BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1162 (PAB1162) DE:Hypothetical protein
(139 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75030 hypothetical protein PAB1162 - Pyrococcus abyssi (st... 290 6e-78
pir||H71215 hypothetical protein PH1992 - Pyrococcus horikoshii ... 278 2e-74
dbj|BAB06867.1| (AP001517) unknown conserved protein [Bacillus h... 122 2e-27
pir||C69989 hypothetical protein ytcF - Bacillus subtilis >gi|22... 112 2e-24
sp|Q57763|Y315_METJA HYPOTHETICAL PROTEIN MJ0315 >gi|2128233|pir... 110 6e-24
pir||D72348 conserved hypothetical protein - Thermotoga maritima... 109 1e-23
pir||C83048 hypothetical protein PA4773 [imported] - Pseudomonas... 103 1e-21
pir||C70323 conserved hypothetical protein aq_254 - Aquifex aeol... 101 3e-21
dbj|BAB04816.1| (AP001510) unknown conserved protein in others [... 97 1e-19
gi|11499202 conserved hypothetical protein [Archaeoglobus fulgid... 91 5e-18
emb|CAC12321.1| (AL445066) conserved hypothetical protein [Therm... 87 9e-17
gb|AAK40898.1| Conserved hypothetical protein [Sulfolobus solfat... 80 1e-14
emb|CAB57715.1| (Y18930) hypothetical protein [Sulfolobus solfat... 80 1e-14
pir||B72761 hypothetical protein APE0079 - Aeropyrum pernix (str... 75 5e-13
emb|CAB57763.1| (Y18930) hypothetical protein [Sulfolobus solfat... 71 6e-12
gb|AAK40855.1| Conserved hypothetical protein [Sulfolobus solfat... 71 6e-12
pir||B72651 hypothetical protein APE0639 - Aeropyrum pernix (str... 70 1e-11
>pir||B75030 hypothetical protein PAB1162 - Pyrococcus abyssi (strain Orsay)
>gi|5459194|emb|CAB50680.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 139
Score = 290 bits (734), Expect = 6e-78
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV
Sbjct: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEEDDET 120
AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEEDDET
Sbjct: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEEDDET 120
Query: 121 FTHTILTWEEKLDRRNGKL 139
FTHTILTWEEKLDRRNGKL
Sbjct: 121 FTHTILTWEEKLDRRNGKL 139
>pir||H71215 hypothetical protein PH1992 - Pyrococcus horikoshii
>gi|3258436|dbj|BAA31119.1| (AP000007) 144aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 144
Score = 278 bits (703), Expect = 2e-74
Identities = 132/138 (95%), Positives = 135/138 (97%)
Query: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
MDTIGHHYIVEAAGCDP VIGDA+KIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV
Sbjct: 6 MDTIGHHYIVEAAGCDPNVIGDANKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 65
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEEDDET 120
AESHISVHTWPEKGYAALDVYTCGE ADPEKAVDYILEQFKAQYAHVSEIKRGIEE+D T
Sbjct: 66 AESHISVHTWPEKGYAALDVYTCGENADPEKAVDYILEQFKAQYAHVSEIKRGIEEEDRT 125
Query: 121 FTHTILTWEEKLDRRNGK 138
FTHTILTWEE+LDRRNGK
Sbjct: 126 FTHTILTWEERLDRRNGK 143
>dbj|BAB06867.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 127
Score = 122 bits (303), Expect = 2e-27
Identities = 54/114 (47%), Positives = 78/114 (68%)
Query: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
MDT+G H I E GCD + D I ++F++AA + EV+ F KF+P G+SGVVI+
Sbjct: 1 MDTMGRHVIAELWGCDVDKLNDLSFIEQVFVDAALKAGAEVREVAFHKFAPQGISGVVII 60
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGI 114
+ESH+++H++PE GYA++DVYTCG++ DP A +YI E KA V E+ RG+
Sbjct: 61 SESHLTIHSFPEHGYASIDVYTCGDRIDPNVASNYIAEALKATATEVVELPRGM 114
>pir||C69989 hypothetical protein ytcF - Bacillus subtilis
>gi|2293278|gb|AAC00356.1| (AF008220) YtcF [Bacillus
subtilis] >gi|2635366|emb|CAB14861.1| (Z99118) ytcF
[Bacillus subtilis]
Length = 128
Score = 112 bits (277), Expect = 2e-24
Identities = 55/114 (48%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
M+T+G H I E GCD + D D I + F+ AA + EV+ F KF+P GVSGVVI+
Sbjct: 3 METMGRHVISELWGCDFDKLNDMDFIEKTFVNAALKSGAEVREVAFHKFAPQGVSGVVII 62
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGI 114
+ESH+++H++PE GYA++DVYTCG+ DP A DYI E A EI RG+
Sbjct: 63 SESHLTIHSFPEHGYASIDVYTCGD-LDPNVAADYIAEALHADTRENIEIPRGM 115
>sp|Q57763|Y315_METJA HYPOTHETICAL PROTEIN MJ0315 >gi|2128233|pir||D64339 hypothetical
protein MJ0315 - Methanococcus jannaschii
>gi|1591035|gb|AAB98301.1| (U67486) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 135
Score = 110 bits (273), Expect = 6e-24
Identities = 50/114 (43%), Positives = 75/114 (64%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAES 63
+G H I+E GCDPK + D + I ++ +++ K + KFSP G +GV ++AES
Sbjct: 16 LGKHLILELWGCDPKALDDIEGIEKMLVDSVKACGATLICVRTHKFSPQGATGVAVLAES 75
Query: 64 HISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEED 117
HI++HT+PE GYAALDV+TCGE DP KA++ I E K + + ++KRG+ E+
Sbjct: 76 HIAIHTYPEYGYAALDVFTCGEHTDPYKALEVIREFLKPKSIQIIDLKRGLMEN 129
>pir||D72348 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981178|gb|AAD35739.1|AE001739_2 (AE001739)
conserved hypothetical protein [Thermotoga maritima]
Length = 130
Score = 109 bits (270), Expect = 1e-23
Identities = 48/113 (42%), Positives = 73/113 (64%)
Query: 1 MDTIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIV 60
M ++G H + E CD +V+ + I + +AA + S F +F P GVSGVV++
Sbjct: 1 MKSLGRHLVAEFYECDREVLDNVQLIEQEMKQAAYESGATIVTSTFHRFLPYGVSGVVVI 60
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRG 113
+ESH+++HTWPE GYAA+D++TCGE DP KA +++ + KA+ HV E +RG
Sbjct: 61 SESHLTIHTWPEYGYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVHVVEHERG 113
>pir||C83048 hypothetical protein PA4773 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951038|gb|AAG08159.1|AE004891_1
(AE004891) hypothetical protein [Pseudomonas aeruginosa]
Length = 160
Score = 103 bits (254), Expect = 1e-21
Identities = 47/111 (42%), Positives = 72/111 (64%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAES 63
+G ++E C + D I E LEAA++ N + S F KFSP+G+SGVV++AES
Sbjct: 14 LGKQLVIELFDCVDQRFDDIQWIEESMLEAARQANATIITSAFHKFSPIGISGVVVIAES 73
Query: 64 HISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGI 114
H+++HTWPE GYAA+DV+TCG+ D +AV + E+ ++ +S + RG+
Sbjct: 74 HLAIHTWPEYGYAAVDVFTCGDVLDGAQAVRVLSERLGSRRHLISSMDRGL 124
>pir||C70323 conserved hypothetical protein aq_254 - Aquifex aeolicus
>gi|2982962|gb|AAC06577.1| (AE000680) hypothetical
protein [Aquifex aeolicus]
Length = 135
Score = 101 bits (250), Expect = 3e-21
Identities = 47/116 (40%), Positives = 72/116 (61%)
Query: 3 TIGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAE 62
T+G H + + G D I + IRE+ A K N+ +S++++F P G +GVV++AE
Sbjct: 4 TLGLHILADLYGVDADKIDRVEDIRELLEGAVKYANLTKISSHYYQFQPHGATGVVLLAE 63
Query: 63 SHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEEDD 118
SHIS+HTWPE G A +DVYTCG+ + +A+DYI+ Q + +RGI E++
Sbjct: 64 SHISIHTWPEHGLATVDVYTCGDPSKAYRAMDYIITQLNPKRIDKQVHERGIVEEE 119
>dbj|BAB04816.1| (AP001510) unknown conserved protein in others [Bacillus
halodurans]
Length = 105
Score = 96.7 bits (237), Expect = 1e-19
Identities = 45/105 (42%), Positives = 63/105 (59%)
Query: 9 IVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAESHISVH 68
++E CD ++ D +I+ I EAA + + +F F P GVSGVVI+ ESH+++H
Sbjct: 1 MLELHDCDATLLNDMQQIKTIMCEAACKAKAMIVTEHFHYFLPFGVSGVVIIQESHLTIH 60
Query: 69 TWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRG 113
TWPE GYAA+DV+TC K + AV YI +QF A + RG
Sbjct: 61 TWPEHGYAAIDVFTCNSKLALQAAVQYITQQFNAGNVTQHYLHRG 105
>gi|11499202 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450306|pir||A69451 conserved hypothetical protein
AF1610 - Archaeoglobus fulgidus
>gi|2648951|gb|AAB89640.1| (AE000991) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 112
Score = 91.3 bits (223), Expect = 5e-18
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAES 63
+G H I E G ++I + +R I E + + S + +F+P GV+G+V++AES
Sbjct: 3 VGRHIIAELYGVKEELIAKEEVVRSIVEEVVDKAELTKVGSVYKQFNPHGVTGIVLIAES 62
Query: 64 HISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQ-YAH 106
H+S+HTWPE G LD++TCG+ + EKA LE+FK + Y H
Sbjct: 63 HVSIHTWPEYGLVNLDIFTCGDTSKVEKAFKLFLEKFKPESYRH 106
>emb|CAC12321.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 131
Score = 87.0 bits (212), Expect = 9e-17
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAES 63
+G H I + G D ++I +++ I A + G + +S +++F P G SG+V++AES
Sbjct: 5 VGIHIIADFYGVDSELIATTERMYPIIEGAVEYGRLTKISSDYYQFRPKGASGIVLLAES 64
Query: 64 HISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRG--IEEDDE 119
H+S HTWPE G LD+YTCG+ + A Y++++ + +I RG IEE E
Sbjct: 65 HLSFHTWPEYGLVTLDIYTCGDPKTADDAFAYLVDKLRPTSISTRKIVRGDMIEEAGE 122
>gb|AAK40898.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 124
Score = 80.0 bits (194), Expect = 1e-14
Identities = 41/101 (40%), Positives = 58/101 (56%), Gaps = 1/101 (0%)
Query: 15 CDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAESHISVHTWPEKG 74
CD V+ D ++ +I EAA GNM + +K GVS V I+ ESHI++HTWPE
Sbjct: 24 CDEDVLKDTKRLEQIIKEAADIGNMNILDIKSWKIGE-GVSVVAIILESHITIHTWPEYR 82
Query: 75 YAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIE 115
+A +DVY+CG P A YI+E+ A+ ++E R E
Sbjct: 83 FATVDVYSCGPHTSPLNAFRYIVEKLGAKRYTINEADRSSE 123
>emb|CAB57715.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 124
Score = 80.0 bits (194), Expect = 1e-14
Identities = 41/101 (40%), Positives = 58/101 (56%), Gaps = 1/101 (0%)
Query: 15 CDPKVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAESHISVHTWPEKG 74
CD V+ D ++ +I EAA GNM + +K GVS V I+ ESHI++HTWPE
Sbjct: 24 CDEDVLKDTKRLEQIIKEAADIGNMNILDIKSWKIGE-GVSVVAIILESHITIHTWPEYR 82
Query: 75 YAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIE 115
+A +DVY+CG P A YI+E+ A+ ++E R E
Sbjct: 83 FATVDVYSCGPHTSPLNAFRYIVEKLGAKRYTINEADRSSE 123
>pir||B72761 hypothetical protein APE0079 - Aeropyrum pernix (strain K1)
>gi|5103467|dbj|BAA78988.1| (AP000058) 132aa long
hypothetical protein [Aeropyrum pernix]
Length = 132
Score = 74.5 bits (180), Expect = 5e-13
Identities = 40/115 (34%), Positives = 60/115 (51%), Gaps = 2/115 (1%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNMEVKA--SYFFKFSPMGVSGVVIVA 61
+G H G + D + +R + + AA+ V A S+ GVS +V+V
Sbjct: 9 VGKHVYGSLYGVPREKATDEEYLRGVVVRAAESAGATVHAVNSWTIPGEKGGVSVIVLVL 68
Query: 62 ESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEE 116
ESH+++HTWPE YA D+YTCGE DP KA + +L + K + V + R E+
Sbjct: 69 ESHLALHTWPEYDYATFDIYTCGEHTDPWKAFELLLSELKPRKYTVHYVDRSQEK 123
>emb|CAB57763.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 134
Score = 71.0 bits (171), Expect = 6e-12
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNM---EVKASYFFKFSPMGVSGVVIV 60
IG H D + + D + + ++ LEA +M E+KA + F GVS + +V
Sbjct: 21 IGKHVFGNLYDIDAERLNDKEFLEKLVLEAVDIAHMKLVEIKA-WSFGGKKGGVSVIALV 79
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYIL 97
ESHI++HTW E YA LDVYTCGE +DP+ A +I+
Sbjct: 80 EESHIALHTWNEYNYATLDVYTCGEDSDPQSAFAHIV 116
>gb|AAK40855.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 134
Score = 71.0 bits (171), Expect = 6e-12
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 4 IGHHYIVEAAGCDPKVIGDADKIREIFLEAAKRGNM---EVKASYFFKFSPMGVSGVVIV 60
IG H D + + D + + ++ LEA +M E+KA + F GVS + +V
Sbjct: 21 IGKHVFGNLYDIDAERLNDKEFLEKLVLEAVDIAHMKLVEIKA-WSFGGKKGGVSVIALV 79
Query: 61 AESHISVHTWPEKGYAALDVYTCGEKADPEKAVDYIL 97
ESHI++HTW E YA LDVYTCGE +DP+ A +I+
Sbjct: 80 EESHIALHTWNEYNYATLDVYTCGEDSDPQSAFAHIV 116
>pir||B72651 hypothetical protein APE0639 - Aeropyrum pernix (strain K1)
>gi|5104295|dbj|BAA79610.1| (AP000060) 134aa long
hypothetical protein [Aeropyrum pernix]
Length = 134
Score = 70.2 bits (169), Expect = 1e-11
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 18 KVIGDADKIREIFLEAAKRGNMEVKASYFFKFSPMGVSGVVIVAESHISVHTWPEKGYAA 77
+++ +++ ++ LEAA+ G M V +K GVS V I+ ESHI+VHTWPE +A
Sbjct: 38 ELLKSPEELEKVVLEAAREGGMTVLDIKSWKIGE-GVSVVAIILESHITVHTWPEYRFAT 96
Query: 78 LDVYTCGEKADPEKAVDYILEQFKAQYAHVSEIKRGIEE 116
+DVY+CG +P +A + + E K + +++G+ E
Sbjct: 97 VDVYSCGGHTNPHRAFEVLAEALKP-----ARVEKGVAE 130
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53054368
Number of Sequences: 2977
Number of extensions: 1999773
Number of successful extensions: 4697
Number of sequences better than 1.0e-10: 17
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4681
Number of HSP's gapped (non-prelim): 17
length of query: 139
length of database: 189,106,746
effective HSP length: 52
effective length of query: 87
effective length of database: 157,985,422
effective search space: 13744731714
effective search space used: 13744731714
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)