BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1160 (PAB1160) DE:Hypothetical protein
(242 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 482 e-135
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ... 308 4e-83
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st... 123 2e-27
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ... 116 2e-25
pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii ... 84 1e-15
pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii ... 83 4e-15
pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (st... 80 3e-14
pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (st... 80 3e-14
pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (st... 79 4e-14
pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii ... 75 9e-13
pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (st... 73 4e-12
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 482 bits (1227), Expect = e-135
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MVNPISLAYRLIIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYL 60
MVNPISLAYRLIIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYL
Sbjct: 1 MVNPISLAYRLIIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYL 60
Query: 61 FIKVPYYSWIHIGGHILVMAGITYTYVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLP 120
FIKVPYYSWIHIGGHILVMAGITYTYVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLP
Sbjct: 61 FIKVPYYSWIHIGGHILVMAGITYTYVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLP 120
Query: 121 LMKGRNVLAITRDPDRFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGVII 180
LMKGRNVLAITRDPDRFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGVII
Sbjct: 121 LMKGRNVLAITRDPDRFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGVII 180
Query: 181 LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPIIT 240
LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPIIT
Sbjct: 181 LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPIIT 240
Query: 241 SS 242
SS
Sbjct: 241 SS 242
>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
>gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 308 bits (781), Expect = 4e-83
Identities = 140/238 (58%), Positives = 190/238 (79%)
Query: 1 MVNPISLAYRLIIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYL 60
MVN + L+YR I+F++F LS Y F+KL++SP EFKS+F + F FL + ++R ID+L
Sbjct: 1 MVNLMVLSYRFIVFLLFLILSIYAFVKLKRSPIEFKSVFTKSFTFLFLGVLIRGIDLLQA 60
Query: 61 FIKVPYYSWIHIGGHILVMAGITYTYVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLP 120
F+ +PYY IHI GHI+++ GI YTYVEF++NLERFFFP+EP F+ E A+LA S+EEVL
Sbjct: 61 FVYIPYYEEIHIIGHIIILGGIGYTYVEFMKNLERFFFPEEPIFKGEGAYLARSYEEVLS 120
Query: 121 LMKGRNVLAITRDPDRFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGVII 180
L+K + VL ITR+P ++ N ASR+IWVTSSGE GV PTSLHV+LDL IRF ENRGG+++
Sbjct: 121 LIKNKRVLVITRNPTKYRNLASRVIWVTSSGEKGVHPTSLHVILDLCIRFIKENRGGIVL 180
Query: 181 LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
+DC+EFL LYNGF SVFKFLT LKDN+ +RGG ++I+V P A+ +R++++L+REF P+
Sbjct: 181 IDCVEFLTLYNGFPSVFKFLTGLKDNVLMRGGKIIIMVNPNAIDKRDLSLLEREFTPL 238
>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
>gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 123 bits (306), Expect = 2e-27
Identities = 77/240 (32%), Positives = 129/240 (53%), Gaps = 17/240 (7%)
Query: 12 IIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYLFIKVPYYSWIH 71
I+F+ + + +++RK K + + L I ++ +++LY V S +
Sbjct: 7 IVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVSIVSSLA 66
Query: 72 IGGHILVMA-GITYT--------YVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLPLM 122
+ G ++++ G+ + V+ N E F ++ + +++ ++
Sbjct: 67 LFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV----DLINMI 122
Query: 123 KGRN--VLAITRDPD--RFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGV 178
K N VL TR P R L + R++W+T + E+G+PPT LHV+ D +IRFA EN+ V
Sbjct: 123 KELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKNAV 182
Query: 179 IILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
II+DCLE+L+LYN F+SVFKFL NLKD++ + L++ V KAL + NML EF P+
Sbjct: 183 IIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFEPL 242
>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
>gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 116 bits (288), Expect = 2e-25
Identities = 72/241 (29%), Positives = 130/241 (53%), Gaps = 26/241 (10%)
Query: 19 FLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYLFIKVPY-----YSWIHIG 73
+L ++ +++ K ++ K I +FL + AI++ +++ +K+ Y YS G
Sbjct: 2 YLLTFILIRINKYSDKAKKSAILVLLFLSLGAILKILEIADPSVKMDYIIQLVYSLTVFG 61
Query: 74 GHILVMAGITYTYVEFIQ---NLERFFFPKEPTFREEKAFLATSF---------EEVLPL 121
+ + Y++F++ +L K P + L ++ +++ +
Sbjct: 62 AFVALSF-----YIKFLETPPSLTVHHSTKLPKNGGSEPKLVGAYLVSGSRSRIVDLINM 116
Query: 122 MKGRN--VLAITRDPDRF--LNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGG 177
++ N +L TR P + L + ++IW+T + E+G+PPT LHV+ D +I+FA EN+
Sbjct: 117 IRELNAPILVFTRYPTFYQDLGENIKVIWITQASEDGIPPTKLHVIQDYAIKFAKENKYA 176
Query: 178 VIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRP 237
V+I+DC+E+L+LYN F SVFKFL +LKD + + LV+ V KAL E+ +L EF P
Sbjct: 177 VVIIDCVEYLLLYNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYTLLLNEFEP 236
Query: 238 I 238
+
Sbjct: 237 L 237
>pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii
>gi|3257939|dbj|BAA30622.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 84.3 bits (205), Expect = 1e-15
Identities = 66/223 (29%), Positives = 105/223 (46%), Gaps = 21/223 (9%)
Query: 11 LIIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYLFIKVPYYSWI 70
L + +IF LS F+ L K + K I G + L++A + + F + I
Sbjct: 100 LAVIIIFVALSLTGFMMLMKKEKNIK---ILGALTLILALVSALGEYKSFFRYLSAVIGI 156
Query: 71 HIGGHILVMAGITYTYVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLPLMKGRNVLAI 130
IG +++AGI+ + I+ E F F E +P + L
Sbjct: 157 SIG--YVIVAGISEVDLVKIKLSEEFEIKP-----------GIMFLESVPRDLLKVALVF 203
Query: 131 TRDPDRFLNKASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANENRGGVIILDCLEFLIL 189
+R P + W+T G+N + PT LH +LDL+++ +GG++I+DCLE+LIL
Sbjct: 204 SRRPPE--KNDGKWFWITKLEGKNNIGPTDLHKILDLAVKHIK--KGGIVIIDCLEYLIL 259
Query: 190 YNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLK 232
NGF V KFL L+D + ++I+ + L ERE ML+
Sbjct: 260 ENGFERVLKFLAQLRDYAIMYNSTVIILGSLDKLSERERAMLR 302
>pir||G71207 hypothetical protein PH1927 - Pyrococcus horikoshii
>gi|3258371|dbj|BAA31054.1| (AP000007) 355aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 355
Score = 82.7 bits (201), Expect = 4e-15
Identities = 63/228 (27%), Positives = 110/228 (47%), Gaps = 27/228 (11%)
Query: 37 SMFIRGFIFLLIAAIV-----RAIDVLY---------LFIKVPYYSWIHIGGHILVMAGI 82
S+ + G + L +++ ++I++L+ L + P IH +L +
Sbjct: 129 SLILGGSLIFLSVSLLEYVNRKSIEILFPIGVGSVGLLNLTYPVTRNIHTISDMLFLVAA 188
Query: 83 TYTYVEFIQNLERF-FFPKEP----TFREEKAFLATSFEEVLPLMKGRNVLAITRDPDRF 137
+ + I ++ F PK P + A+ + E+ L L+ N + ITR D
Sbjct: 189 IFRLIAAIGAIKMVTFVPKAPKNIKVISKPGAYWTENEEKGLNLISTMNPVIITRKRDLN 248
Query: 138 LNKASRIIWVTSS-----GEN--GVPPTSLHVLLDLSIRFANENRGGVIILDCLEFLILY 190
+ + + W+T GEN + PT++ +L DL R V I DC+E+LIL
Sbjct: 249 IKTPAIVYWITKVKEGEIGENIYAILPTNIGILTDLIYRAFKVGYNAVYI-DCIEYLILE 307
Query: 191 NGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
NG + KFL N KD + G +V+++ PKALGE+E+ ++++EF+ I
Sbjct: 308 NGTKATLKFLYNAKDIVLSNKGTIVLVINPKALGEQELKIIEKEFQKI 355
>pir||H75020 hypothetical protein PAB1116 - Pyrococcus abyssi (strain Orsay)
>gi|5459120|emb|CAB50606.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 353
Score = 80.0 bits (194), Expect = 3e-14
Identities = 47/137 (34%), Positives = 74/137 (53%), Gaps = 8/137 (5%)
Query: 109 AFLATSFEEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTSSGEN-------GVPPTSLH 161
A+ S + L L+ N + ITR +N + I W+T + E + PT +
Sbjct: 218 AYWTESKKGALELISQSNPVIITRRNPLDINFPAAIYWITKAKEGKIRENVYAISPTKID 277
Query: 162 VLLDLSIRFANENRGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPK 221
+L+DL I A E + +DCLE+L L NG N+ KFL +KD IT G++++ + PK
Sbjct: 278 ILIDL-INRAFEMGYKTLYIDCLEYLALENGTNATLKFLYTIKDIITKHNGVILLALNPK 336
Query: 222 ALGEREMNMLKREFRPI 238
ERE+ M+++EF+ I
Sbjct: 337 TFEEREVKMIEKEFKKI 353
>pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (strain Orsay)
>gi|5458347|emb|CAB49836.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 80.0 bits (194), Expect = 3e-14
Identities = 43/124 (34%), Positives = 70/124 (55%), Gaps = 3/124 (2%)
Query: 116 EEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANEN 174
+E+ L+ G+ LAITR P + IWV++ GE + PT L L+ + +EN
Sbjct: 127 QEIQKLLSGKKALAITRSPKIWKELGIPYIWVSNVEGEKSIEPTKLAPLMHYILSNLDEN 186
Query: 175 RGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKRE 234
+ILD L++L+LYNG KFL +LKDN+ + G L+++ P +L + ++RE
Sbjct: 187 T--FVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTIQRE 244
Query: 235 FRPI 238
F+ +
Sbjct: 245 FQEL 248
>pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (strain Orsay)
>gi|5458079|emb|CAB49568.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 319
Score = 79.2 bits (192), Expect = 4e-14
Identities = 57/184 (30%), Positives = 92/184 (49%), Gaps = 15/184 (8%)
Query: 57 VLYLFIKV-PYYSWIHIGGHILVMAGITYTYVEFIQ---NLERFFFPKEPTFREEKAFLA 112
VL + + V YYS + ++ V+ T Y ++ +L + T E K
Sbjct: 137 VLLVLVSVFGYYS--DLAKYLFVIIATTLGYFLIVETKIDLRKTILSPPSTGEELKLKPG 194
Query: 113 TSFEEVLPLMKGRNVLAITRDPDRFLNKASRIIWVT---SSGENGVPPTSLHVLLDLSIR 169
F E +P + L +R P K R WVT SS N + PT+L +L L++
Sbjct: 195 VIFAETIPEDILKVALVFSRKP----GKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVD 250
Query: 170 FANENRGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMN 229
+ + GV+++DCL++LIL NGF SV KF+ +L+D + G ++I+ + L ++E
Sbjct: 251 YLKKK--GVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKV 308
Query: 230 MLKR 233
MLKR
Sbjct: 309 MLKR 312
>pir||E71164 hypothetical protein PH0514 - Pyrococcus horikoshii
>gi|3256919|dbj|BAA29602.1| (AP000002) 352aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 352
Score = 74.9 bits (181), Expect = 9e-13
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 115 FEEVLPLMKGRNVLAITRDPDRFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANEN 174
F+ + P ++ VLA R S + S V P +L +++LS ++
Sbjct: 231 FKAISPSLQNFPVLAFVRHLKTPETWYSYFVTRARSDGGAVDPMNLPRIIELSRKYFQSV 290
Query: 175 RGGVIILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKRE 234
GV+++DCLE+L+LYNGF + K L L+D T+ G L++I + +A GE+E ++L R
Sbjct: 291 ERGVVVIDCLEYLVLYNGFENTAKHLAILRDYATVNNGTLILITSKEAWGEKEWSLLVRM 350
Query: 235 F 235
F
Sbjct: 351 F 351
>pir||H75194 hypothetical protein PAB0044 - Pyrococcus abyssi (strain Orsay)
>gi|5457516|emb|CAB49007.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 280
Score = 72.6 bits (175), Expect = 4e-12
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 128 LAITRDPDRFLN-----KASRIIWVTS-SGENGVPPTSLHVLLDLSIRFANENR-GGVII 180
+AITRDP + +IW++ E V PT L L F VI+
Sbjct: 149 IAITRDPPEVFRGKLNLHLTPVIWISKVKHEEAVSPTRLEFLTQRIADFLRSAEIDKVIL 208
Query: 181 LDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
+DCL++LIL NG N+V KF+T LKD + GI+++ + L E+ ++ LKRE PI
Sbjct: 209 IDCLDYLILENGENAVIKFVTRLKDLAMLHRGIILVTIDESVLSEKVVSFLKRELEPI 266
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.147 0.434
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86511971
Number of Sequences: 2977
Number of extensions: 3494938
Number of successful extensions: 9786
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9775
Number of HSP's gapped (non-prelim): 12
length of query: 242
length of database: 189,106,746
effective HSP length: 51
effective length of query: 191
effective length of database: 158,583,909
effective search space: 30289526619
effective search space used: 30289526619
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)