BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1152 (PAB1152) DE:Hypothetical protein
(274 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75027 hypothetical protein PAB1152 - Pyrococcus abyssi (st... 562 e-159
pir||H71212 hypothetical protein PH1968 - Pyrococcus horikoshii ... 474 e-133
pir||F64499 hypothetical protein MJ1599 - Methanococcus jannasch... 262 3e-69
>pir||F75027 hypothetical protein PAB1152 - Pyrococcus abyssi (strain Orsay)
>gi|5459174|emb|CAB50660.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 274
Score = 562 bits (1433), Expect = e-159
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MLKCSICINDERVTRILIIDGKPICKECKAYLEHPPNKEKIREELEEILRKVDKAIVAYS 60
MLKCSICINDERVTRILIIDGKPICKECKAYLEHPPNKEKIREELEEILRKVDKAIVAYS
Sbjct: 1 MLKCSICINDERVTRILIIDGKPICKECKAYLEHPPNKEKIREELEEILRKVDKAIVAYS 60
Query: 61 GGKDSTVALYLAKVKYGIDVEAVMVDHGFMASQAIENAKRIAEHLNVPLTIIKKDYSDIF 120
GGKDSTVALYLAKVKYGIDVEAVMVDHGFMASQAIENAKRIAEHLNVPLTIIKKDYSDIF
Sbjct: 61 GGKDSTVALYLAKVKYGIDVEAVMVDHGFMASQAIENAKRIAEHLNVPLTIIKKDYSDIF 120
Query: 121 REALLKAKSPCRKCSKRTMEILRKYAIEHGYRYIITGHELPFGHHPYRIMSGGVLQIRML 180
REALLKAKSPCRKCSKRTMEILRKYAIEHGYRYIITGHELPFGHHPYRIMSGGVLQIRML
Sbjct: 121 REALLKAKSPCRKCSKRTMEILRKYAIEHGYRYIITGHELPFGHHPYRIMSGGVLQIRML 180
Query: 181 SMMSEEERLSILRELPFEFPELPGYTTNCLILGPALERYWEKHGYSFEHRRIAALVRYGL 240
SMMSEEERLSILRELPFEFPELPGYTTNCLILGPALERYWEKHGYSFEHRRIAALVRYGL
Sbjct: 181 SMMSEEERLSILRELPFEFPELPGYTTNCLILGPALERYWEKHGYSFEHRRIAALVRYGL 240
Query: 241 MSKEKALRKVEKPKVPEWQWRLVQEKLGIMIKPL 274
MSKEKALRKVEKPKVPEWQWRLVQEKLGIMIKPL
Sbjct: 241 MSKEKALRKVEKPKVPEWQWRLVQEKLGIMIKPL 274
>pir||H71212 hypothetical protein PH1968 - Pyrococcus horikoshii
>gi|3258412|dbj|BAA31095.1| (AP000007) 273aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 273
Score = 474 bits (1206), Expect = e-133
Identities = 216/267 (80%), Positives = 255/267 (94%)
Query: 1 MLKCSICINDERVTRILIIDGKPICKECKAYLEHPPNKEKIREELEEILRKVDKAIVAYS 60
MLKCSICINDER+TRILI+DG+PICKECK +LEHPP+KEKI++ELEEIL KVDKAIVAYS
Sbjct: 1 MLKCSICINDERITRILIVDGRPICKECKVFLEHPPDKEKIKKELEEILSKVDKAIVAYS 60
Query: 61 GGKDSTVALYLAKVKYGIDVEAVMVDHGFMASQAIENAKRIAEHLNVPLTIIKKDYSDIF 120
GGKDS VALYLAK KY IDVEAVMVDHGF+A QAI+NAK +A++L+VPLTIIK+DYSDIF
Sbjct: 61 GGKDSIVALYLAKEKYSIDVEAVMVDHGFIAPQAIKNAKNVAKYLDVPLTIIKRDYSDIF 120
Query: 121 REALLKAKSPCRKCSKRTMEILRKYAIEHGYRYIITGHELPFGHHPYRIMSGGVLQIRML 180
REALLKAKSPCRKCS+RTMEILRKYA++ GYRY+ITGHELPFGHHPYR+MSGG++Q+R+L
Sbjct: 121 REALLKAKSPCRKCSRRTMEILRKYALKKGYRYMITGHELPFGHHPYRLMSGGIIQVRIL 180
Query: 181 SMMSEEERLSILRELPFEFPELPGYTTNCLILGPALERYWEKHGYSFEHRRIAALVRYGL 240
S+MSEEER+ IL++LP E PELPGYT+NCLILGPAL+R+WE+HGYSFEHRRIAALVRYGL
Sbjct: 181 SLMSEEERMKILKKLPVELPELPGYTSNCLILGPALQRFWERHGYSFEHRRIAALVRYGL 240
Query: 241 MSKEKALRKVEKPKVPEWQWRLVQEKL 267
++KEKAL+KV+KP+VP+WQW LV++KL
Sbjct: 241 LNKEKALKKVQKPEVPQWQWELVKKKL 267
>pir||F64499 hypothetical protein MJ1599 - Methanococcus jannaschii
>gi|1500496|gb|AAB99626.1| (U67600) M. jannaschii
predicted coding region MJ1599 [Methanococcus
jannaschii]
Length = 277
Score = 262 bits (663), Expect = 3e-69
Identities = 127/264 (48%), Positives = 187/264 (70%), Gaps = 8/264 (3%)
Query: 2 LKCSICINDERVTRILIIDGKPICKECKAYLEHPPNKEKIREELEEILRKVDK------A 55
+KCSIC++ + +I+ +GKPIC +C L++PPN EK+++E+EEIL + K
Sbjct: 1 MKCSICVHTSKTKKIINYEGKPICVDCLTMLKYPPNFEKMKKEVEEILYNLKKEGGKYHC 60
Query: 56 IVAYSGGKDSTVALYLAKVKYGIDVEAVMVDHGFMASQAIENAKRIAEHLNVPLTIIKKD 115
I+A+SGGKDS +AL L K K+ ++ VMVD+ +MA +AIENA + +H V L I+ +D
Sbjct: 61 ILAFSGGKDSVLALKLLKEKFKLNPLCVMVDNKYMAKEAIENALNVTKHYQVDLMILNRD 120
Query: 116 YSDIFREALLKAKSPCRKCSKRTMEILRKYAIEHGYRYIITGHELPFGHHPYRIMSGGVL 175
Y+D+F +A+ + +SPCR+CS+ + + + G +YIITGHELPFGH R M G+
Sbjct: 121 YTDLFEDAIKRGESPCRRCSRLILREVWRVTKLLGLKYIITGHELPFGHSAIREMKEGIK 180
Query: 176 QIRMLS--MMSEEERLSILRELPFEFPELPGYTTNCLILGPALERYWEKHGYSFEHRRIA 233
IR+L+ EEE+ +L +LP++ P+L GYTTNCL+LG ALER+++K+G+SFE RIA
Sbjct: 181 MIRLLAPYKFKEEEKYKMLEDLPWKKPDLGGYTTNCLVLGVALERFYDKYGFSFEIDRIA 240
Query: 234 ALVRYGLMSKEKALRKVEKPKVPE 257
LVR GL+SKEKA +++EKPKVP+
Sbjct: 241 TLVRLGLLSKEKAKKELEKPKVPK 264
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105084646
Number of Sequences: 2977
Number of extensions: 4208565
Number of successful extensions: 13447
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13442
Number of HSP's gapped (non-prelim): 3
length of query: 274
length of database: 189,106,746
effective HSP length: 53
effective length of query: 221
effective length of database: 157,386,935
effective search space: 34782512635
effective search space used: 34782512635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)