BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1150 (pyrD-like) DE:DIHYDROOROTATE DEHYDROGENASE ELECTRON
TRANSFER SUBUNIT
(247 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 505 e-142
sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 466 e-130
pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii ... 404 e-112
sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 209 3e-53
emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit relate... 163 2e-39
gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglo... 152 4e-36
sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 151 9e-36
gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermo... 116 2e-25
emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus... 116 2e-25
pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain ... 116 2e-25
pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyr... 114 1e-24
pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyr... 112 4e-24
gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g... 108 9e-23
sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|9... 107 1e-22
emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B... 107 1e-22
pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyr... 107 1e-22
sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 106 3e-22
sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 106 3e-22
sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANS... 104 1e-21
dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electro... 101 9e-21
pir||F75069 hydrogenase, chain gamma related protein PAB1737 - P... 101 1e-20
sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 98 8e-20
pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis ... 87 2e-16
sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECT... 87 3e-16
pir||H72390 dihydroorotate dehydrogenase electron transfer prote... 84 2e-15
>sp|Q9UXV5|PYRK_PYRAB PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451842|pir||D75027 dihydroorotate dehydrogenase
electron transfer chain PAB1150 - Pyrococcus abyssi
(strain Orsay) >gi|5459172|emb|CAB50658.1| (AJ248288)
DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
[Pyrococcus abyssi]
Length = 247
Score = 505 bits (1286), Expect = e-142
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MLRRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVG 60
MLRRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVG
Sbjct: 1 MLRRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVG 60
Query: 61 PFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVLIY 120
PFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVLIY
Sbjct: 61 PFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVLIY 120
Query: 121 GARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAK 180
GARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAK
Sbjct: 121 GARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAK 180
Query: 181 VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLKGTEIGKFSRLPD 240
VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLKGTEIGKFSRLPD
Sbjct: 181 VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLKGTEIGKFSRLPD 240
Query: 241 GRIKSLR 247
GRIKSLR
Sbjct: 241 GRIKSLR 247
>sp|O57738|PYRK_PYRHO PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 247
Score = 466 bits (1186), Expect = e-130
Identities = 221/247 (89%), Positives = 235/247 (94%)
Query: 1 MLRRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVG 60
MLRRV +KETWEVAKN++AFRFDEKLDF PGQFIM+WLPG+NEKPFSLADKDLIVVK+VG
Sbjct: 1 MLRRVTLKETWEVAKNIKAFRFDEKLDFTPGQFIMVWLPGVNEKPFSLADKDLIVVKRVG 60
Query: 61 PFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVLIY 120
PFTSKLF LEEGDY+WIRGPYGNGFK V+GKVALVAGGIGIPPIYALAK+G LEEKVLIY
Sbjct: 61 PFTSKLFTLEEGDYLWIRGPYGNGFKEVKGKVALVAGGIGIPPIYALAKHGKLEEKVLIY 120
Query: 121 GARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAK 180
GAR K+ELA LDIENYVDE+VITTDDGS GIKGFPTDVLA+RK EFSQVYACGPE+MLAK
Sbjct: 121 GARGKDELALLDIENYVDEIVITTDDGSYGIKGFPTDVLAKRKEEFSQVYACGPEIMLAK 180
Query: 181 VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLKGTEIGKFSRLPD 240
VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLK TE GKF+RLPD
Sbjct: 181 VLEIMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLKDTEFGKFTRLPD 240
Query: 241 GRIKSLR 247
GRIK LR
Sbjct: 241 GRIKGLR 247
>pir||E71212 hypothetical protein PH1965 - Pyrococcus horikoshii
>gi|3258409|dbj|BAA31092.1| (AP000007) 213aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 213
Score = 404 bits (1027), Expect = e-112
Identities = 192/213 (90%), Positives = 203/213 (95%)
Query: 35 MLWLPGINEKPFSLADKDLIVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVAL 94
M+WLPG+NEKPFSLADKDLIVVK+VGPFTSKLF LEEGDY+WIRGPYGNGFK V+GKVAL
Sbjct: 1 MVWLPGVNEKPFSLADKDLIVVKRVGPFTSKLFTLEEGDYLWIRGPYGNGFKEVKGKVAL 60
Query: 95 VAGGIGIPPIYALAKYGNLEEKVLIYGARSKEELATLDIENYVDEVVITTDDGSAGIKGF 154
VAGGIGIPPIYALAK+G LEEKVLIYGAR K+ELA LDIENYVDE+VITTDDGS GIKGF
Sbjct: 61 VAGGIGIPPIYALAKHGKLEEKVLIYGARGKDELALLDIENYVDEIVITTDDGSYGIKGF 120
Query: 155 PTDVLARRKVEFSQVYACGPEVMLAKVLEIMNYERTQISAERYMKCGIGICGSCALGPYL 214
PTDVLA+RK EFSQVYACGPE+MLAKVLEIMNYERTQISAERYMKCGIGICGSCALGPYL
Sbjct: 121 PTDVLAKRKEEFSQVYACGPEIMLAKVLEIMNYERTQISAERYMKCGIGICGSCALGPYL 180
Query: 215 VCRDGPVFTGEQLKGTEIGKFSRLPDGRIKSLR 247
VCRDGPVFTGEQLK TE GKF+RLPDGRIK LR
Sbjct: 181 VCRDGPVFTGEQLKDTEFGKFTRLPDGRIKGLR 213
>sp|Q58841|PYRK_METJA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2127836|pir||E64480 cytochrome-c3 hydrogenase gamma
chain homolog - Methanococcus jannaschii
>gi|1592091|gb|AAB99455.1| (U67585) cytochrome-c3
hydrogenase, gamma chain [Methanococcus jannaschii]
Length = 257
Score = 209 bits (526), Expect = 3e-53
Identities = 114/245 (46%), Positives = 150/245 (60%), Gaps = 9/245 (3%)
Query: 7 IKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVGPFTSKL 66
IKE E + V+ F D+ DF PGQF MLWLPG++EKPF + K+ V +VG FT K+
Sbjct: 9 IKEIIEESPTVKTFVVDKDFDFKPGQFAMLWLPGVDEKPFGFSSKNSFSVARVGEFTKKM 68
Query: 67 FKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLE--EKVLIYGARS 124
+L+EGD + +RGPYG F+ + KV VAGGIG PI + + + E I GAR+
Sbjct: 69 HELKEGDIIGVRGPYGTYFEPIGDKVLAVAGGIGAAPIITAVEEFSKQGIEITTILGART 128
Query: 125 KEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLAR--RKVEFSQVYACGPEVMLAKVL 182
KEEL LD V + I TDDGS G KGF T+ + ++ +F + CGPE+M+ KV+
Sbjct: 129 KEELLFLDRFEKVSRLEICTDDGSFGFKGFTTEKMKEVLKEEKFDLIITCGPEIMMKKVV 188
Query: 183 EIMNYER--TQISAERYMKCGIGICGSCALGP--YLVCRDGPVFTGEQLKG-TEIGKFSR 237
EI N Q+S ERYMKCGIGICG C + VC+DGPVF G++LK E GK+ R
Sbjct: 189 EIANEYNIPVQVSMERYMKCGIGICGQCCVDDEGLCVCKDGPVFWGDKLKFIREFGKYKR 248
Query: 238 LPDGR 242
G+
Sbjct: 249 DASGK 253
>emb|CAC11546.1| (AL445064) nife hydrogenase gamma subunit related protein
[Thermoplasma acidophilum]
Length = 250
Score = 163 bits (409), Expect = 2e-39
Identities = 95/234 (40%), Positives = 131/234 (55%), Gaps = 13/234 (5%)
Query: 2 LRRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLA---DKDLIVVKK 58
+ R+ + + + AKNVR F D PGQF+M+WLPG+ E P SL+ I VK
Sbjct: 1 MNRITVDQVRDEAKNVRTLFFRWDHDVKPGQFVMVWLPGLGEIPMSLSYVGSPKGITVKA 60
Query: 59 VGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVL 118
G + + +E G +IRGPYGNGF+ G+ ++ GG GI + +A +
Sbjct: 61 YGKVSQAMIDMEPGHEFYIRGPYGNGFQIESGRKLIIGGGSGIASLLPIAD----SDTDA 116
Query: 119 IYGARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVE-FSQVYACGPEVM 177
+ A++KEEL D + I TDDGS G GFP + L R + + ++Y CGPE M
Sbjct: 117 LISAKTKEELIFTD-RFPESRLFIATDDGSEGFHGFPHEFLDRLDISVYRKIYVCGPEPM 175
Query: 178 LAKVLE---IMNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVFTGEQLK 228
L +V++ MN R + S ER MKCGIGIC SC++G VCR GPVF EQL+
Sbjct: 176 LYRVMQKLASMN-ARAEFSLERTMKCGIGICDSCSVGGLQVCRQGPVFDIEQLR 228
>gi|11498139 cytochrome-c3 hydrogenase, subunit gamma [Archaeoglobus fulgidus]
>gi|9297031|sp|O29722|PYRK_ARCFU PROBABLE DIHYDROOROTATE
DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451846|pir||H69315 cytochrome-c3 hydrogenase,
subunit gamma homolog - Archaeoglobus fulgidus
>gi|2650096|gb|AAB90709.1| (AE001068) cytochrome-c3
hydrogenase, subunit gamma [Archaeoglobus fulgidus]
Length = 232
Score = 152 bits (380), Expect = 4e-36
Identities = 88/229 (38%), Positives = 128/229 (55%), Gaps = 12/229 (5%)
Query: 7 IKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLADKDLIVVKKVGPFTSKL 66
I + + V F L PGQF+M+++PG E P SL+ + + VK VG T+ L
Sbjct: 6 ITQIERLTDEVATLYFSISLRSYPGQFVMVYVPGCEEIPLSLSSSNSVTVKAVGETTASL 65
Query: 67 FKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKY-GNLEEKV-LIYGARS 124
+EG YV +RG +G+ F + + +VAGGIGI P+ L +Y KV ++YG R+
Sbjct: 66 INAKEGQYVGVRGAFGSAF-TPSKRALIVAGGIGIAPMKYLYEYLMKCGSKVSVVYGERT 124
Query: 125 KEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKV-EFSQVYACGPEVMLAKVLE 183
+ L LD D + +TT+DGS G+KG D L K+ E+ ++Y CG E ML +
Sbjct: 125 AKNLFWLD---KFDRITVTTEDGSFGLKGTVLDALKLEKLDEYEKIYVCGSEGMLRATYD 181
Query: 184 IMN----YERTQISAERYMKCGIGICGSCALGPYL-VCRDGPVFTGEQL 227
+ ++ + S ERYM+CGIG+CGSC + L VC DGPVF +L
Sbjct: 182 FLKERDALDKAEFSLERYMRCGIGVCGSCVIENGLRVCADGPVFNASEL 230
>sp|O27280|PYRK_METTH PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451852|pir||H69028 cytochrome-c3 hydrogenase, gamma
subunit - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2622322|gb|AAB85701.1| (AE000889)
cytochrome-c3 hydrogenase, gamma subunit
[Methanobacterium thermoautotrophicum]
Length = 266
Score = 151 bits (377), Expect = 9e-36
Identities = 98/253 (38%), Positives = 142/253 (55%), Gaps = 19/253 (7%)
Query: 7 IKETWEVAKNVRAFRF--DEKLDFIPGQFIMLWLPGINEKPFSLADKDL------IVVKK 58
IK E +++V+ F F D + + PGQF+M+W +EKP S++ D I +++
Sbjct: 12 IKRIVEESESVKTFIFSWDFRREVRPGQFVMVW-DFRDEKPMSVSLIDPVRSEIGISIRR 70
Query: 59 VGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVL 118
VG FT ++ L EGD + IRGPYG GF+ + + LV GGIG+ P+ ALA +
Sbjct: 71 VGEFTDRVHGLSEGDLLGIRGPYGRGFELMGRDILLVGGGIGMAPLAALADEATARGMRV 130
Query: 119 --IYGARSKEELATLD-IENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPE 175
+ AR+ +EL LD +E + TDDGS G KGF + L + CGPE
Sbjct: 131 DALVAARTADELLFLDRLEAAGVNISTCTDDGSCGFKGFAHERLLTLEENHDMAAVCGPE 190
Query: 176 VMLAKVLEIMNYER---TQISAERYMKCGIGICGSCALGP--YLVCRDGPVFTGEQL-KG 229
M+ +V+ I++ ER Q+S ERYMKC +GICG C L + VC +GPVF ++L +
Sbjct: 191 PMMFQVMRILD-ERDVPAQLSLERYMKCAVGICGQCCLDDTGFRVCAEGPVFWSQELSRV 249
Query: 230 TEIGKFSRLPDGR 242
E G++ R P GR
Sbjct: 250 REFGRYRRDPAGR 262
>gb|AAB94934.1| (AF039208) NiFe hydrogenase gamma subunit [Thermococcus litoralis]
Length = 296
Score = 116 bits (289), Expect = 2e-25
Identities = 94/268 (35%), Positives = 132/268 (49%), Gaps = 50/268 (18%)
Query: 2 LRRVMIKETWEVAK--NVRAFRFD-----EKLDFIPGQFIMLWLPGINEKPFSLADKDL- 53
L RV + +++ + + FRF+ E F PGQF+ L +PGI E P S+ +
Sbjct: 21 LERVRVLRVYQLTELEKLFLFRFEDPTIAENWTFKPGQFVQLTIPGIGEVPISVCSSPMR 80
Query: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
+ ++K G T+ + KL+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 81 QGFFELCIRKAGRVTTVVHKLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 140
Query: 104 ---IYALA---KYGNLE--------EKVLIYGARSKEELATLDI---ENYVDEVVITTDD 146
+YA+ KYGN+ + +L Y KE A DI EN +T D
Sbjct: 141 SVFLYAMDNRWKYGNITFINTARYGKDLLFY----KELEAMKDIAEAENVKIIQSVTRDP 196
Query: 147 GSAGIKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMK 199
G+KG P + V A + + V CGP M V E ++NY E ++ ER MK
Sbjct: 197 DWPGLKGRPQNFIVEANTNPKNTAVAICGPPRMYKDVFESLINYGYRPENIYVTLERMMK 256
Query: 200 CGIGICGSCALGP----YLVCRDGPVFT 223
CGIG CG C +G VC+DGPVFT
Sbjct: 257 CGIGKCGHCNVGTSTSWKYVCKDGPVFT 284
>emb|CAA53035.1| (X75255) hydrogenase (gamma subunit) [Pyrococcus furiosus]
Length = 291
Score = 116 bits (288), Expect = 2e-25
Identities = 86/264 (32%), Positives = 127/264 (47%), Gaps = 42/264 (15%)
Query: 2 LRRVMIKETWEVAKNVRAFRFD-------EKLDFIPGQFIMLWLPGINEKPFSLADKDL- 53
L RV + + + + + + F F EK F PGQF+ L +PG+ E P S+ +
Sbjct: 16 LHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTIPGVGEVPISICSSPMR 75
Query: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
+ ++K G T+ + +L+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 76 KGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 135
Query: 104 ---IYALA---KYGNLE-------EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAG 150
+YA+ KYGN+ K L++ + + EN +T D G
Sbjct: 136 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPG 195
Query: 151 IKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
+KG P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 196 LKGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIG 255
Query: 204 ICGSCALGP----YLVCRDGPVFT 223
CG C +G +C+DGPVFT
Sbjct: 256 KCGHCNVGTSTSWKYICKDGPVFT 279
>pir||S48834 cytochrome-c3 hydrogenase (EC 1.12.2.1) gamma chain - Pyrococcus
furiosus
Length = 292
Score = 116 bits (288), Expect = 2e-25
Identities = 86/264 (32%), Positives = 127/264 (47%), Gaps = 42/264 (15%)
Query: 2 LRRVMIKETWEVAKNVRAFRFD-------EKLDFIPGQFIMLWLPGINEKPFSLADKDL- 53
L RV + + + + + + F F EK F PGQF+ L +PG+ E P S+ +
Sbjct: 17 LHRVKVLKVYSLTETEKLFLFRFEDPELAEKWTFKPGQFVQLTIPGVGEVPISICSSPMR 76
Query: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
+ ++K G T+ + +L+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 77 KGFFELCIRKAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 136
Query: 104 ---IYALA---KYGNLE-------EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAG 150
+YA+ KYGN+ K L++ + + EN +T D G
Sbjct: 137 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPNWPG 196
Query: 151 IKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
+KG P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 197 LKGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPENIFVTLERRMKCGIG 256
Query: 204 ICGSCALGP----YLVCRDGPVFT 223
CG C +G +C+DGPVFT
Sbjct: 257 KCGHCNVGTSTSWKYICKDGPVFT 280
>pir||H71074 probable cytochrome-c3 hydrogenase gamma chain - Pyrococcus
horikoshii >gi|3257711|dbj|BAA30394.1| (AP000005) 292aa
long hypothetical cytochrome-c3 hydrogenase gamma chain
[Pyrococcus horikoshii]
Length = 292
Score = 114 bits (282), Expect = 1e-24
Identities = 85/264 (32%), Positives = 128/264 (48%), Gaps = 42/264 (15%)
Query: 2 LRRVMIKETWEVAKNVRAFRF---DEKL----DFIPGQFIMLWLPGINEKPFSLADKDL- 53
L RV + + +++ + + F F D KL F PGQF+ L +PG+ E P S+ +
Sbjct: 17 LHRVKVLKVYDLTEKEKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICSSPMR 76
Query: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
+ +++ G T+ + +L+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 77 RGFFELCIRRAGRVTTVVHRLKPGDIVLVRGPYGNGFPVDEWEGMDLLLIAAGLGAAPLR 136
Query: 104 ---IYALA---KYGNLE-------EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAG 150
+YA+ KYGN+ K L++ + + EN +T D G
Sbjct: 137 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAIKDLAEAENVKIIQSVTRDPNWPG 196
Query: 151 IKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
+ G P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 197 LHGRPQQFIVEANTNPKNTAVAICGPPRMYKSVFEALINYGYRPENIYVTLERKMKCGIG 256
Query: 204 ICGSCALGP----YLVCRDGPVFT 223
CG C +G +C+DGPVFT
Sbjct: 257 KCGHCVVGTSTSLKYICKDGPVFT 280
>pir||D75133 cytochrome-c3 hydrogenase, chain gamma PAB1785 - Pyrococcus abyssi
(strain Orsay) >gi|5458292|emb|CAB49781.1| (AJ248285)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 292
Score = 112 bits (278), Expect = 4e-24
Identities = 85/264 (32%), Positives = 127/264 (47%), Gaps = 42/264 (15%)
Query: 2 LRRVMIKETWEVAKNVRAFRF---DEKL----DFIPGQFIMLWLPGINEKPFSLADKDL- 53
L RV + + +++ + + F F D KL F PGQF+ L +PG+ E P S+ +
Sbjct: 17 LHRVKVLKVYDLTEREKLFLFRFEDPKLAETWTFKPGQFVQLTIPGVGEVPISICSSPMR 76
Query: 54 -----IVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFKSVEGK---VALVAGGIGIPP-- 103
+ +++ G T+ + +L+ GD V +RGPYGNGF E + + L+A G+G P
Sbjct: 77 KGFFELCIRRAGRVTTVVHRLKPGDTVLVRGPYGNGFPVDEWEGMDLLLIAAGLGTAPLR 136
Query: 104 ---IYALA---KYGNLE-------EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAG 150
+YA+ KYGN+ K L++ + + EN +T D G
Sbjct: 137 SVFLYAMDNRWKYGNITFINTARYGKDLLFYKELEAMKDLAEAENVKIIQSVTRDPDWPG 196
Query: 151 IKGFPTD--VLARRKVEFSQVYACGPEVMLAKVLE-IMNY----ERTQISAERYMKCGIG 203
+ G P V A + + V CGP M V E ++NY E ++ ER MKCGIG
Sbjct: 197 LHGRPQQFIVEANTNPKNTAVAICGPPRMYKAVFESLINYGYRPENIYVTLERRMKCGIG 256
Query: 204 ICGSCALGP----YLVCRDGPVFT 223
CG C G +C+DGPVFT
Sbjct: 257 KCGHCVAGTSTSWKYICKDGPVFT 280
>gb|AAF61852.1|AF176650_2 (AF176650) sulfhydrogenase II subunit g [Pyrococcus furiosus]
Length = 288
Score = 108 bits (266), Expect = 9e-23
Identities = 76/250 (30%), Positives = 117/250 (46%), Gaps = 55/250 (22%)
Query: 23 DEKLDFIPGQFIMLWLPGINEKPFSLADKDL-----IVVKKVGPFTSKLFKLEEGDYVWI 77
+E F PGQF+++ + G E P SL + +++VG T + K+ EGD + I
Sbjct: 34 EENFTFKPGQFVIVDIRGFGEFPISLCSSPTRRPIQLCIRRVGRMTKFIHKMNEGDIIGI 93
Query: 78 RGPYGNGFKS--VEG-KVALVAGGIGIPPIYALAKY----GNLEEKVLIYGARSKEELAT 130
RGPYGNGF +EG + L+AGG+G+ P+ ++ Y G E+ L YG +S E++
Sbjct: 94 RGPYGNGFPMDLMEGSNLILIAGGLGMAPLRSVLWYAIDSGKYEKIYLFYGTKSYEDIL- 152
Query: 131 LDIENYVDEVVITTDDG--------------------------SAGIKGFPTDVLARRKV 164
+ DE++ G KG TD+ +
Sbjct: 153 -----FRDEIIHLLKHGEKLNCHVKLAYEVETPSCIYLERGFSEKVCKGVVTDLFRGEEF 207
Query: 165 EFSQVYA--CGPEVMLAKVLEI-----MNYERTQISAERYMKCGIGICGSCALGPYL--- 214
+ YA CGP VM V+ ++ R ++ ER M+CG+G CG C +G +
Sbjct: 208 DVENSYALICGPPVMYKYVIRELLDRGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIK 267
Query: 215 -VCRDGPVFT 223
+C+DGPVFT
Sbjct: 268 YICKDGPVFT 277
>sp|P26475|ASRB_SALTY ANAEROBIC SULFITE REDUCTASE SUBUNIT B >gi|96706|pir||B38453
anaerobic sulfite reduction protein B - Salmonella
typhimurium >gi|153883|gb|AAA99276.1| (M57706) anaerobic
sulfite reductase [Salmonella typhimurium]
Length = 272
Score = 107 bits (265), Expect = 1e-22
Identities = 78/223 (34%), Positives = 118/223 (51%), Gaps = 36/223 (16%)
Query: 31 GQFIMLWLPGINEKPFSLADK-----DLIVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGF 85
GQF+ + LP + E P S++D DL++ + VG TS LF L+EGD VW+RG YGNG+
Sbjct: 45 GQFVEVSLPRVGEAPISVSDYGDGWIDLLI-RNVGKVTSALFTLKEGDNVWLRGCYGNGY 103
Query: 86 --KSVEGK-VALVAGGIGIPPIYALAKY--------GNLEEKVLIYGARS----KEELAT 130
++ K + +VAGG G+ P+ L +Y G L + +L Y R KEE+AT
Sbjct: 104 PVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQL-DMILGYKNRDCVLYKEEMAT 162
Query: 131 LDIENYVDEVVITTDDGSAGIK---GFPTDVLA---RRKVEFSQVYACGPEVMLAKVLEI 184
++ +V+T D+G A + G TD LA ++ Q GP +M+ +++
Sbjct: 163 WRGKH---NLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVKM 219
Query: 185 -----MNYERTQISAERYMKCGIGICGSCALGPYLVCRDGPVF 222
+ E+ + ER M C +G CG C +G VC DGP+F
Sbjct: 220 LLQKGLKPEQIWVDYERRMACSVGKCGHCRMGEVYVCTDGPIF 262
>emb|CAC11195.1| (AL445063) anaerobic sulfite reduction protein B related protein
[Thermoplasma acidophilum]
Length = 244
Score = 107 bits (265), Expect = 1e-22
Identities = 78/223 (34%), Positives = 117/223 (51%), Gaps = 24/223 (10%)
Query: 22 FDEKLDFIPGQFIMLWLPGINEKPFSLA----DKDLIVVKKVGPFTSKLFKLEEGDYVWI 77
F +K D GQF M+ + G+ E P S+A + +K VG T + + + + +
Sbjct: 11 FQKKTDSHAGQFYMVSVDGVGESPISVASGYGNPLTFSIKAVGSVTRYIMDHRDIE-IGL 69
Query: 78 RGPYGNGF--KSVEGKVALVAGGIGIPPIYALAK----YGNLEEKVLIYGARSKEELATL 131
RGPYGN + K + VA +AGGIGIPPI AL + GNL++ ++YGARS ++
Sbjct: 70 RGPYGNEWPWKGADHIVA-IAGGIGIPPIKALIEDMESEGNLDDLTVLYGARSPGDIVYK 128
Query: 132 -DIENYVD--EVVITTDDGSAGIKGF----PTDVLARRKVEFSQVYACGPEVMLA-KVLE 183
+IE + ++ IT D G A G T + +K + + GP +M+ V E
Sbjct: 129 NEIEAWKKKLDLQITVDSGDASWNGHVGVVTTLIPGVKKFNGGRAFVIGPPIMMKFSVQE 188
Query: 184 IMNY----ERTQISAERYMKCGIGICGSCALGPYLVCRDGPVF 222
++ E +S ER M+CGIG+CG C LG + VC GP+F
Sbjct: 189 LIKQGFRPENIYLSLERRMECGIGVCGHCNLGQWYVCEAGPIF 231
>pir||H75069 cytochrome-c3 hydrogenase, chain gamma PAB0639 - Pyrococcus abyssi
(strain Orsay) >gi|5458373|emb|CAB49861.1| (AJ248286)
cytochrome-c3 hydrogenase, subunit gamma [Pyrococcus
abyssi]
Length = 288
Score = 107 bits (265), Expect = 1e-22
Identities = 76/244 (31%), Positives = 117/244 (47%), Gaps = 43/244 (17%)
Query: 23 DEKLDFIPGQFIMLWLPGINEKPFSLADKDL-----IVVKKVGPFTSKLFKLEEGDYVWI 77
+E F PGQF+++ + G E P SL + +++VG T + K EGD + +
Sbjct: 34 EESFTFKPGQFVIVDIRGHGEFPISLCSSPTRKPIQLCIRRVGRLTRLIHKFSEGDVIGV 93
Query: 78 RGPYGNGF--KSVEG-KVALVAGGIGIPPIYALAKY----GNLEEKVLIYGARSKEELAT 130
RGPYGNGF + +EG + LVAGG+G+ P+ ++ Y G E+ L YG +S E++
Sbjct: 94 RGPYGNGFPLEKMEGATLILVAGGLGMAPLRSVLWYAIDSGKFEKIYLYYGTKSYEDILF 153
Query: 131 LDIENYVDE--------------------VVITTDDGSAGIKGFPTDVLARRKVEFSQVY 170
D Y+ + V + KG TD+ + Y
Sbjct: 154 RDEIIYLLKHGEKLNCHVKLAYEVETPSCVYLEKGFSEKVCKGLVTDLFRGEHFDVENSY 213
Query: 171 A--CGPEVMLAKVLEI-----MNYERTQISAERYMKCGIGICGSCALGPYL----VCRDG 219
A CGP VM V++ ++ R ++ ER M+CG+G CG C +G + +CRDG
Sbjct: 214 ALICGPPVMYKFVIKELLDKGLSPGRIYMTLERRMRCGVGKCGHCIVGTSVSIKYICRDG 273
Query: 220 PVFT 223
PVF+
Sbjct: 274 PVFS 277
>sp|P56968|PYRK_LACLC DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
Length = 262
Score = 106 bits (262), Expect = 3e-22
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 27/226 (11%)
Query: 29 IPGQFIMLWLPG---INEKPFSLAD-----KDLIVVKKVGPFTS---KLFKLEEGDYVWI 77
+PGQF+ L +P + +P S++ K ++ ++G T+ KL KLE G V +
Sbjct: 35 LPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDV 94
Query: 78 RGPYGNGFKSVE----GKVALVAGGIGIPPIYALAKY---GNLEEKVLIYGARSKEELAT 130
GP GNGF E K+ ++ GGIG+PP+Y LAK + +L+ A ++
Sbjct: 95 MGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILE 154
Query: 131 LDIENYVDEVV-ITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAKVLEIMN-YE 188
+ N + + I TDDGS G KG ++ E +Y CG ML V + + E
Sbjct: 155 NEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLE 214
Query: 189 RTQISAERYMKCGIGICGSCA-------LGPYLVCRDGPVFTGEQL 227
R IS E M CGIG C +C VC DGPVF G+QL
Sbjct: 215 RLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQL 260
>sp|P46536|PYRK_BACCL DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|2126771|pir||I40170 hypothetical protein 2 -
Bacillus caldolyticus >gi|312444|emb|CAA51740.1|
(X73308) ORF2 [Bacillus caldolyticus]
Length = 257
Score = 106 bits (262), Expect = 3e-22
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 3 RRVMIKETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPG----INEKPFSLADKD------ 52
+R++ + T+E+ + R + + PGQF+ + + + +P SL D
Sbjct: 12 QRLIAERTYELTLSGRLVQEMRQ----PGQFVHVKVAASADPLLRRPLSLCHIDHKQGQC 67
Query: 53 LIVVKKVGPFTSKLFKLEEGDYVWIRGPYGNGFK----SVEGKVALVAGGIGIPPIYALA 108
I+ ++ G T+ L + + GD V + GP GNGF + LV GGIG+PP+Y LA
Sbjct: 68 TIIYRQEGKGTALLAQKQPGDTVDVLGPLGNGFPLEAAPAGSRALLVGGGIGVPPLYELA 127
Query: 109 KYGNLE--EKVLIYGARSKEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEF 166
K + V + G ++K + + E + TDDGS G G TDV+ R +EF
Sbjct: 128 KQLTKRGVKVVSVLGFQTKAAVFYEEEFAAFGETHVATDDGSHGTAGRVTDVIEARSLEF 187
Query: 167 SQVYACGPEVMLAKVLEIMNYERTQISAERYMKCGIGICGSCA-------LGPYLVCRDG 219
+YACGP+ ML + E +S E M CG+G C +C VC DG
Sbjct: 188 DVLYACGPKPMLRALAERFPNRPVYLSLEERMGCGVGACFACVCHVPGSETAYKKVCSDG 247
Query: 220 PVF 222
PVF
Sbjct: 248 PVF 250
>sp|P25983|PYRK_BACSU DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|98369|pir||G39845 dihydroorotate dehydrogenase
(electron transfer subunit) pyrDII - Bacillus subtilis
>gi|143391|gb|AAA21271.1| (M59757) unknown [Bacillus
subtilis] >gi|2633926|emb|CAB13427.1| (Z99112)
dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus subtilis]
Length = 256
Score = 104 bits (257), Expect = 1e-21
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 27/223 (12%)
Query: 30 PGQFIMLWLPG----INEKPFSLADKDL------IVVKKVGPFTSKLFKLEEGDYVWIRG 79
PGQF+ L + + +P S+AD + I+ + G T L ++G+ V + G
Sbjct: 34 PGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGEGTRLLSLKQQGELVDVLG 93
Query: 80 PYGNGFKSVE---GKVAL-VAGGIGIPPIYALAKYGNLEEK----VLIYGARSKEELATL 131
P GNGF E GK AL V GG+G+PP+ L+K L EK + + G +S +++
Sbjct: 94 PLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSK--RLIEKGVNVIHVLGFQSAKDVFYE 151
Query: 132 DIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAKVLEIMNYERTQ 191
+ + + T DGS G GF TDV+ R+K+EF + +CGP ML + + ++
Sbjct: 152 EECRQYGDTYVATADGSYGETGFVTDVIKRKKLEFDILLSCGPTPMLKALKQEYAHKEVY 211
Query: 192 ISAERYMKCGIGICGSCA-------LGPYLVCRDGPVFTGEQL 227
+S E M CGIG C +C VC DGPVF +++
Sbjct: 212 LSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVFKAQEV 254
>dbj|BAB06254.1| (AP001515) dihydroorotate dehydrogenase (electron transfer subunit)
[Bacillus halodurans]
Length = 259
Score = 101 bits (249), Expect = 9e-21
Identities = 74/220 (33%), Positives = 108/220 (48%), Gaps = 29/220 (13%)
Query: 30 PGQFIMLWLPGINE----KPFSLADKD------LIVVKKVGPFTSKLFKLEEGDYVWIRG 79
PGQF+ + + +E +P S+ D ++ + G T +L + G+ V I G
Sbjct: 35 PGQFVHVKVDDGSELLLRRPLSICHVDEQTSELTLLYRAEGQGTKRLAQKARGETVDILG 94
Query: 80 PYGNGFKS---VEGKVAL-VAGGIGIPPIYALAKYGNLEEK----VLIYGARSKEELATL 131
P G GF G+ AL + GGIG+PP+Y LAK L+ K + + G +S ++
Sbjct: 95 PLGQGFPLEAIASGETALLIGGGIGVPPLYYLAK--RLKAKGCHVINVLGFQSAKDSFYY 152
Query: 132 DIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAKVLEIMNYERTQ 191
+ + + + T DG+AG KGF T VL + + ++ VY+CGP ML V E ER
Sbjct: 153 EQFSQLGTTYVATVDGTAGTKGFVTHVLNQEALSYNVVYSCGPTPMLKAVSERFIGERAF 212
Query: 192 ISAERYMKCGIGICGSC---------ALGPYLVCRDGPVF 222
IS E M CGIG C +C +C DGPVF
Sbjct: 213 ISMEERMGCGIGACFACVCHVTGDEAGTAYRKICTDGPVF 252
>pir||F75069 hydrogenase, chain gamma related protein PAB1737 - Pyrococcus
abyssi (strain Orsay) >gi|5458371|emb|CAB49859.1|
(AJ248286) hydrogenase, subunit gamma related protein
[Pyrococcus abyssi]
Length = 278
Score = 101 bits (248), Expect = 1e-20
Identities = 80/230 (34%), Positives = 119/230 (50%), Gaps = 29/230 (12%)
Query: 30 PGQFIMLWLPGINEK-PFSLADKD------LIVVKKVGPFTSKLFKLEEGDYVW-IRGPY 81
PGQF+++ L E+ P ++AD D IV ++VG T +L EEGDY+ I GP
Sbjct: 30 PGQFVIIRLHERGERIPLTIADFDRDKGSITIVAQEVGKTTKELGTYEEGDYIHDILGPL 89
Query: 82 GN-GFKSVEGKVALVAGGIGIPPIYALAKYGNLEEK----VLIYGARSKEELATLD-IEN 135
GN G V +V GG+G+ IY +A+ ++EK + I G R+K+ + D +
Sbjct: 90 GNPSHVDKFGTVVMVGGGVGVAEIYPVARA--MKEKGNYVISILGFRTKDLVFWEDKLRK 147
Query: 136 YVDEVVITTDDGSAGIKGFPTDVLAR-----RKVEFSQVYACGPEVMLAKVLEIMNYE-- 188
DEV++TT+DGS G+KGF T L + RK++ V+A GP +M+ V E+
Sbjct: 148 VSDEVIVTTNDGSYGMKGFTTHALQKLIDEGRKIDL--VHAVGPAIMMKAVAELTKPYGI 205
Query: 189 RTQISAERYMKCGIGICGSCALGP----YLVCRDGPVFTGEQLKGTEIGK 234
+T S M G G+CG+C + C DGP F + E+ K
Sbjct: 206 KTVASLNPIMVDGTGMCGACRVTVGGEIKFACVDGPEFDAHLVDWDELMK 255
>sp|Q9X1X4|PYRK_THEMA PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451851|pir||G72230 hypothetical protein TM1639 -
Thermotoga maritima (strain MSB8)
>gi|4982212|gb|AAD36706.1|AE001806_16 (AE001806)
electron transfer protein, putative [Thermotoga
maritima]
Length = 282
Score = 98.3 bits (241), Expect = 8e-20
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 25/227 (11%)
Query: 30 PGQFIMLWLPGINEK-PFSLADKD------LIVVKKVGPFTSKLFKLEEGDYVW-IRGPY 81
PGQF+++ L E+ P ++AD +VVK VG T +L +EGD + + GP
Sbjct: 35 PGQFVVIRLHEKGERIPLTVADTKPEEGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPL 94
Query: 82 GNGFKSVE-GKVALVAGGIGIPPIYALAKY----GNLEEKVLIYGARSKEELATLDIENY 136
GN + G V LV GG+GI +Y +AK GN VL GAR+K+ L +D
Sbjct: 95 GNPSEIENYGNVLLVGGGVGIATLYPIAKALKEAGNNITTVL--GARTKDYLIMVDEFKE 152
Query: 137 VDEVVITTDDGSAGIKGFPTDVLAR--RKVEFSQVYACGPEVMLAKVLEIMNYE---RTQ 191
+ +V++ TDDGSAG+KG TD + + R+ +F +A GP +M+ K + E
Sbjct: 153 ISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMM-KFCTLKAREFGVPIW 211
Query: 192 ISAERYMKCGIGICGSCALGP----YLVCRDGPVFTGEQLKGTEIGK 234
+S M G G+CG+C + C DGP F GE++ E+ K
Sbjct: 212 VSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLK 258
>pir||E71288 probable hydrogenase, gamma chain (hydG) - syphilis spirochete
>gi|3323041|gb|AAC65704.1| (AE001245) hydrogenase, gamma
chain (hydG) [Treponema pallidum]
Length = 280
Score = 87.0 bits (212), Expect = 2e-16
Identities = 75/222 (33%), Positives = 110/222 (48%), Gaps = 28/222 (12%)
Query: 31 GQFIMLWLPG--INEKPFSLADKDL------IVVKKVGPFTSKLFKLEEGDYVWI-RGPY 81
GQF+++ L P ++AD +V++ VG T +L + E GD + + GP
Sbjct: 31 GQFVLVQLDDEYAERIPLTIADAHADEGWIALVIQTVGATTMRLCEKEVGDSISVVLGPL 90
Query: 82 GNG--FKSVEGKVALVAGGIGIPPIYALA----KYGNLEEKVLIYGARSKEELA-TLDIE 134
GN ++V G VA VAGG+G P+Y +A + GN ++I GAR+++ + ++
Sbjct: 91 GNPTLIENV-GTVACVAGGVGAAPLYPIAQAHKRAGN--HVIVILGARNRDLIIFEEEMR 147
Query: 135 NYVDEVVITTDDGSAGIKGFPTDVLARRKVEFS---QVYACGPEVMLAKVLEIMN--YER 189
DE+VI TDDGS G KG T+ L S +V A GP +M+ E R
Sbjct: 148 ALADELVIVTDDGSYGRKGLVTEPLRELCXRASCPQEVVAIGPPIMMKFCAETTRPFGIR 207
Query: 190 TQISAERYMKCGIGICGSCALGP----YLVCRDGPVFTGEQL 227
T +S M G G+CG C + VC DGP F G Q+
Sbjct: 208 TVVSLNTIMIDGTGMCGGCRVNVGSEIKFVCVDGPEFDGHQV 249
>sp|O67329|PYRK_AQUAE PROBABLE DIHYDROOROTATE DEHYDROGENASE ELECTRON TRANSFER SUBUNIT
>gi|7451841|pir||F70412 dihydroorotate dehydrogenase
electron transfer subunit - Aquifex aeolicus
>gi|2983725|gb|AAC07287.1| (AE000733) dihydroorotate
dehydrogenase electron transfer subunit [Aquifex
aeolicus]
Length = 251
Score = 86.6 bits (211), Expect = 3e-16
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 30 PGQFIML----WLPGINEKPFSLAD----KDLIVVKKVGPFTSKLFKLEEGDYVWIRGPY 81
PG F M+ + + F++AD K + G T L K + G+ + P
Sbjct: 36 PGHFAMIKPSDTYDPMGRRAFAVADIEEHKAVFYYDVYGKGTYLLSKRKPGERLKTFLPL 95
Query: 82 GNGFKSVEG-KVALVAGGIGIPPIYALAK-YGNLEEKVLI-YGARSKEELATLD-IENYV 137
G S EG K L+ GG+G+ + LAK ++ +KV I YG RS+E L ++ +E
Sbjct: 96 GKRLFSYEGDKHLLIGGGVGLAGLTLLAKKLRDMGKKVFIAYGGRSREHLGMVEWLEKEE 155
Query: 138 DEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAKVLEIMNYERTQISAERY 197
+ T+DGSAG KGF T++L ++ V+ACGP+ ML + E+ + S E
Sbjct: 156 FPYELFTNDGSAGRKGFVTEILKEFSTDWV-VHACGPKPMLKTIKEMKTGHKVYFSLEER 214
Query: 198 MKCGIGICGSCAL----GPY-LVCRDGPVFTGEQL 227
M CG G+C C + G + VC +GPV E++
Sbjct: 215 MACGWGVCLGCVVKTRDGKFKRVCYEGPVMPMEEV 249
>pir||H72390 dihydroorotate dehydrogenase electron transfer protein - Thermotoga
maritima (strain MSB8)
>gi|4980835|gb|AAD35421.1|AE001714_12 (AE001714)
dihydroorotate dehydrogenase electron transfer protein
[Thermotoga maritima]
Length = 217
Score = 83.9 bits (204), Expect = 2e-15
Identities = 70/227 (30%), Positives = 103/227 (44%), Gaps = 28/227 (12%)
Query: 8 KETWEVAKNVRAFRFDEKLDFIPGQFIMLWLPGINEKPFSLA---DKDLIVVKKVGPFTS 64
K+T V ++ F+E++DF PGQF+ML P + KPF L D I V+ G T
Sbjct: 9 KKTIRVNEDTWIVLFEERIDFSPGQFVMLETPKLVRKPFVLGYWEDHTAISVQVKGKGTK 68
Query: 65 KLFKLEEGDYVWIRGPYGNGFKSVEGKVALVAGGIGIPPIYALAKYGNLEEKVLIYGARS 124
+ +EE + + GP GNGF+ GK L+ + A K N++ ++ G+R+
Sbjct: 69 WI--VEEAEKIKGHGPLGNGFEK-PGKGLLIISPTCLTMAEAFRKKMNVD---VLVGSRT 122
Query: 125 KEELATLDIENYVDEVVITTDDGSAGIKGFPTDVLARRKVEFSQVYACGPEVMLAKVLEI 184
++ LD E V + + S G E+ G M E
Sbjct: 123 PFQI-PLDHETAVGDEEFLSKLSSTG--------------EYDWYLVSGSRGMEKVCWEH 167
Query: 185 MNYERTQISAERYMKCGIGICGSCAL----GPYLVCRDGPVFTGEQL 227
+ + S E YM CGIG C SCA+ G VC DGP+F G++L
Sbjct: 168 LKGKEVYFSLEEYMGCGIGACKSCAVFTKEGVKHVCTDGPIFRGDEL 214
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.143 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94759415
Number of Sequences: 2977
Number of extensions: 3969572
Number of successful extensions: 11799
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11724
Number of HSP's gapped (non-prelim): 27
length of query: 247
length of database: 189,106,746
effective HSP length: 51
effective length of query: 196
effective length of database: 158,583,909
effective search space: 31082446164
effective search space used: 31082446164
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)