BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1163 (PAB1163) DE:Hypothetical protein
(235 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75030 hypothetical protein PAB1163 - Pyrococcus abyssi (st... 480 e-135
pir||A71216 hypothetical protein PH1993 - Pyrococcus horikoshii ... 311 4e-84
sp|Q57928|Y505_METJA HYPOTHETICAL PROTEIN MJ0505 163 1e-39
pir||A64363 hypothetical protein MJ0505 - Methanococcus jannasch... 163 1e-39
>pir||C75030 hypothetical protein PAB1163 - Pyrococcus abyssi (strain Orsay)
>gi|5459195|emb|CAB50681.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 235
Score = 480 bits (1223), Expect = e-135
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MTGGTVSSKLFLLILVLAIILIPWGTPKLIILVHDVSPVYYPYIENITALIEEYGFQNST 60
MTGGTVSSKLFLLILVLAIILIPWGTPKLIILVHDVSPVYYPYIENITALIEEYGFQNST
Sbjct: 1 MTGGTVSSKLFLLILVLAIILIPWGTPKLIILVHDVSPVYYPYIENITALIEEYGFQNST 60
Query: 61 ILLIIPNHAGKHPISKDERFVQLIKKLEEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAA 120
ILLIIPNHAGKHPISKDERFVQLIKKLEEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAA
Sbjct: 61 ILLIIPNHAGKHPISKDERFVQLIKKLEEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAA 120
Query: 121 REELERAGIKYDKVFVPPRYEISTQALKVLLRNNFTVFLKGKVCYPSGDCERIKEREYTW 180
REELERAGIKYDKVFVPPRYEISTQALKVLLRNNFTVFLKGKVCYPSGDCERIKEREYTW
Sbjct: 121 REELERAGIKYDKVFVPPRYEISTQALKVLLRNNFTVFLKGKVCYPSGDCERIKEREYTW 180
Query: 181 YAGRLRAKIMLVIAKFEFTHTRGIFVLSIHPKAVNYGGGMDFLREFLKYAKEKEK 235
YAGRLRAKIMLVIAKFEFTHTRGIFVLSIHPKAVNYGGGMDFLREFLKYAKEKEK
Sbjct: 181 YAGRLRAKIMLVIAKFEFTHTRGIFVLSIHPKAVNYGGGMDFLREFLKYAKEKEK 235
>pir||A71216 hypothetical protein PH1993 - Pyrococcus horikoshii
>gi|3258437|dbj|BAA31120.1| (AP000007) 238aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 238
Score = 311 bits (789), Expect = 4e-84
Identities = 140/219 (63%), Positives = 176/219 (79%)
Query: 14 ILVLAIILIPWGTPKLIILVHDVSPVYYPYIENITALIEEYGFQNSTILLIIPNHAGKHP 73
+ + ++L+P G P+ IIL+HDVSPVY YI+NIT +I Y FQNSTILL+IPNHA +HP
Sbjct: 18 VFFMILLLLPQGNPQFIILIHDVSPVYSNYIQNITEIISTYNFQNSTILLVIPNHANEHP 77
Query: 74 ISKDERFVQLIKKLEEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAAREELERAGIKYDK 133
IS D +F LI++LE+EGYKVGIHGY+HIG EF C+ A+ KL A EEL + I +++
Sbjct: 78 ISGDPKFQALIRELEKEGYKVGIHGYNHIGEEFNCDSETAKIKLSLAIEELNASNITFER 137
Query: 134 VFVPPRYEISTQALKVLLRNNFTVFLKGKVCYPSGDCERIKEREYTWYAGRLRAKIMLVI 193
+F+PPRY+IS L VLL NNFTVFLK ++CYPSG C RIKEREYTWY G++RAKI+L +
Sbjct: 138 IFLPPRYKISKDPLNVLLENNFTVFLKDRICYPSGTCIRIKEREYTWYTGKIRAKILLQV 197
Query: 194 AKFEFTHTRGIFVLSIHPKAVNYGGGMDFLREFLKYAKE 232
AKFE+THT+G+FVLS+HPKAVNYGGGM FL EFLKY +E
Sbjct: 198 AKFEYTHTKGVFVLSVHPKAVNYGGGMYFLEEFLKYVRE 236
>sp|Q57928|Y505_METJA HYPOTHETICAL PROTEIN MJ0505
Length = 250
Score = 163 bits (409), Expect = 1e-39
Identities = 91/209 (43%), Positives = 123/209 (58%), Gaps = 10/209 (4%)
Query: 28 KLIILVHDVSPVYYPYIENITALIEEYGFQNSTILLIIPNHAGKHPISKDERFVQLIKKL 87
K IIL+HDVSPVY+ ++ I +I++Y +QN + L +I NHA K+ + FV + KL
Sbjct: 37 KPIILIHDVSPVYFKELKEIVKIIDKYHYQNRSYLFLIVNHANKYNLKNYPEFVDYLHKL 96
Query: 88 EEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAAREELERAGI--KYDKVFVPPRYEISTQ 145
E+EGY + H Y+HI +EF CN+T+AE KL + + LE G K K F+PPRY++S
Sbjct: 97 EKEGYHIEFHAYNHIDDEFNCNKTVAEEKLNKSFKILEECGFNPKKIKYFIPPRYKLSED 156
Query: 146 ALKVLLRNNFTVFLKGK-VCYPSGDCERIK--EREYTWYAGRLRAKIMLVIA----KFEF 198
A K+ L N T+ L+ K + G I REYTWY + K+ IA K
Sbjct: 157 AEKLFLGRNITIILENKMITEKDGKIVEISITNREYTWYLPKPLVKVAEKIATTDYKLSI 216
Query: 199 THTRGIFVLSIHPKAVNYGGGMDFLREFL 227
R F LSIHPKAVNYG G++FL FL
Sbjct: 217 KENRKFF-LSIHPKAVNYGSGLEFLDYFL 244
>pir||A64363 hypothetical protein MJ0505 - Methanococcus jannaschii
>gi|1591208|gb|AAB98501.1| (U67500) M. jannaschii
predicted coding region MJ0505 [Methanococcus
jannaschii]
Length = 251
Score = 163 bits (409), Expect = 1e-39
Identities = 91/209 (43%), Positives = 123/209 (58%), Gaps = 10/209 (4%)
Query: 28 KLIILVHDVSPVYYPYIENITALIEEYGFQNSTILLIIPNHAGKHPISKDERFVQLIKKL 87
K IIL+HDVSPVY+ ++ I +I++Y +QN + L +I NHA K+ + FV + KL
Sbjct: 38 KPIILIHDVSPVYFKELKEIVKIIDKYHYQNRSYLFLIVNHANKYNLKNYPEFVDYLHKL 97
Query: 88 EEEGYKVGIHGYDHIGNEFLCNETIAEAKLRAAREELERAGI--KYDKVFVPPRYEISTQ 145
E+EGY + H Y+HI +EF CN+T+AE KL + + LE G K K F+PPRY++S
Sbjct: 98 EKEGYHIEFHAYNHIDDEFNCNKTVAEEKLNKSFKILEECGFNPKKIKYFIPPRYKLSED 157
Query: 146 ALKVLLRNNFTVFLKGK-VCYPSGDCERIK--EREYTWYAGRLRAKIMLVIA----KFEF 198
A K+ L N T+ L+ K + G I REYTWY + K+ IA K
Sbjct: 158 AEKLFLGRNITIILENKMITEKDGKIVEISITNREYTWYLPKPLVKVAEKIATTDYKLSI 217
Query: 199 THTRGIFVLSIHPKAVNYGGGMDFLREFL 227
R F LSIHPKAVNYG G++FL FL
Sbjct: 218 KENRKFF-LSIHPKAVNYGSGLEFLDYFL 245
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89802379
Number of Sequences: 2977
Number of extensions: 3617916
Number of successful extensions: 9167
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9157
Number of HSP's gapped (non-prelim): 4
length of query: 235
length of database: 189,106,746
effective HSP length: 52
effective length of query: 183
effective length of database: 157,985,422
effective search space: 28911332226
effective search space used: 28911332226
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)