIKSCLLSDKAKDYIG 190
Query: 193 DRVIVKIGYPRELYH------LIGPAHVKFAFK-RKGEHKGQNGKILIIGGSENYYGAPY 245
+ + +G ++Y L+ + +K + RK HKG +Y A
Sbjct: 191 ELKVGHLGVFNQIYEIPTDTFLLEKSDLKLPLRDRKNAHKG------------DYGHAHV 238
Query: 246 LAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELAL--ELSERVDAV 303
L GK S L+ L+ + + E+ +N + +EL +++ A
Sbjct: 239 LLGKHSG--AGLLSALSALSFGSGVVSIQALECEITSNN---KPLELVFCENFPKKLSAF 293
Query: 304 VIGPGIGTKEETKEFVLEFIKKVE-KPMVIDADGLKIIAEDLDALKNRKFVLTPHAGEF- 361
+G G+ + +F K +E P V+DA G+ E L AL+ ++ +LTPH EF
Sbjct: 294 ALGMGL------ENIPKDFKKWLELAPCVLDA-GVFYHKEVLQALE-KEVILTPHPKEFL 345
Query: 362 KLLFGVKPGGSLVE----KSKLVKEKAEEI-NGVILLKGAYDIVS-DGKVWLYNKTGNRG 415
LL V S++E K ++ ++ +++ V+LLKGA +++ G+V++ N G+
Sbjct: 346 SLLKSVGINISMLELLDNKLEIARDFSQKYPKVVLLLKGANTLIAHQGRVFI-NNLGSVA 404
Query: 416 MTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANKI 474
+ G+GDVLAG++ S L+ PL AA + +G + + A T LD+ KI
Sbjct: 405 LAKAGSGDVLAGLIVSLLSQNYTPLDAAINASLAHALAG--LEFKNHYALTPLDLIEKI 461
>sp|P94368|YXKO_BACSU HYPOTHETICAL 29.9 KD PROTEIN IN SIGY-CYDD INTERGENIC REGION
>gi|7474795|pir||D70081 conserved hypothetical protein
yxkO - Bacillus subtilis >gi|1783254|dbj|BAA11731.1|
(D83026) homologous to hypothetical proteins
(pir:s41739; SwissProt:Y201_MYCLE; hypothetical
[Bacillus subtilis] >gi|2636407|emb|CAB15898.1| (Z99123)
similar to hypothetical proteins [Bacillus subtilis]
Length = 276
Score = 95.2 bits (233), Expect = 1e-18
Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 19/264 (7%)
Query: 224 HKGQNGKILIIGGSENYYGAPYLAGKAS--SYLVDLVYLLTPERVARRIDDPNLIVREVP 281
HKG G L++ GS++ GA LAG + S L LV + T E V LIV +P
Sbjct: 23 HKGTYGTALLLAGSDDMPGAALLAGLGAMRSGLGKLV-IGTSENVIP------LIVPVLP 75
Query: 282 GDNLRGEHIELALE--LSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKI 339
+ + A + L E A+ IGPG+ E ++ V + + + P+++DA L
Sbjct: 76 EATYWRDGWKKAADAQLEETYRAIAIGPGLPQTESVQQAV-DHVLTADCPVILDAGAL-- 132
Query: 340 IAEDLDALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDI 399
A+ + +LTPH GEF + GV ++++ KE A ++ VI+LKG +
Sbjct: 133 -AKRTYPKREGPVILTPHPGEFFRMTGVPVNELQKKRAEYAKEWAAQLQTVIVLKGNQTV 191
Query: 400 VS--DGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDL- 456
++ DG WL N TGN + GGTGD L G++ L +P A +L G +L
Sbjct: 192 IAFPDGDCWL-NPTGNGALAKGGTGDTLTGMILGMLCCHEDPKHAVLNAVYLHGACAELW 250
Query: 457 VYEEKGEAFTALDVANKIPLALKR 480
E A ++++ +P KR
Sbjct: 251 TDEHSAHTLLAHELSDILPRVWKR 274
>sp|P37391|YY33_MYCLE HYPOTHETICAL 39.3 KDA PROTEIN IN GADB-GLMS INTERGENIC REGION
>gi|2145801|pir||S72984 hypothetical protein B229_C2_201
- Mycobacterium leprae >gi|467116|gb|AAA17298.1|
(U00020) u229g; match to 39.6 kd E.coli protein in amiB
5' region (yjeF); B229_C2_201 [Mycobacterium leprae]
Length = 392
Score = 94.4 bits (231), Expect = 3e-18
Identities = 97/331 (29%), Positives = 144/331 (43%), Gaps = 38/331 (11%)
Query: 124 DVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGYP------SKVRVKCD 177
D+++D ++G G P P +A+ G +V++DLPSG + V
Sbjct: 61 DLVIDGVVGISGSG-PLRPAAAAVFATVSASG-VPVVAVDLPSGIDVVTGVINGPAVHAA 118
Query: 178 FAVTFQWDKEEYRDFDR---VIVKIGYPRELYHLIG--PAHVKFAFKRKGEH--KGQNGK 230
VTF K + D +V IG ++G A V + G H K G
Sbjct: 119 LTVTFGGLKPVHALADCGDVTLVDIGLDLPDSDILGLQAADVAAYWPVPGVHDDKYTQGV 178
Query: 231 ILIIGGSENYYGAPYLA-GKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEH 289
++ GS Y GA L G A + +V P +I P
Sbjct: 179 TGVLAGSSTYPGAAVLCTGAAVAATSGMVRYAGSAYTQVLAHWPEVIASATP-------- 230
Query: 290 IELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIAEDLDALKN 349
+ RV + V+GPG+G + T L F + + P+++DADGL ++A D + N
Sbjct: 231 -----TAAGRVQSWVVGPGLGI-DATATAALWFALETDLPVLVDADGLTMLAAHPDLVIN 284
Query: 350 RKF--VLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGAYDIVSD--GKV 405
R VLTPHA EF L G PG V + + A+ +LLKG +++D G V
Sbjct: 285 RNAPTVLTPHASEFARLAGTPPGDDRVGACRKL---ADSFGATVLLKGNVTVIADPGGPV 341
Query: 406 WLYNKTGNRGMTTGGTGDVLAGVVGSFLALG 436
+L N G T G+GDVL+G++G+ LA G
Sbjct: 342 YL-NPAGQSWAATAGSGDVLSGMIGALLAAG 371
>gi|6322698 Ykl151cp [Saccharomyces cerevisiae] >gi|549726|sp|P36059|YKP1_YEAST
HYPOTHETICAL 37.4 KD PROTEIN IN GPM1-MCR1 INTERGENIC
REGION >gi|481118|pir||S37799 hypothetical protein
YKL151c - yeast (Saccharomyces cerevisiae)
>gi|407496|emb|CAA81502.1| (Z26877) unknown
[Saccharomyces cerevisiae] >gi|486262|emb|CAA81992.1|
(Z28151) ORF YKL151c [Saccharomyces cerevisiae]
>gi|1582553|prf||2118404P ORF [Saccharomyces cerevisiae]
Length = 337
Score = 92.8 bits (227), Expect = 8e-18
Identities = 77/242 (31%), Positives = 117/242 (47%), Gaps = 38/242 (15%)
Query: 224 HKGQNG-KILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRIDD--PNLIVRE 279
HKGQ+G ++ IIGG E+Y GAPY + A++ + DL +++ I PNL+V
Sbjct: 27 HKGQSGGRVCIIGGCEDYTGAPYFSANATALMGCDLTHVICEYNAGTVIKSYTPNLMVHP 86
Query: 280 VPGDNLRGEHIELALELSE----------RVDAVVIGPGIGTK----EETKEFVLEFIKK 325
LR + +L +++ E R+ VVIGPG+G + K+ + ++K
Sbjct: 87 Y----LRMSNTKLDVDMDEQRKKINSLLDRIHVVVIGPGLGRDPLMLKSIKDIIRYILEK 142
Query: 326 VEK--PMVIDADGLKIIAED------LDALKNRKFVLTPHAGEFKLLFGV--KPGGSLVE 375
E P+VIDADGL ++ +D L + + +LTP+ EFK L K G S E
Sbjct: 143 HEGKIPLVIDADGLFLVTQDSEVKEMLKSYPKGRVILTPNVVEFKRLCDAIGKKGDSHSE 202
Query: 376 KSKLVKEKAEEINGVILLKGAYDIV---SDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSF 432
L+ A+E+N +++ KG D + K L N GG GD L G +
Sbjct: 203 MGSLI---AQELNCIVVEKGQSDKIFSPDSEKDMLTNSEEGSNKRVGGQGDTLTGAISCM 259
Query: 433 LA 434
LA
Sbjct: 260 LA 261
>sp|P56176|YD63_HELPY HYPOTHETICAL PROTEIN HP1363 >gi|7463951|pir||C64690 conserved
hypothetical integral membrane protein HP1363 -
Helicobacter pylori (strain 26695)
>gi|2314529|gb|AAD08403.1| (AE000636) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 466
Score = 92.8 bits (227), Expect = 8e-18
Identities = 128/481 (26%), Positives = 217/481 (44%), Gaps = 76/481 (15%)
Query: 27 LMENAGSGVARIIEERFGKGLKVAVFCGTGNNGGDGFVTARHLSFENDVTVFLIGDETKI 86
LMENA + R + + G KV + CG+G+NGGDG+ AR L VF E K+
Sbjct: 26 LMENAAMALERAVLQNASLGAKVIILCGSGDNGGDGYALARRLVGRFKTLVF----EMKL 81
Query: 87 -RSEEAKLNWSILKNLEFVKIKILKDSSQVKKLSLEEFDVIVDALLGAGTRGEPREPIRS 145
+S +L K V IK ++++ + L E DV++D ++G+ +G+ EP +
Sbjct: 82 AKSPMCQLQQERAKKAGVV-IKAYEENALNQNL---ECDVLIDCVIGSHFKGK-LEPFLN 136
Query: 146 AIEKINEYHGKAKI-VSIDLPSGYPSKVRV-----KCDFAVTFQWDK-----EEYRDF-- 192
E +++ KA+ ++ D+PSG SK RV K D ++ K + +D+
Sbjct: 137 -FESLSQ---KARFKIACDIPSGIDSKGRVDKGAFKADLTISMGAIKSCLLSDRAKDYVG 192
Query: 193 DRVIVKIGYPRELYH------LIGPAHVKFAFK-RKGEHKGQNGKILIIGGSENYYGAPY 245
+ + +G ++Y L+ + +K + RK HKG G ++ G + G
Sbjct: 193 ELKVGHLGVFNQIYEIPTDTFLLEKSDLKLPLRDRKNAHKGDYGHAHVLLGKHSGAG--- 249
Query: 246 LAGKASSYLVDLVYLLTPERVARRIDDPNLIVREVPGDNLRGEHIELAL--ELSERVDAV 303
L+ L+ + + E+ +N + +EL + A
Sbjct: 250 -----------LLSALSALSFGSGVVSVQALECEITSNN---KPLELVFCENFPNLLSAF 295
Query: 304 VIGPGIGTKEETKEFVLEFIKKVE-KPMVIDADGLKIIAEDLDALKNRKFVLTPHAGEFK 362
+G G+ + +F K +E P V+DA G+ E L AL+ ++ +LTPH EF
Sbjct: 296 ALGMGL------ENIPKDFNKWLELAPCVLDA-GVFYHKEVLQALE-KEVILTPHPKEFL 347
Query: 363 LLFGVKPGGSLVEKSKLVKEKAEEING--------VILLKGAYDIVS-DGKVWLYNKTGN 413
L +K G + +L+ K E V+LLKGA +++ G+V++ N G+
Sbjct: 348 SL--LKLVGINISMLELLDNKLEIARDFSQKYPKVVLLLKGANTLIAHQGQVFI-NILGS 404
Query: 414 RGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTGFSGDLVYEEKGEAFTALDVANK 473
+ G+GDVLAG++ S L+ PL AA + + + + A T LD+ K
Sbjct: 405 VALAKAGSGDVLAGLILSLLSQNYTPLDAAINASSAHALAS--LEFKNNYALTPLDLIEK 462
Query: 474 I 474
I
Sbjct: 463 I 463
>emb|CAA78469.2| (Z14092) predicted using Genefinder~contains similarity to Pfam
domain: PF01256 (Uncharacterized protein family
UPF0031), Score=489.4, E-value=8.8e-144, N=1~cDNA EST
yk614a7.3 comes from this gene~cDNA EST yk633d12.3 comes
from this gene~cDNA EST yk614>
Length = 307
Score = 92.4 bits (226), Expect = 1e-17
Identities = 86/283 (30%), Positives = 134/283 (46%), Gaps = 34/283 (12%)
Query: 225 KGQNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVREVP 281
KG GK+ +IGGS Y GAPY A ++S L DL+++ A+ I P+LIV P
Sbjct: 17 KGDCGKMGVIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQVIKGYSPDLIVH--P 74
Query: 282 GDNLRGEHIELALELSERVDAVVIGPGIGTKEE---TKEFVLEFIKKVEKPMVIDADGLK 338
G +L+ R+DA+VIGPG+G + + EF++ + P VID DGL
Sbjct: 75 GMTANSIIPKLS-----RMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDGDGLW 129
Query: 339 IIAEDLDALKNR--KFVLTPHAGEFKLLFGVKPGGSLV-------EKSKLVKEKAEEING 389
++E ++ + VLTP+ EF L G V + L E + ++N
Sbjct: 130 FVSEHIEKFPRQMSATVLTPNIVEFSRLCKSALGEEDVLNVRNNSQLQHLAAELSRKMNV 189
Query: 390 VILLKGAYDIV--SDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPL------- 440
I LKG D+V +G+V + T + GG GDV AG +G FL + L
Sbjct: 190 TIYLKGEVDLVVTPNGEVSKCS-TESSLRRCGGQGDVTAGSLGLFLYWAKKNLGDDWTSA 248
Query: 441 --RAASAGAFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRI 481
A A ++L +G +E+ G + + ++IP ++ +
Sbjct: 249 HHEAGIASSWLVRTAGRRAFEKHGRSMNTPLLLDEIPKLVRDV 291
>gi|11433649 hypothetical protein FLJ10769 [Homo sapiens]
Length = 390
Score = 88.5 bits (216), Expect = 1e-16
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 223 EHKGQNGKILIIGGSENYYGAPYLAG-KASSYLVDLVYLLTPERVARRID--DPNLIVRE 279
+HKGQ+G+I ++GG + Y GAPY A A DL ++ A I P LIV
Sbjct: 68 KHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGADLSHVFCASAAAPVIKAYSPELIVHP 127
Query: 280 VPGDNLRGEHIELALELSERVDAVVIGPGIGTKE---ETKEFVLEFIKKVEKPMVIDADG 336
V +E L R+ A+V+GPG+G + + +LE K + P+VIDADG
Sbjct: 128 VLDSPNAVHEVEKWL---PRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVIDADG 184
Query: 337 LKIIAEDLDALKN-RKFVLTPHAGEFKLLFGV---KPGGSLVEKSKLVKEKAEEINGVIL 392
L ++A+ + RK VLTP+ EF L+ P S +++ N ++
Sbjct: 185 LWLVAQQPALIHGYRKAVLTPNHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVV 244
Query: 393 LKGAYDIVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVG 430
KG DI+S+G+ L GG GD+L+G +G
Sbjct: 245 QKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLG 282
>gi|8922654 hypothetical protein FLJ10769 [Homo sapiens]
>gi|7023003|dbj|BAA91797.1| (AK001631) unnamed protein
product [Homo sapiens]
Length = 390
Score = 87.8 bits (214), Expect = 3e-16
Identities = 71/218 (32%), Positives = 105/218 (47%), Gaps = 13/218 (5%)
Query: 223 EHKGQNGKILIIGGSENYYGAPYLAG-KASSYLVDLVYLLTPERVARRID--DPNLIVRE 279
+HKGQ+G+I ++GG + Y GAPY A A DL ++ A I P LIV
Sbjct: 68 KHKGQDGRIGVVGGCQEYTGAPYFAAISALKVGADLSHVFCASAAAPVIKAYSPELIVHP 127
Query: 280 VPGDNLRGEHIELALELSERVDAVVIGPGIGTKE---ETKEFVLEFIKKVEKPMVIDADG 336
V +E L R+ A+V+GPG+G + + +LE K + P+VIDADG
Sbjct: 128 VLDSPNAVHEVEKWL---PRLHALVVGPGLGRDDALLRNVQGILEVSKARDIPVVIDADG 184
Query: 337 LKIIAEDLDALKN-RKFVLTPHAGEFKLLFGV---KPGGSLVEKSKLVKEKAEEINGVIL 392
L ++A+ + RK VLTP EF L+ P S +++ N ++
Sbjct: 185 LWLVAQQPALIHGYRKAVLTPDHVEFSRLYDAVLRGPMDSDDSHGSVLRLSQALGNVTVV 244
Query: 393 LKGAYDIVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVG 430
KG DI+S+G+ L GG GD+L+G +G
Sbjct: 245 QKGERDILSNGQQVLVCSQEGSSRRCGGQGDLLSGSLG 282
>pir||S30872 hypothetical protein R107.2 - Caenorhabditis elegans
Length = 286
Score = 87.4 bits (213), Expect = 3e-16
Identities = 82/275 (29%), Positives = 128/275 (45%), Gaps = 34/275 (12%)
Query: 233 IIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVREVPGDNLRGEH 289
+IGGS Y GAPY A ++S L DL+++ A+ I P+LIV PG
Sbjct: 3 VIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQVIKGYSPDLIVH--PGMTANSII 60
Query: 290 IELALELSERVDAVVIGPGIGTKEE---TKEFVLEFIKKVEKPMVIDADGLKIIAEDLDA 346
+L+ R+DA+VIGPG+G + + EF+ + P VID DGL ++E ++
Sbjct: 61 PKLS-----RMDAIVIGPGLGRNPNIWPLMQELFEFVSNSDVPFVIDGDGLWFVSEHIEK 115
Query: 347 LKNR--KFVLTPHAGEFKLLFGVKPGGSLV-------EKSKLVKEKAEEINGVILLKGAY 397
+ VLTP+ EF L G V + L E + ++N I LKG
Sbjct: 116 FPRQMSATVLTPNIVEFSRLCKSALGEEDVLNVSNNSQLQHLAAELSRKMNVTIYLKGEV 175
Query: 398 DIV--SDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPL---------RAASAG 446
D+V +G+V + T + GG GDV AG +G FL + L A A
Sbjct: 176 DLVVTPNGEVSKCS-TESSLRRCGGQGDVTAGSLGLFLYWAKKNLGDDWTSAHHEAGIAS 234
Query: 447 AFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRI 481
++L +G +E+ G + + ++IP ++ +
Sbjct: 235 SWLVSTAGSRAFEKHGRSMNTPLLLDEIPKLVRDV 269
>gb|AAD21559.1| (AF088896) unknown [Zymomonas mobilis]
Length = 484
Score = 86.6 bits (211), Expect = 6e-16
Identities = 59/160 (36%), Positives = 92/160 (56%), Gaps = 13/160 (8%)
Query: 298 ERVDAVVIGPGIGTKEETKEFVLEFIKKVEKPMVIDADGLKIIA-EDLDALKN--RKFVL 354
ER++A+VIGPG+G ++E L P+V+DAD L +++ E LD L+N + ++
Sbjct: 302 ERINALVIGPGLG-RDELGVQRLSMALDTSHPLVLDADALFLLSREGLDCLRNIQQPTII 360
Query: 355 TPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEING-VILLKGAYDIVS--DGKVWLYNKT 411
TPH GEFK LF G L +K A ++G V++LKGA +++ DG+ + ++
Sbjct: 361 TPHEGEFKRLFEGISGDKLTRVTK-----AAALSGLVVVLKGADTVIATPDGRAAI-SQP 414
Query: 412 GNRGMTTGGTGDVLAGVVGSFLALGNEPLRAASAGAFLTG 451
+ GTGDVL+G+ G+ LA G +P AA +L G
Sbjct: 415 AVSWLANAGTGDVLSGICGAMLARGMDPFDAACTAVWLHG 454
>sp|P32740|YNH2_CAEEL HYPOTHETICAL 31.0 KD PROTEIN R107.2 IN CHROMOSOME III
Length = 285
Score = 86.2 bits (210), Expect = 7e-16
Identities = 82/275 (29%), Positives = 129/275 (46%), Gaps = 34/275 (12%)
Query: 233 IIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRID--DPNLIVREVPGDNLRGEH 289
+IGGS Y GAPY A ++S L DL+++ A+ I P+LIV PG
Sbjct: 3 VIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQVIKGYSPDLIVH--PGMTANSII 60
Query: 290 IELALELSERVDAVVIGPGIGTKEE---TKEFVLEFIKKVEKPMVIDADGLKIIAEDLDA 346
+L+ R+DA+VIGPG+G + + EF++ + P VID DGL ++E ++
Sbjct: 61 PKLS-----RMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDGDGLWFVSEHIEK 115
Query: 347 LKNR--KFVLTPHAGEFKLLFGVKPGGSLV-------EKSKLVKEKAEEINGVILLKGAY 397
+ VLTP+ EF L G V + L E + ++N I LKG
Sbjct: 116 FPRQMSATVLTPNIVEFSRLCKSALGEEDVLNVRNNSQLQHLAAELSRKMNVTIYLKGEV 175
Query: 398 DIV--SDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLALGNEPL---------RAASAG 446
D+V +G+V + T + GG GDV AG +G FL + L A A
Sbjct: 176 DLVVTPNGEVSKCS-TESSLRRCGGQGDVTAGSLGLFLYWAKKNLGDDWTSAHHEAGIAS 234
Query: 447 AFLTGFSGDLVYEEKGEAFTALDVANKIPLALKRI 481
++L +G +E+ G + + ++IP ++ +
Sbjct: 235 SWLVRTAGRRAFEKHGRSMNTPLLLDEIPKLVRDV 269
>gb|AAG10448.1|AF279106_10 (AF279106) predicted kinase of P-loop ATPase superfamily
[uncultured proteobacterium EBAC31A08]
Length = 285
Score = 80.0 bits (194), Expect = 6e-14
Identities = 68/228 (29%), Positives = 106/228 (45%), Gaps = 16/228 (7%)
Query: 219 KRKGEHKGQNGKILIIGGSENYYGAPYLAGKASSYL-VDLVYLLTPERVARRIDDPNLIV 277
+ K HKG GK+LI GS GA LA +AS + LV L+T N V
Sbjct: 19 RAKDSHKGNFGKVLICAGSPGMGGAGILASEASLFCGSGLVTLVTDTSNVSPSLLRNPEV 78
Query: 278 REVPGDNLRGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIKKV-EKPMVIDADG 336
+ D + G I+L + + ++ GPGI K + + +K +++DA
Sbjct: 79 MAIGVDMVEGVDIDLKI---KDHSVILYGPGIANTAFAKTILGKILKSANNSKIILDAGA 135
Query: 337 LKIIAEDLDALK--NRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEIN-GVILL 393
L I+A +K N+ ++TPH GE +L + ++ K+ A+ +++L
Sbjct: 136 LHIVASSKSLIKKSNKTILMTPHPGEAAILLNISIEEVQRDRISAAKQIADTYGASIVIL 195
Query: 394 KGAYDIVSDGKVWLYNKT-----GNRGMTTGGTGDVLAGVVGSFLALG 436
KG +V D NK+ G + +GGTGDVLAGV+ + LA G
Sbjct: 196 KGMGTVVFDS---TNNKSFICACGGPELASGGTGDVLAGVLTALLAQG 240
>gi|6324129 Ynl200cp [Saccharomyces cerevisiae] >gi|732194|sp|P40165|YNU0_YEAST
HYPOTHETICAL 27.5 KD PROTEIN IN SPX19-GCR2 INTERGENIC
REGION >gi|2131919|pir||S50731 hypothetical protein
YNL200c - yeast (Saccharomyces cerevisiae)
>gi|600065|emb|CAA55508.1| (X78898) N1370 [Saccharomyces
cerevisiae] >gi|1302200|emb|CAA96099.1| (Z71476) ORF
YNL200c [Saccharomyces cerevisiae]
Length = 246
Score = 78.0 bits (189), Expect = 2e-13
Identities = 56/166 (33%), Positives = 83/166 (49%), Gaps = 16/166 (9%)
Query: 14 DLNAKWLGITPFQLMENAGSGVARIIEERFG--------KGLKVAVFCGTGNNGGDGFVT 65
+L +G T QLME AG VA+ + +F KG V V G GNNGGDG V
Sbjct: 18 ELMGPQIGFTLQQLMELAGFSVAQAVCRQFPLRGKTETEKGKHVFVIAGPGNNGGDGLVC 77
Query: 66 ARHLS-FENDVTVFLIGDETKIRSEEAKLNWSILKNLEFVKIKILK--DSSQVKKLSLEE 122
ARHL F + VF RSE + ++ L F K+ +L + + ++ L E+
Sbjct: 78 ARHLKLFGYNPVVFY-----PKRSERTEFYKQLVHQLNFFKVPVLSQDEGNWLEYLKPEK 132
Query: 123 FDVIVDALLGAGTRGEPREPIRSAIEKINEYHGKAKIVSIDLPSGY 168
IVDA+ G + REP + +E++ + IVS+D+P+G+
Sbjct: 133 TLCIVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTGW 178
>sp|P96051|YFOL_STRTR HYPOTHETICAL 29.9 KD PROTEIN IN FOLD-PBP2B INTERGENIC REGION
(ORF1091) >gi|1685111|gb|AAC44613.1| (U58210) orf1091
[Streptococcus thermophilus]
Length = 278
Score = 74.1 bits (179), Expect = 3e-12
Identities = 70/269 (26%), Positives = 123/269 (45%), Gaps = 17/269 (6%)
Query: 221 KGEHKGQNGKILIIGGSENYYGAPYLAGKASSYLVDLVYLLTPERVARRIDDPNLIVREV 280
+G HKG G++L++GG Y GA +A A + + L+T I + + E
Sbjct: 17 RGSHKGSYGRVLLVGGLYPYGGAIIMA--AIACVNSGAGLVTVATDRENIIALHAHLPEA 74
Query: 281 PGDNLRGEHIELALELSERVDAVVIGPGIGTKEETKEFVLEFIK---KVEKPMVIDADGL 337
+LR E L+ D ++IG G+G +EET ++ LE + + + +V+D L
Sbjct: 75 MAFDLR--ETERFLDKLRAADVILIGSGLG-EEETADWALELVLANIRSNQNLVVDGSAL 131
Query: 338 KIIA-EDLDALKNRKFVLTPHAGEFKLLFGVKPGGSLVEKSKLVKEKAEEINGVILLKGA 396
++A ++ +L +LTPH E++ L G+ V ++ E+ + +++ K
Sbjct: 132 NLLAKKNQSSLPKCHLILTPHQKEWERLSGLAISEQSVSNTQRALEEFQS-GTILVAKSH 190
Query: 397 YDIVSDGKVWLYNKTGNRGMTTGGTGDVLAGVVGSFLA--LGNEPLRAASAGAFLTGFSG 454
V G + + G TGG GD LAG+V FLA + +A +L
Sbjct: 191 KTAVYQGAEVTHLEVGGPYQATGGMGDTLAGMVAGFLAQFASTDSYKAVIVATWLHSAIA 250
Query: 455 DLVYEEKGEAFTALD--VANKIPLALKRI 481
D + E A+ L ++ IP +K++
Sbjct: 251 DNIAE---NAYVVLPTRISKAIPSWMKKL 276
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190270788
Number of Sequences: 2977
Number of extensions: 8849969
Number of successful extensions: 19781
Number of sequences better than 1.0e-10: 40
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 19617
Number of HSP's gapped (non-prelim): 54
length of query: 484
length of database: 189,106,746
effective HSP length: 56
effective length of query: 428
effective length of database: 155,591,474
effective search space: 66593150872
effective search space used: 66593150872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)