BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1166 (rpl1P) DE:LSU ribosomal protein L1P (rpl1P)
(219 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UWR8|RL1_PYRAB 50S RIBOSOMAL PROTEIN L1P >gi|7440586|pir||C... 428 e-119
sp|O57782|RL1_PYRHO 50S RIBOSOMAL PROTEIN L1P >gi|7440581|pir||D... 409 e-113
sp|O27716|RL1_METTH 50S RIBOSOMAL PROTEIN L1P >gi|7440582|pir||F... 249 3e-65
sp|P54050|RL1_METJA 50S RIBOSOMAL PROTEIN L1P >gi|2119101|pir||F... 247 1e-64
pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 Fr... 243 1e-63
sp|O52704|RL1_METTL 50S RIBOSOMAL PROTEIN L1P >gi|2895647|gb|AAC... 238 5e-62
sp|Q9Y8J2|RL1_METVO 50S RIBOSOMAL PROTEIN L1P >gi|4894938|gb|AAD... 210 8e-54
sp|P15824|RL1_METVA 50S RIBOSOMAL PROTEIN L1P (RIBOSOMAL PROTEIN... 208 4e-53
gi|11499085 LSU ribosomal protein L1P (rpl1P) [Archaeoglobus ful... 202 2e-51
pir||R5MX1 ribosomal protein L1 - Methanococcus vannielii 200 1e-50
emb|CAC11504.1| (AL445064) probable 50S ribosomal protein L1 [Th... 192 3e-48
sp|P12738|RL1_HALMA 50S RIBOSOMAL PROTEIN L1P (HMAL1) (HL8) >gi|... 171 4e-42
sp|P13575|RL1_HALHA 50S RIBOSOMAL PROTEIN L1P (HL8) >gi|71063|pi... 166 2e-40
sp|P05966|RL1_HALCU 50S RIBOSOMAL PROTEIN L1P (HL8) >gi|71062|pi... 165 4e-40
sp|P41199|RL1_HALVO 50S RIBOSOMAL PROTEIN L1P >gi|421724|pir||S3... 165 4e-40
sp|Q9Y9W6|RL1_AERPE 50S RIBOSOMAL PROTEIN L1P >gi|7440587|pir||H... 158 6e-38
sp|P35024|RL1_SULAC 50S RIBOSOMAL PROTEIN L1P >gi|2119102|pir||S... 131 7e-30
dbj|BAB08343.1| (AB007651) 60S ribosomal protein L10A [Arabidops... 115 4e-25
gb|AAK40674.1| LSU ribosomal protein L1AB (rpl1AB) [Sulfolobus s... 113 1e-24
sp|P96038|RL1_SULSO 50S RIBOSOMAL PROTEIN L1P >gi|1814428|gb|AAB... 113 1e-24
gb|AAC73045.1| (AC005824) 60S ribosomal protein L10A [Arabidopsi... 111 9e-24
sp|O14363|R10A_SCHPO 60S RIBOSOMAL PROTEIN L1-A (L10A) >gi|74900... 108 6e-23
sp|O74836|R10B_SCHPO 60S RIBOSOMAL PROTEIN L1-B (L10A) >gi|74900... 106 2e-22
gb|AAF50002.1| (AE003543) CG7283 gene product [Drosophila melano... 101 6e-21
gb|AAG09267.1| (AF176664) L1 [EDTA-degrading bacterium BNC1] 101 1e-20
emb|CAB56219.1| (AJ011417) L10A ribosomal protein [Candida albic... 99 4e-20
sp|P44342|RL1_HAEIN 50S RIBOSOMAL PROTEIN L1 >gi|1075228|pir||I6... 98 6e-20
gi|11418527 ribosomal protein L10a [Homo sapiens] >gi|1709974|sp... 98 1e-19
sp|P29393|RL1_THEMA 50S RIBOSOMAL PROTEIN L1 >gi|71061|pir||R5HG... 97 2e-19
gi|6321303 Ribosomal protein L1B; Rpl1bp [Saccharomyces cerevisi... 97 2e-19
gb|AAF36008.1| (AC024200) contains similarity to Pfam family PF0... 96 2e-19
sp|O32614|RL1_HAEDU 50S RIBOSOMAL PROTEIN L1 >gi|2267574|gb|AAB6... 96 2e-19
sp|P02384|RL1_ECOLI 50S RIBOSOMAL PROTEIN L1 >gi|71057|pir||R5EC... 96 3e-19
gi|6325472 ribosomal protein L10a; neural precursor cell express... 96 3e-19
gi|6755350 ribospsmal protein L10A [Mus musculus] >gi|1709972|sp... 96 4e-19
sp|P53028|R10A_TRYBR 60S RIBOSOMAL PROTEIN L10A >gi|1123023|gb|A... 96 4e-19
pir||C82338 ribosomal protein L1 VC0325 [imported] - Vibrio chol... 96 4e-19
sp|P09764|RL1_SERMA 50S RIBOSOMAL PROTEIN L1 >gi|71058|pir||R5SE... 95 5e-19
gb|AAF33496.1| (AF170176) 98% identity over 233 amino acids to E... 95 5e-19
gb|AAB30332.1| ribosomal protein L1, ribosomal protein TL2 [Ther... 92 4e-18
sp|P27150|RL1_THETH 50S RIBOSOMAL PROTEIN L1 >gi|2120598|pir||S6... 92 4e-18
sp|P10054|RL1_PROVU 50S RIBOSOMAL PROTEIN L1 >gi|71059|pir||R5EB... 92 5e-18
sp|Q9X521|RL1_STRAU 50S RIBOSOMAL PROTEIN L1 >gi|4580993|gb|AAD2... 92 6e-18
pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Replaced... 91 8e-18
sp|O67759|RL1_AQUAE 50S RIBOSOMAL PROTEIN L1 >gi|7440575|pir||C7... 91 8e-18
pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-El... 91 8e-18
gb|AAD09993.1| (AF070993) ribosomal protein L10a [Trichomonas va... 90 1e-17
sp|Q07976|RL1_STRSQ 50S RIBOSOMAL PROTEIN L1 >gi|541504|pir||S40... 90 2e-17
gb|AAD50305.1|AF175385_1 (AF175385) 60S ribosomal protein L10a [... 90 2e-17
pir||F75323 ribosomal protein L1 - Deinococcus radiodurans (stra... 89 3e-17
dbj|BAB03839.1| (AP001507) ribosomal protein L1 (BL1) [Bacillus ... 89 5e-17
sp|P48951|RL1_STRVG 50S RIBOSOMAL PROTEIN L1 >gi|7440588|pir||T1... 88 7e-17
gb|AAF22886.1|AC006932_3 (AC006932) T27G7.6 [Arabidopsis thaliana] 87 1e-16
pir||B83111 50S ribosomal protein L1 PA4273 [imported] - Pseudom... 87 2e-16
gi|11467612 ribosomal protein L1 [Guillardia theta] >gi|6093980|... 86 3e-16
pir||R5BS1 ribosomal protein L1 - Bacillus stearothermophilus 86 4e-16
sp|P36248|RL1_CGDAB 50S RIBOSOMAL PROTEIN L1 >gi|144457|gb|AAA23... 86 4e-16
sp|P04447|RL1_BACST 50S RIBOSOMAL PROTEIN L1 86 4e-16
pir||E81235 50S ribosomal protein L1 NMB0128 [imported] - Neisse... 85 5e-16
gi|11467548 50S ribosomal protein L1 [Odontella sinensis] >gi|13... 85 8e-16
emb|CAB77423.1| (AL160431) 50S ribosomal protein L1 [Streptomyce... 84 1e-15
emb|CAA54255.1| (X76932) ribosomal protein L1 [Spinacia oleracea] 84 1e-15
emb|CAA62364.1| (X90855) L1 protein [Arabidopsis thaliana] 83 2e-15
pir||T49190 ribosomal protein L1-like protein - Arabidopsis thal... 83 2e-15
pir||F81392 50S ribosomal protein L1 Cj0475 [imported] - Campylo... 82 4e-15
sp|P57149|RL1_BUCAI 50S RIBOSOMAL PROTEIN L1 >gi|10038729|dbj|BA... 82 5e-15
pir||G82876 ribosomal protein L1 UU540 [imported] - Ureaplasma u... 81 9e-15
sp|Q9Z9A3|RL1_CHLPN 50S RIBOSOMAL PROTEIN L1 >gi|7440579|pir||A7... 80 2e-14
gb|AAF55120.1| (AE003707) CG3843 gene product [Drosophila melano... 80 2e-14
sp|Q06797|RL1_BACSU 50S RIBOSOMAL PROTEIN L1 (BL1) >gi|7440573|p... 79 4e-14
gi|11465804 50S ribosomal protein L1 [Porphyra purpurea] >gi|171... 79 4e-14
sp|P56029|RL1_HELPY 50S RIBOSOMAL PROTEIN L1 >gi|7440572|pir||A6... 79 4e-14
emb|CAB65902.1| (AJ270980) 60s ribosomal protein L10A [Caenorhab... 79 5e-14
pir||E82531 50S ribosomal protein L1 XF2636 [imported] - Xylella... 79 5e-14
gi|11465492 unknown; 50S ribosomal protein L1 [Cyanidium caldari... 78 6e-14
gb|AAF36508.1|AF130462_5 (AF130462) 50S ribosomal protein L1 [Co... 78 6e-14
sp|P36256|RL1_STRGR 50S RIBOSOMAL PROTEIN L1 >gi|322287|pir||S32... 77 1e-13
sp|P36236|RL1_SYNY3 50S RIBOSOMAL PROTEIN L1 >gi|1075627|pir||D4... 77 2e-13
gi|11467315 ribosomal protein L1 [Cyanophora paradoxa] >gi|13506... 76 2e-13
pir||B81685 ribosomal protein L1 TC0592 [imported] - Chlamydia m... 76 2e-13
sp|O84320|RL1_CHLTR 50S RIBOSOMAL PROTEIN L1 >gi|7440576|pir||C7... 75 5e-13
sp|Q9ZK21|RL1_HELPJ 50S RIBOSOMAL PROTEIN L1 >gi|7440571|pir||E7... 75 7e-13
sp|P96932|RL1_MYCTU 50S RIBOSOMAL PROTEIN L1 >gi|7440577|pir||F7... 74 1e-12
sp|O51353|RL1_BORBU 50S RIBOSOMAL PROTEIN L1 >gi|7440585|pir||G7... 71 1e-11
gb|AAB47277.1| (U86609) ribosomal protein L1 homolog [Helicobact... 69 3e-11
>sp|Q9UWR8|RL1_PYRAB 50S RIBOSOMAL PROTEIN L1P >gi|7440586|pir||C75031 lsu ribosomal
protein l1p (rpl1p) PAB1166 - Pyrococcus abyssi (strain
Orsay) >gi|5459203|emb|CAB50689.1| (AJ248288) LSU
ribosomal protein L1P (rpl1P) [Pyrococcus abyssi]
Length = 219
Score = 428 bits (1088), Expect = e-119
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MSRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG 60
MSRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG
Sbjct: 1 MSRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG 60
Query: 61 KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKI 120
KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKI
Sbjct: 61 KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKI 120
Query: 121 GRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
GRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI
Sbjct: 121 GRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
Query: 181 AENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVKG 219
AENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVKG
Sbjct: 181 AENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVKG 219
>sp|O57782|RL1_PYRHO 50S RIBOSOMAL PROTEIN L1P >gi|7440581|pir||D71217 probable
ribosomal protein L1 - Pyrococcus horikoshii
>gi|3130282|dbj|BAA31941.1| (AP000001) 219aa long
hypothetical 50S ribosomal protein L1 [Pyrococcus
horikoshii] >gi|4432882|dbj|BAA31942.1| (AP000007) 219aa
long hypothetical 50S ribosomal protein L1 [Pyrococcus
horikoshii]
Length = 219
Score = 409 bits (1040), Expect = e-113
Identities = 206/219 (94%), Positives = 217/219 (99%)
Query: 1 MSRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG 60
MSRM FDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG
Sbjct: 1 MSRMAFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG 60
Query: 61 KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKI 120
KDVKIAVIADGAVAEAARRLGLDVISSAELEEIA+SPRQARKLAKKYDFFIAEAPLMPKI
Sbjct: 61 KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAKSPRQARKLAKKYDFFIAEAPLMPKI 120
Query: 121 GRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
GRYLG+YLGPRNKMPVVVPPTM+N+EPIVEKLKKTVRIQLK+NPVVHAPVGTEKMSDE++
Sbjct: 121 GRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQLKDNPVVHAPVGTEKMSDEQL 180
Query: 181 AENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVKG 219
AENIE VLNAIIGKLERGE+QI+SVYVKTTMGPAV+V+G
Sbjct: 181 AENIEAVLNAIIGKLERGENQIRSVYVKTTMGPAVRVEG 219
>sp|O27716|RL1_METTH 50S RIBOSOMAL PROTEIN L1P >gi|7440582|pir||F69091 ribosomal protein
L1 - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2622810|gb|AAB86152.1| (AE000926) ribosomal
protein L10a (E.coli L1) [Methanobacterium
thermoautotrophicum]
Length = 224
Score = 249 bits (628), Expect = 3e-65
Identities = 122/211 (57%), Positives = 168/211 (78%), Gaps = 2/211 (0%)
Query: 8 RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAV 67
+Q+I+EAVK+AK ++PRNFTQS++V +N+KD+D+ +PENRF EV LP+GRGKDVKIAV
Sbjct: 14 QQEIMEAVKKAKELSRPRNFTQSMDVILNIKDLDVNKPENRFDEEVSLPNGRGKDVKIAV 73
Query: 68 IADGAVAEAARRLGLD-VISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
IADG +A A+ G D VI+ ELEE+ ++ ++A+KLA +Y+FF+A+A +MP +GR++G
Sbjct: 74 IADGELALQAKNAGADLVITKDELEELGKNRKEAKKLANQYEFFVAQADMMPLVGRFMGP 133
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
LGPR KMP VP T+ N EPI+ KL+ TV++++K+ PVVH VGTE M DE++AENIE
Sbjct: 134 VLGPRKKMPKPVPATI-NPEPILNKLRDTVKVRIKDQPVVHTVVGTEDMDDEKLAENIEA 192
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
VL I KLE+G +Q+KS+YVKTTMGP V+V
Sbjct: 193 VLQTIDRKLEKGRNQLKSMYVKTTMGPVVRV 223
>sp|P54050|RL1_METJA 50S RIBOSOMAL PROTEIN L1P >gi|2119101|pir||F64363 ribosomal protein
L1 - Methanococcus jannaschii >gi|1591212|gb|AAB98500.1|
(U67500) LSU ribosomal protein L1P (rplA) [Methanococcus
jannaschii]
Length = 232
Score = 247 bits (623), Expect = 1e-64
Identities = 124/216 (57%), Positives = 157/216 (72%), Gaps = 1/216 (0%)
Query: 3 RMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKD 62
RM DR+ +++AVKEA+ AKPRNFTQS E LK+ID+++PENR K EVVLPHGRGK+
Sbjct: 11 RMTMDREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKE 70
Query: 63 VKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
KIAVI G +A+ A LGL VI E+EE+ ++ R+ RK+AK +DFFIA+A LMP IGR
Sbjct: 71 AKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGR 130
Query: 123 YLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAE 182
Y+G LGPR KMP VP +N++P+VE+LKKTV I ++ P VG EKM+DE+I +
Sbjct: 131 YMGVILGPRGKMPKPVPAN-ANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVD 189
Query: 183 NIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVK 218
NIE VLN + K E+G IK YVK TMGPAVKVK
Sbjct: 190 NIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVK 225
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
Length = 219
Score = 243 bits (614), Expect = 1e-63
Identities = 122/212 (57%), Positives = 155/212 (72%), Gaps = 1/212 (0%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
DR+ +++AVKEA+ AKPRNFTQS E LK+ID+++PENR K EVVLPHGRGK+ KIA
Sbjct: 2 DREALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIA 61
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
VI G +A+ A LGL VI E+EE+ ++ R+ RK+AK +DFFIA+A LMP IGRY+G
Sbjct: 62 VIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGV 121
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
LGPR KMP VP +N++P+VE+LKKTV I ++ P VG EKM+DE+I +NIE
Sbjct: 122 ILGPRGKMPKPVPAN-ANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEA 180
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKVK 218
VLN + K E+G IK YVK TMGPAVKVK
Sbjct: 181 VLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVK 212
>sp|O52704|RL1_METTL 50S RIBOSOMAL PROTEIN L1P >gi|2895647|gb|AAC64510.1| (AF044919)
ribosomal protein L1 [Methanococcus
thermolithotrophicus]
Length = 213
Score = 238 bits (600), Expect = 5e-62
Identities = 116/212 (54%), Positives = 158/212 (73%), Gaps = 1/212 (0%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
DR+ I++AVKEA++ AKPRNFTQS+++ +NLK++DL RPENR K +VVLP+GRGK+ KIA
Sbjct: 2 DRENILKAVKEARSLAKPRNFTQSLDLIINLKELDLSRPENRLKEQVVLPNGRGKEPKIA 61
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
VIA G +A A +GL VI ELEE+ ++ + A+K+A ++DFFIA+A +MP +G+ LG
Sbjct: 62 VIAKGDLAAQAEEMGLTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGP 121
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
LGPR KMP VP +NL P+VE+LKKTV I ++ P+ H VG EKMSDEE+AENIE
Sbjct: 122 VLGPRGKMPQPVPAN-ANLTPLVERLKKTVLINTRDKPLFHVLVGNEKMSDEELAENIEA 180
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKVK 218
+LN + K E+G +KS Y K TMGP +++
Sbjct: 181 ILNTVSRKYEKGLYHVKSAYTKLTMGPPAQIE 212
>sp|Q9Y8J2|RL1_METVO 50S RIBOSOMAL PROTEIN L1P >gi|4894938|gb|AAD32664.1|AF139164_1
(AF139164) ribosomal protein L1 [Methanococcus voltae]
Length = 213
Score = 210 bits (530), Expect = 8e-54
Identities = 106/212 (50%), Positives = 144/212 (67%), Gaps = 1/212 (0%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
D KI+ AVKEA+ AKPRNFTQSV++ +NLK++DL RPENR K ++VLP G GK++ IA
Sbjct: 2 DSVKIINAVKEARNSAKPRNFTQSVDLIINLKELDLSRPENRMKQQIVLPSGLGKEINIA 61
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
VIA G +A A +GL VI ELEE+ ++ +QA+KLA FFIA+A +MP +G+ LG
Sbjct: 62 VIAKGDLAAQAESMGLTVIRQEELEELGKNKKQAKKLANANQFFIAQADMMPIVGKSLGA 121
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
LGPR KMP VP +NL+P+VE+ KT+ I ++ VG E MSDEE+A NIE
Sbjct: 122 VLGPRGKMPQPVPAN-ANLKPLVERFGKTISINTRDKAFFQVYVGKESMSDEELAANIEA 180
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKVK 218
VLN + K E+G +K+ + K TMG + ++
Sbjct: 181 VLNTVARKYEKGLYHVKNAFTKLTMGASAPIE 212
>sp|P15824|RL1_METVA 50S RIBOSOMAL PROTEIN L1P (RIBOSOMAL PROTEIN ML6)
>gi|396697|emb|CAA34156.1| (X16023) ribosomal protein L1
[Methanococcus vannielii]
Length = 213
Score = 208 bits (524), Expect = 4e-53
Identities = 105/211 (49%), Positives = 144/211 (67%), Gaps = 1/211 (0%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
D +I +AVKEA+ AKPRNFTQSV++ VNLK++DL R ENR K ++VLP G+GKD KIA
Sbjct: 2 DSAQIQKAVKEARTLAKPRNFTQSVDLIVNLKELDLTRHENRLKEQIVLPSGKGKDTKIA 61
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
VIA G +A A +GL VI ELEE+ ++ + A+++A ++ FFIA+A +MP +G+ LG
Sbjct: 62 VIAKGDLAAQAAEMGLTVIRQEELEELGKNKKAAKRIANEHGFFIAQADMMPLVGKSLGP 121
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
LGPR KMP +P +NL P+V + KKTV I ++ + +GTE MSDEEIA N E
Sbjct: 122 VLGPRGKMPTPLPGN-ANLAPLVARFKKTVAINTRDKSLFQVYIGTEAMSDEEIAANAEA 180
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+LN + K E+G +KS + K TMG A +
Sbjct: 181 ILNVVAKKYEKGLYHVKSAFTKLTMGAAAPI 211
>gi|11499085 LSU ribosomal protein L1P (rpl1P) [Archaeoglobus fulgidus]
>gi|3914705|sp|O28782|RL1_ARCFU 50S RIBOSOMAL PROTEIN
L1P >gi|7440590|pir||A69436 LSU ribosomal protein L1P
(rpl1P) homolog - Archaeoglobus fulgidus
>gi|2649070|gb|AAB89750.1| (AE000999) LSU ribosomal
protein L1P (rpl1P) [Archaeoglobus fulgidus]
Length = 215
Score = 202 bits (509), Expect = 2e-51
Identities = 102/215 (47%), Positives = 147/215 (67%), Gaps = 2/215 (0%)
Query: 4 MPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
M D+ K+V++++EA K R F ++VE+AVNL+++D+K+PENR V LPHG GK
Sbjct: 1 MIVDKDKLVKSIEEAIKNGKKRRFVETVEMAVNLRNVDMKKPENRIDTVVNLPHGLGKPR 60
Query: 64 KIAVIADGAVAEAARRLGLD-VISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
KI V A G A A+ G D VI+ E++E+A+ R+A+KLA DFFIAEAPLMP+IGR
Sbjct: 61 KIGVFAKGDTALKAKEAGADVVITPEEIDELAKDKRRAKKLANSIDFFIAEAPLMPEIGR 120
Query: 123 YLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAE 182
LG LGPR K+P +PP +++ +P +++L+ +V+I+ ++ HAP+G+E M E+IAE
Sbjct: 121 KLGPVLGPRGKIPQPIPP-LADPKPFIDRLRNSVKIRTRDKTTFHAPIGSENMDVEKIAE 179
Query: 183 NIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
N +L + K E +KSVYVK TMGPAV+V
Sbjct: 180 NAMEILKVVENKYENPTQVVKSVYVKKTMGPAVRV 214
>pir||R5MX1 ribosomal protein L1 - Methanococcus vannielii
Length = 222
Score = 200 bits (503), Expect = 1e-50
Identities = 106/221 (47%), Positives = 145/221 (64%), Gaps = 12/221 (5%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVN----------LKDIDLKRPENRFKLEVVLP 56
D +I +AVKEA+ R KPRNFTQSV++ VN LK++DL RPENR K ++VLP
Sbjct: 2 DSAQIQKAVKEARTR-KPRNFTQSVDLIVNFTQSVDLIVNLKELDLTRPENRLKEQIVLP 60
Query: 57 HGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPL 116
G+GKD KIAVIA G +A A +GL VI ELEE+ ++ + A+++A ++ FFIA+A +
Sbjct: 61 SGKGKDTKIAVIAKGDLAAQAAEMGLTVIRQEELEELGKNKKAAKRIANEHGFFIAQADM 120
Query: 117 MPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMS 176
MP +G+ LG LGPR KMP +P +NL P+V + KKTV I ++ + +GTE MS
Sbjct: 121 MPLVGKSLGPVLGPRGKMPTPLPGN-ANLAPLVARFKKTVAINTRDKSLFQVYIGTEAMS 179
Query: 177 DEEIAENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
DEEIA N E +LN + K E+G +KS + K TMG A +
Sbjct: 180 DEEIAANAEAILNVVAKKYEKGLYHVKSAFTKLTMGAAAPI 220
>emb|CAC11504.1| (AL445064) probable 50S ribosomal protein L1 [Thermoplasma
acidophilum]
Length = 217
Score = 192 bits (483), Expect = 3e-48
Identities = 97/208 (46%), Positives = 137/208 (65%), Gaps = 1/208 (0%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
+ AV E K ++ R F +SVE+AVNLKD+D+ P+NR E++LP+GRGKDVKIAV
Sbjct: 6 VKRAVSEIKEKSPQRKFEESVEIAVNLKDVDMSNPKNRINEEILLPNGRGKDVKIAVFGS 65
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
+ AR + V + ++ + A+ + +K+ + FFIAEA LM IG+ LG+ LGP
Sbjct: 66 DELKSKARGVADFVFGAEDISKFAEDKKAFKKIVNQAYFFIAEATLMANIGKSLGQVLGP 125
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
R KMP +PP + P+++ LK TV+ + +N H PVGT M ++I+ENI TV+N
Sbjct: 126 RGKMPRPIPPG-QDPAPLIKNLKNTVKARSRNALTFHVPVGTRSMDADKISENIMTVINR 184
Query: 191 IIGKLERGESQIKSVYVKTTMGPAVKVK 218
I GKLERG S I+S+YVKTTMG AV++K
Sbjct: 185 ITGKLERGASNIRSIYVKTTMGNAVEIK 212
>sp|P12738|RL1_HALMA 50S RIBOSOMAL PROTEIN L1P (HMAL1) (HL8) >gi|71064|pir||R5HS1
ribosomal protein L1 [validated] - Haloarcula
marismortui >gi|43604|emb|CAA35794.1| (X51430) L1
ribosomal protein (AA 1-212) [Haloarcula marismortui]
Length = 212
Score = 171 bits (430), Expect = 4e-42
Identities = 95/209 (45%), Positives = 126/209 (59%), Gaps = 1/209 (0%)
Query: 9 QKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVI 68
Q+I AV A A RNF ++V++AVNL+D+DL P NR VVLP G G++ I V
Sbjct: 4 QEIENAVSRALEDAPERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVF 63
Query: 69 ADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYL 128
A+G A A + DV+ ELEE+ A+ LA DFFIAE LM IGRYLG L
Sbjct: 64 AEGETALRAEEVADDVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVL 123
Query: 129 GPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVL 188
GPR KMP + P +E ++E++K TV+++ H VG E MS E IA+NI+ +L
Sbjct: 124 GPRGKMPEPLDPDDDVVE-VIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVIL 182
Query: 189 NAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+ LE+G I +VYVKTTMGPA++V
Sbjct: 183 RRLHADLEKGPLNIDTVYVKTTMGPAMEV 211
>sp|P13575|RL1_HALHA 50S RIBOSOMAL PROTEIN L1P (HL8) >gi|71063|pir||R5HSLH ribosomal
protein L1 [validated] - Halobacterium salinarum
>gi|43533|emb|CAA31430.1| (X13008) ORF A ribosomal
protein (AA 1-212) [Halobacterium halobium]
>gi|10580652|gb|AAG19500.1| (AE005042) 50S ribosomal
protein L1P; Rpl1p [Halobacterium sp. NRC-1]
Length = 212
Score = 166 bits (416), Expect = 2e-40
Identities = 90/207 (43%), Positives = 126/207 (60%), Gaps = 1/207 (0%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
I EAV A A RNF ++V++AVNL+D+DL P R VVLP G G++ +I V AD
Sbjct: 6 IEEAVARALEDAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFAD 65
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
G A A + DV+ +L ++A A+ LA + DFF+AEAP+M I LG+ LGP
Sbjct: 66 GETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIAGALGQVLGP 125
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
R KMP + P ++ V ++K TV+I+ ++ H VG E MS E+IA NI+ ++
Sbjct: 126 RGKMPTPLQPD-DDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRR 184
Query: 191 IIGKLERGESQIKSVYVKTTMGPAVKV 217
+ LE+G + SVYVKTTMGPAV+V
Sbjct: 185 LHANLEKGPLNVDSVYVKTTMGPAVEV 211
>sp|P05966|RL1_HALCU 50S RIBOSOMAL PROTEIN L1P (HL8) >gi|71062|pir||R5HS1C ribosomal
protein L1 - Halobacterium cutirubrum
>gi|43453|emb|CAA33179.1| (X15078) L1e ribosomal protein
[Halobacterium cutirubrum]
Length = 212
Score = 165 bits (413), Expect = 4e-40
Identities = 90/207 (43%), Positives = 126/207 (60%), Gaps = 1/207 (0%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
I EAV A A RNF ++V++AVNL+D+DL P R VVLP G G++ +I V AD
Sbjct: 6 IEEAVARALEDAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFAD 65
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
G A A + DV+ +L ++A A+ LA + DFF+AEAP+M I LG+ LGP
Sbjct: 66 GETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIVGALGQVLGP 125
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
R KMP + P ++ V ++K TV+I+ ++ H VG E MS E+IA NI+ ++
Sbjct: 126 RGKMPTPLQPD-DDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRR 184
Query: 191 IIGKLERGESQIKSVYVKTTMGPAVKV 217
+ LE+G + SVYVKTTMGPAV+V
Sbjct: 185 LHANLEKGPLNVDSVYVKTTMGPAVEV 211
>sp|P41199|RL1_HALVO 50S RIBOSOMAL PROTEIN L1P >gi|421724|pir||S34135 ribosomal protein
L1 - Haloferax volcanii >gi|313017|emb|CAA41723.1|
(X58924) ribosomal protein L1e [Haloferax volcanii]
Length = 210
Score = 165 bits (413), Expect = 4e-40
Identities = 91/207 (43%), Positives = 126/207 (59%), Gaps = 3/207 (1%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
IV+AV A A RNF ++V++AVNL+D+DL P R +VLP G G+D +I V A
Sbjct: 5 IVDAVSRALDEAPGRNFRETVDLAVNLRDLDLNDPSKRVDESIVLPSGTGQDTQIVVFAT 64
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
G A A +V+ ELE+ A+ LA + DFF+AEA LM IGRYLG LGP
Sbjct: 65 GETA--AEDAADEVLGPDELEDFGDDTDAAKDLADETDFFVAEAGLMQDIGRYLGTVLGP 122
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
R KMP + P +E V ++K TV+++ ++ H VG + M+ +EIAENI+ ++
Sbjct: 123 RGKMPTPLQPDDDVVET-VNRMKNTVQLRSRDRRTFHTRVGADDMTPDEIAENIDVIVRR 181
Query: 191 IIGKLERGESQIKSVYVKTTMGPAVKV 217
+ LE+G I SVYVKTTMGP+V+V
Sbjct: 182 LEATLEKGPLNIDSVYVKTTMGPSVEV 208
>sp|Q9Y9W6|RL1_AERPE 50S RIBOSOMAL PROTEIN L1P >gi|7440587|pir||H72524 probable
ribosomal protein L1 APE2173 - Aeropyrum pernix (strain
K1) >gi|5105872|dbj|BAA81184.1| (AP000063) 212aa long
hypothetical 50S ribosomal protein L1 [Aeropyrum pernix]
Length = 212
Score = 158 bits (395), Expect = 6e-38
Identities = 85/207 (41%), Positives = 130/207 (62%), Gaps = 3/207 (1%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
I EA+ ++ + + F QSVE+ V LKDIDLK P+ R + V LP+ K+ K+ V+A
Sbjct: 5 IEEAIDKSLKLGRGKRFKQSVEIIVALKDIDLKSPQARIRETVFLPNRPPKEAKVCVVAH 64
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
G + A+ G++V++ +L+ ++Q+ R+ +KLA++ + + A LM GR LG LGP
Sbjct: 65 GDMELQAKEAGVEVLNRQDLQNLSQNKREVKKLARRCYWVLVRADLMGLAGRILGPALGP 124
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
R K PV VPP +N++ ++E+ K V ++++N P V A +GTE MS E+AEN VL
Sbjct: 125 RGKAPVPVPPN-ANIKDLIERYKAAVWVRIRNQPQVMARIGTEDMSPRELAENALAVLQV 183
Query: 191 IIGKLERGESQIKSVYVKTTMGPAVKV 217
I +L RG +I +YVK TMGP V+V
Sbjct: 184 IENRLGRG--KISRIYVKKTMGPPVEV 208
>sp|P35024|RL1_SULAC 50S RIBOSOMAL PROTEIN L1P >gi|2119102|pir||S53649 ribosomal protein
L1 - Sulfolobus acidocaldarius
>gi|763028|emb|CAA41763.1| (X59038) ribosomal protein L1
[Sulfolobus solfataricus]
Length = 221
Score = 131 bits (326), Expect = 7e-30
Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%)
Query: 1 MSRMPFDRQKIVEAVKEAKARAK--PRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHG 58
M ++ D++ ++EA+K A + RNFTQSVE+ + K ID+K+ + + + V LP
Sbjct: 1 MKKVLADKESLIEALKLALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQ 60
Query: 59 RGKDVKIAVIADGAVAEAARRLGLDV-ISSAELEEIAQSPRQARKLAKKYDFFIAEAPLM 117
K ++ V+ E A++ V I+ EL+++ R +KLA + ++F+ M
Sbjct: 61 PSKAKRVLVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLAIQNEWFLINQESM 120
Query: 118 PKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSD 177
GR LG LGPR K P +P T +++ + + K++V ++ K+ P V +GTE M
Sbjct: 121 ALAGRILGPALGPRGKFPTPLPNT-ADISEYINRFKRSVIVKTKDQPQVQVFIGTEDMKP 179
Query: 178 EEIAENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKVK 218
E++AEN VLNAI K + E+ ++++YVKTTMG AVKVK
Sbjct: 180 EDLAENAIAVLNAIENK-AKVETNLRNIYVKTTMGKAVKVK 219
>dbj|BAB08343.1| (AB007651) 60S ribosomal protein L10A [Arabidopsis thaliana]
Length = 217
Score = 115 bits (285), Expect = 4e-25
Identities = 67/212 (31%), Positives = 119/212 (55%), Gaps = 9/212 (4%)
Query: 13 EAVKEAKA-------RAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
EAV+EA + KPRNFT+++E+ + LK+ D ++ + RF V LPH +KI
Sbjct: 7 EAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHVPRPKMKI 65
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
++ D E A ++GL+ + L+++ ++ + +KLAKK+ F+A ++ +I R LG
Sbjct: 66 CMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLG 125
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
L K P +V +LE V + K TV+ QLK + VG M +++I +N++
Sbjct: 126 PGLNKAGKFPTLV-SHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQ 184
Query: 186 TVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N ++ L++ ++ +Y+K+TMGP +V
Sbjct: 185 MSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRV 216
>gb|AAK40674.1| LSU ribosomal protein L1AB (rpl1AB) [Sulfolobus solfataricus]
Length = 218
Score = 113 bits (281), Expect = 1e-24
Identities = 66/196 (33%), Positives = 113/196 (56%), Gaps = 6/196 (3%)
Query: 25 RNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLD- 83
RNF QSVE+ V K++D+K+ + + + VVLP K K+ V+ E A++ +
Sbjct: 25 RNFVQSVEIIVTFKEVDMKKGDLKLREIVVLPKPPEKTKKVLVVPTIQQLEYAKKAEPNT 84
Query: 84 VISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS 143
+++ EL+++ + R +K+A++ D+F+ M +GR LG LGPR K P +P T +
Sbjct: 85 ILTKEELQKLQGNKRAIKKIARQNDWFLIAPDSMALVGRILGPALGPRGKFPTPLPNT-A 143
Query: 144 NLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQ-I 202
++ + + K++ ++ K+ P +GTE ++AEN VLN I K G +Q +
Sbjct: 144 DISEYILRFKRSTLVKTKDQPQTQVFIGTESQQIADLAENALAVLNVIESK---GYAQKV 200
Query: 203 KSVYVKTTMGPAVKVK 218
+++YVKTTMG VKV+
Sbjct: 201 RNIYVKTTMGKVVKVE 216
>sp|P96038|RL1_SULSO 50S RIBOSOMAL PROTEIN L1P >gi|1814428|gb|AAB99525.1| (U85262)
ribosomal protein L1 [Sulfolobus solfataricus]
Length = 218
Score = 113 bits (281), Expect = 1e-24
Identities = 66/196 (33%), Positives = 113/196 (56%), Gaps = 6/196 (3%)
Query: 25 RNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLD- 83
RNF QSVE+ V K++D+K+ + + + VVLP K K+ V+ E A++ +
Sbjct: 25 RNFVQSVEIIVTFKEVDMKKGDLKLREIVVLPKPPEKTKKVLVVPTIQQLEYAKKAEPNT 84
Query: 84 VISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS 143
+++ EL+++ + R +K+A++ D+F+ M +GR LG LGPR K P +P T +
Sbjct: 85 ILTKEELQKLQGNKRAIKKIARQNDWFLIAPDSMALVGRILGPALGPRGKFPTPLPNT-A 143
Query: 144 NLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQ-I 202
++ + + K++ ++ K+ P +GTE ++AEN VLN I K G +Q +
Sbjct: 144 DISEYILRFKRSTLVKTKDQPQTQVFIGTESQQIADLAENALAVLNVIESK---GYAQKV 200
Query: 203 KSVYVKTTMGPAVKVK 218
+++YVKTTMG VKV+
Sbjct: 201 RNIYVKTTMGKVVKVE 216
>gb|AAC73045.1| (AC005824) 60S ribosomal protein L10A [Arabidopsis thaliana]
Length = 222
Score = 111 bits (274), Expect = 9e-24
Identities = 65/211 (30%), Positives = 116/211 (54%), Gaps = 8/211 (3%)
Query: 13 EAVKEA------KARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
EAV+EA K+ K RNF ++VE+ + LK+ D ++ + RF V LPH +KI
Sbjct: 13 EAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKIC 71
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
++ D E A ++GL + L+++ ++ + +KLAK Y F+A ++ +I R LG
Sbjct: 72 MLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGP 131
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
L K P +V +LE V + K TV+ QLK + VG M ++++ +N++
Sbjct: 132 GLNKAGKFPTLV-SHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQM 190
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N ++ L++ ++ +Y+K+TMGP ++
Sbjct: 191 SVNFLVSLLKKNWQNVRCLYLKSTMGPPQRI 221
>sp|O14363|R10A_SCHPO 60S RIBOSOMAL PROTEIN L1-A (L10A) >gi|7490007|pir||T40178 60s
ribosomal protein L10 - fission yeast
(Schizosaccharomyces pombe) >gi|2276367|emb|CAB10813.1|
(Z97992) 60s ribosomal protein L10 [Schizosaccharomyces
pombe]
Length = 216
Score = 108 bits (267), Expect = 6e-23
Identities = 66/208 (31%), Positives = 117/208 (55%), Gaps = 3/208 (1%)
Query: 5 PFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVK 64
P + + VE + + + K RNFT++VE+ + LK+ D +R + RF + LP+ ++
Sbjct: 6 PANIRSSVETILKG-SEEKKRNFTETVELQIGLKNYDPQR-DKRFSGTIKLPNVPRPNMS 63
Query: 65 IAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYL 124
I ++ D + A+ G+D +S +L+++ ++ + +KLAKKYD FIA L+ +I R L
Sbjct: 64 ICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLL 123
Query: 125 GKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENI 184
G L K P V + I+E +K T++ QLK + VG M++E++A N+
Sbjct: 124 GPGLSKAGKFPSPVSHSDDLYGKIIE-VKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANL 182
Query: 185 ETVLNAIIGKLERGESQIKSVYVKTTMG 212
+N ++ L++G I S+ +K+TMG
Sbjct: 183 SLAINFLVSLLKKGWQNIGSLVIKSTMG 210
>sp|O74836|R10B_SCHPO 60S RIBOSOMAL PROTEIN L1-B (L10A) >gi|7490008|pir||T40848 60s
ribosomal protein l10a - fission yeast
(Schizosaccharomyces pombe) >gi|3650379|emb|CAA21088.1|
(AL031740) 60s ribosomal protein l10a.
[Schizosaccharomyces pombe]
Length = 216
Score = 106 bits (263), Expect = 2e-22
Identities = 64/190 (33%), Positives = 109/190 (56%), Gaps = 2/190 (1%)
Query: 23 KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGL 82
K RNFT++VE+ + LK+ D +R + RF + LP+ ++ I ++ D + A+ G+
Sbjct: 23 KKRNFTETVELQIGLKNYDPQR-DKRFSGTIKLPNVPRPNMAICILGDAHDLDRAKHGGV 81
Query: 83 DVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTM 142
D +S +L+++ ++ + +KLAKKYD FIA L+ +I R LG L K P V
Sbjct: 82 DAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHA- 140
Query: 143 SNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQI 202
+L + ++K T++ QLK + VG +MS+E++ NI +N ++ L++G I
Sbjct: 141 DDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNI 200
Query: 203 KSVYVKTTMG 212
S+ VK+TMG
Sbjct: 201 GSLVVKSTMG 210
>gb|AAF50002.1| (AE003543) CG7283 gene product [Drosophila melanogaster]
Length = 234
Score = 101 bits (250), Expect = 6e-21
Identities = 59/202 (29%), Positives = 112/202 (55%), Gaps = 3/202 (1%)
Query: 12 VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
V + EA A+ K R F ++VE+ + LK+ D ++ + RF V L H +K+ ++ D
Sbjct: 31 VNGLLEASAKKK-RGFLETVELQIGLKNYDPQK-DKRFSGTVKLKHIPRPKMKVCILGDQ 88
Query: 72 AVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPR 131
+ A+ +D + + L+++ ++ + +KLAK YD F+A L+ +I R LG L
Sbjct: 89 QHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKA 148
Query: 132 NKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAI 191
K P ++ S + I E++K T++ Q+K + VG M +E+A+N+ +N +
Sbjct: 149 GKFPALLSHQESMIGKI-EEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFL 207
Query: 192 IGKLERGESQIKSVYVKTTMGP 213
+ L++ ++S++VK++MGP
Sbjct: 208 VSLLKKNWQNVRSLHVKSSMGP 229
>gb|AAG09267.1| (AF176664) L1 [EDTA-degrading bacterium BNC1]
Length = 232
Score = 101 bits (248), Expect = 1e-20
Identities = 71/209 (33%), Positives = 110/209 (51%), Gaps = 13/209 (6%)
Query: 13 EAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGA 72
EAVK K RA + F +++EVA+NL +D + + + V LP+G G+ V++AV A G
Sbjct: 25 EAVKVIKERATAK-FDETIEVAMNL-GVDPRHADQMVRGVVNLPNGTGRSVRVAVFAKGD 82
Query: 73 VAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRN 132
A+ A+ G D++ + +L E Q K +D IA +MP +GR LGK LGPR
Sbjct: 83 KADEAKAAGADIVGAEDLVETVQ------KGEINFDRCIATPDMMPLVGR-LGKVLGPRG 135
Query: 133 KMPVVVPPTMSNLEPIVEKLKK--TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
MP T++ K K V+ +++ +VHA VG + IAEN+ +A
Sbjct: 136 LMPNPKVGTVTTDVAAAVKASKGGAVQFRVEKAGIVHAGVGKVSFDENAIAENVRAFADA 195
Query: 191 IIGKLERGE--SQIKSVYVKTTMGPAVKV 217
+I G + +K V + +TMGP +K+
Sbjct: 196 VIKAKPSGAKGNYLKRVSITSTMGPGLKI 224
>emb|CAB56219.1| (AJ011417) L10A ribosomal protein [Candida albicans]
Length = 217
Score = 99.1 bits (243), Expect = 4e-20
Identities = 60/209 (28%), Positives = 109/209 (51%), Gaps = 2/209 (0%)
Query: 9 QKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVI 68
++ V + E K RNF ++VE+ V LK+ D +R + RF + LP ++ +
Sbjct: 10 REYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQR-DKRFSGTLKLPQVPRPNMTTCIF 68
Query: 69 ADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYL 128
D + A+ LG+D +S +L+++ ++ + +KLAKKY+ FIA L+ +I R LG+ L
Sbjct: 69 GDAFDFDRAKSLGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQIPRLLGRTL 128
Query: 129 GPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVL 188
+ P V +L V +K T++ QLK + VG M ++ + I
Sbjct: 129 SKAGQFPTPVSHN-DDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAA 187
Query: 189 NAIIGKLERGESQIKSVYVKTTMGPAVKV 217
N ++ L++ + S+ +K+TMGP+ ++
Sbjct: 188 NFLVSLLKKNWQNVGSLVIKSTMGPSFRI 216
>sp|P44342|RL1_HAEIN 50S RIBOSOMAL PROTEIN L1 >gi|1075228|pir||I64073 ribosomal protein
L1 - Haemophilus influenzae (strain Rd KW20)
>gi|1573499|gb|AAC22174.1| (U32734) ribosomal protein L1
(rpL1) [Haemophilus influenzae Rd]
Length = 229
Score = 98.3 bits (241), Expect = 6e-20
Identities = 71/216 (32%), Positives = 113/216 (51%), Gaps = 21/216 (9%)
Query: 10 KIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIA 69
+I EA+ K A + F +SV+VAVNL ID ++ + + VLPHG G++V++AV
Sbjct: 22 EINEAIAVLKQFATAK-FVESVDVAVNL-GIDPRKSDQNVRGATVLPHGTGREVRVAVFT 79
Query: 70 DGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
GA A+AA+ G D++ +L E Q +K +D IA M +G+ LG+ LG
Sbjct: 80 QGANADAAKEAGADLVGMEDLAE------QIKKGEMNFDVVIASPDAMRVVGQ-LGQVLG 132
Query: 130 PRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEIAENI 184
PR MP P + + P V + K +R + N ++H +G S+ ++ EN+
Sbjct: 133 PRGLMP---NPKVGTVTPNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKANFSEVQLKENL 189
Query: 185 ETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
+ +L A + K + ++ IK V + TTMG V V
Sbjct: 190 QALL-AALNKAKPTTAKGIFIKKVSISTTMGAGVAV 224
>gi|11418527 ribosomal protein L10a [Homo sapiens]
>gi|1709974|sp|P52859|R10A_RAT 60S RIBOSOMAL PROTEIN
L10A >gi|2143564|pir||JC4677 ribosomal protein L10a,
cytosolic [validated] - rat >gi|1370289|emb|CAA63732.1|
(X93352) ribosomal protein L10a [Rattus norvegicus]
>gi|4490422|emb|CAB38627.1| (AL022721) dJ109F14.2 (60S
Ribosomal Protein RPL10A) [Homo sapiens]
Length = 217
Score = 97.5 bits (239), Expect = 1e-19
Identities = 59/207 (28%), Positives = 112/207 (53%), Gaps = 4/207 (1%)
Query: 8 RQKIVEAVKEAKA--RAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
R + EAV+E + K R F ++VE+ ++LK+ D ++ + RF V L +
Sbjct: 7 RDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQK-DKRFSGTVRLKSTPRPKFSV 65
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V+ D + A+ + + + L+++ ++ + +KLAKKYD F+A L+ +I R LG
Sbjct: 66 CVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILG 125
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
L K P ++ N+ V+++K T++ Q+K + VG KM+D+E+ NI
Sbjct: 126 PGLNKAGKFPSLLTHN-ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIH 184
Query: 186 TVLNAIIGKLERGESQIKSVYVKTTMG 212
+N ++ L++ ++++Y+K+TMG
Sbjct: 185 LAVNFLVSLLKKNWQNVRALYIKSTMG 211
>sp|P29393|RL1_THEMA 50S RIBOSOMAL PROTEIN L1 >gi|71061|pir||R5HG1T ribosomal protein L1
- Thermotoga maritima (strain MSB8)
>gi|48185|emb|CAA77860.1| (Z11839) ribosomal protein L1
[Thermotoga maritima]
>gi|4980961|gb|AAD35538.1|AE001723_8 (AE001723)
ribosomal protein L1 [Thermotoga maritima]
Length = 233
Score = 96.7 bits (237), Expect = 2e-19
Identities = 71/220 (32%), Positives = 110/220 (49%), Gaps = 23/220 (10%)
Query: 6 FDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
+D + +E VK+ A AK F +++E+ + ID ++PE + +VLPHG GK+VK+
Sbjct: 21 YDLDEAIELVKKT-ATAK---FDETIELHIQT-GIDYRKPEQHIRGTIVLPHGTGKEVKV 75
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKK----YDFFIAEAPLMPKIG 121
V A G A+ A G D + + +L E K+ K+ +D IA +M IG
Sbjct: 76 LVFAKGEKAKEALEAGADYVGAEDLVE---------KIEKEGFLDFDVAIATPDMMRIIG 126
Query: 122 RYLGKYLGPRNKMPVVVPPTMSN--LEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEE 179
R LGK LGPR MP T++ E + E K + ++ +H PVG +E+
Sbjct: 127 R-LGKILGPRGLMPSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEK 185
Query: 180 IAENIETVLNAIIGKLERGESQ--IKSVYVKTTMGPAVKV 217
+ ENI + I+ G IK V + +TMGP +K+
Sbjct: 186 LKENIIAAIKQIMQMKPAGVKGQFIKKVVLASTMGPGIKL 225
>gi|6321303 Ribosomal protein L1B; Rpl1bp [Saccharomyces cerevisiae]
>gi|6325036|ref|NP_015104.1| Ribosomal protein L1A,
forms part of the 60S ribosomal subunit; Rpl1ap
[Saccharomyces cerevisiae]
>gi|1709976|sp|P53030|R10A_YEAST 60S RIBOSOMAL PROTEIN
L1 (L10A) >gi|1078395|pir||S53893 ribosomal protein
L10a.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|732949|emb|CAA50314.1| (X70985) SSM1a [Saccharomyces
cerevisiae] >gi|732951|emb|CAA50315.1| (X70986) SSM1b
[Saccharomyces cerevisiae] >gi|1246843|emb|CAA63361.1|
(X92670) see also X70986 [Saccharomyces cerevisiae]
>gi|1322706|emb|CAA96846.1| (Z72657) ORF YGL135w
[Saccharomyces cerevisiae] >gi|1370456|emb|CAA97935.1|
(Z73576) ORF YPL220w [Saccharomyces cerevisiae]
Length = 217
Score = 96.7 bits (237), Expect = 2e-19
Identities = 60/210 (28%), Positives = 112/210 (52%), Gaps = 3/210 (1%)
Query: 8 RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAV 67
R+ + E +K + K RNF ++VE+ V LK+ D +R + RF + LP+ ++ I +
Sbjct: 10 REHVKELLKYSN-ETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICI 67
Query: 68 IADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKY 127
D + A+ G+D +S +L+++ ++ + +KL+KKY+ FIA L+ ++ R LG
Sbjct: 68 FGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQ 127
Query: 128 LGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETV 187
L K P V +L V ++ T++ QLK + VG +M ++ + I
Sbjct: 128 LSKAGKFPTPVSHN-DDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMS 186
Query: 188 LNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N + L++ + S+ VK++MGPA ++
Sbjct: 187 VNFFVSLLKKNWQNVGSLVVKSSMGPAFRL 216
>gb|AAF36008.1| (AC024200) contains similarity to Pfam family PF00687 (Ribosomal_L1
L1P family of ribosomal proteins), score=233.0,
E=4.3e-66, N=1 [Caenorhabditis elegans]
Length = 216
Score = 96.3 bits (236), Expect = 2e-19
Identities = 61/212 (28%), Positives = 113/212 (52%), Gaps = 4/212 (1%)
Query: 8 RQKIVEAVKEAK--ARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
R+ + EA+ E + KPR F +++E+ + LK+ D ++ + RF + L H ++K+
Sbjct: 6 RESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQK-DKRFSGSIRLKHIPRPNMKV 64
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V D + A + +S+ +L+++ + + +KLAK YD FIA L+ +I R LG
Sbjct: 65 CVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILG 124
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
L K P VV S L+ ++++ TV+ Q+K + VG ++ EE+ NI
Sbjct: 125 PGLNKAGKFPSVVTHGES-LQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNIS 183
Query: 186 TVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N ++ L++ ++S+ +K+TMG +V
Sbjct: 184 LSINFLVSLLKKNWQNVRSLNIKSTMGKPQRV 215
>sp|O32614|RL1_HAEDU 50S RIBOSOMAL PROTEIN L1 >gi|2267574|gb|AAB63584.1| (AF009342)
ribosomal protein L1 [Haemophilus ducreyi]
Length = 253
Score = 96.3 bits (236), Expect = 2e-19
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 10 KIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIA 69
+I EA+ K A + F +SV+VAVNL ID ++ + + VLPHG G+ ++AV
Sbjct: 22 EINEAIALLKQFATAK-FVESVDVAVNL-GIDPRKSDQNVRGATVLPHGTGRSARVAVFT 79
Query: 70 DGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
GA AEAA+ G D++ +L E Q +K +D IA M +G+ LG+ LG
Sbjct: 80 QGANAEAAKAAGADLVGMEDLAE------QIKKGEMNFDVVIASPDAMRVVGQ-LGQVLG 132
Query: 130 PRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETV 187
PR M P V T++ E + +R + N ++H +G S+ ++ EN++ +
Sbjct: 133 PRGLMPNPKVGTVTLNVAEAVKNAKSGQIRYRNDKNGIIHTTIGKVDFSEVQLKENLQAL 192
Query: 188 LNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
L A + K + ++ IK V V TTMG V V
Sbjct: 193 L-AALNKAKPTTAKGIFIKKVSVSTTMGAGVAV 224
>sp|P02384|RL1_ECOLI 50S RIBOSOMAL PROTEIN L1 >gi|71057|pir||R5EC1 ribosomal protein L1
[validated] - Escherichia coli >gi|42815|emb|CAA23622.1|
(V00339) rplA (L1) [Escherichia coli]
>gi|396323|gb|AAC43082.1| (U00006) 50S ribosomal subunit
protein L1 [Escherichia coli] >gi|1790416|gb|AAC76958.1|
(AE000472) 50S ribosomal subunit protein L1, regulates
synthesis of L1 and L11 [Escherichia coli K12]
Length = 234
Score = 96.0 bits (235), Expect = 3e-19
Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 28/222 (12%)
Query: 6 FDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
+D + + +KE A AK F +SV+VAVNL ID ++ + + VLPHG G+ V++
Sbjct: 21 YDINEAIALLKEL-ATAK---FVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRV 75
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
AV GA AEAA+ G +++ +L + Q +K +D IA M +G+ LG
Sbjct: 76 AVFTQGANAEAAKAAGAELVGMEDLAD------QIKKGEMNFDVVIASPDAMRVVGQ-LG 128
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEI 180
+ LGPR MP P + + P V + K VR + N ++H +G +++
Sbjct: 129 QVLGPRGLMP---NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKL 185
Query: 181 AENIETVLNAIIGKLERGESQIKSVYVK-----TTMGPAVKV 217
EN+E +L A+ + +Q K VY+K TTMG V V
Sbjct: 186 KENLEALLVAL---KKAKPTQAKGVYIKKVSISTTMGAGVAV 224
>gi|6325472 ribosomal protein L10a; neural precursor cell expressed,
developmentally down-regulated 6 [Homo sapiens]
>gi|1709971|sp|P53025|R10A_HUMAN 60S RIBOSOMAL PROTEIN
L10A (CSA-19) >gi|531171|gb|AAA86463.1| (U12404) Csa-19
[Homo sapiens]
Length = 217
Score = 96.0 bits (235), Expect = 3e-19
Identities = 58/207 (28%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
Query: 8 RQKIVEAVKEAKA--RAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
R + EAV+E + K R F ++VE+ ++LK+ D ++ + RF V L +
Sbjct: 7 RDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQK-DKRFSGTVRLKSTPRPKFSV 65
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V+ D + A+ + + + L+++ ++ + +KL KKYD F+A L+ +I R LG
Sbjct: 66 CVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLVKKYDAFLASESLIKQIPRILG 125
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
L K P ++ N+ V+++K T++ Q+K + VG KM+D+E+ NI
Sbjct: 126 PGLNKAGKFPSLLTHN-ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIH 184
Query: 186 TVLNAIIGKLERGESQIKSVYVKTTMG 212
+N ++ L++ ++++Y+K+TMG
Sbjct: 185 LAVNFLVSLLKKNWQNVRALYIKSTMG 211
>gi|6755350 ribospsmal protein L10A [Mus musculus]
>gi|1709972|sp|P53026|R10A_MOUSE 60S RIBOSOMAL PROTEIN
L10A (CSA-19) (NEDD-6) >gi|531169|gb|AAA86464.1|
(U12403) Csa-19 [Mus musculus]
Length = 217
Score = 95.6 bits (234), Expect = 4e-19
Identities = 58/207 (28%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
Query: 8 RQKIVEAVKEAKA--RAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
R + EAV+E + K R F ++VE+ ++LK+ D ++ + RF V L +
Sbjct: 7 RDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQK-DKRFSGTVRLKSTPRPKFSV 65
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V+ D + + + + + L+++ ++ + +KLAKKYD F+A L+ +I R LG
Sbjct: 66 CVLGDQQHCDERKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILG 125
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
L K P ++ N+ V+++K T++ Q+K + VG KM+D+E+ NI
Sbjct: 126 PGLNKAGKFPSLLTHN-ENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIH 184
Query: 186 TVLNAIIGKLERGESQIKSVYVKTTMG 212
+N ++ L++ ++++Y+K+TMG
Sbjct: 185 LAVNFLVSLLKKNWQNVRALYIKSTMG 211
>sp|P53028|R10A_TRYBR 60S RIBOSOMAL PROTEIN L10A >gi|1123023|gb|AAA83443.1| (U34620)
NEDD-6 like protein [Trypanosoma brucei]
Length = 214
Score = 95.6 bits (234), Expect = 4e-19
Identities = 54/217 (24%), Positives = 117/217 (53%), Gaps = 4/217 (1%)
Query: 1 MSRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRG 60
MS++P + EA++ K R F +S+++ VNLK+ D ++ + RF V LPH
Sbjct: 1 MSKIP--PALLSEAIQNVLKDRKERKFKESIDLQVNLKNYDPQK-DKRFSGSVRLPHVCR 57
Query: 61 KDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKI 120
+ + ++ D + A++ + ++ EL+++ ++ + +K+ +YD F+ ++ +
Sbjct: 58 PRMTVCLLCDLVHEDIAKKNDVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTV 117
Query: 121 GRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
R +G ++ K P V S + ++E L+ TV+ QLK + VG M+++++
Sbjct: 118 PRLVGPHMHRVGKFPTVCAQNESLPDKVLE-LQSTVKFQLKKVLCLGTCVGHVDMTEDQV 176
Query: 181 AENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N+ +N ++ L++ +KS Y+K+TMG + ++
Sbjct: 177 RQNVVMAINFLVSLLKKNWQNLKSAYIKSTMGKSQRI 213
>pir||C82338 ribosomal protein L1 VC0325 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9654738|gb|AAF93498.1| (AE004120)
ribosomal protein L1 [Vibrio cholerae]
Length = 233
Score = 95.6 bits (234), Expect = 4e-19
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 26/221 (11%)
Query: 6 FDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
+D + V +KE A AK F +SV+VAVNL ID ++ + + VLPHG G+D+++
Sbjct: 21 YDINEAVALLKEL-ATAK---FVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRDIRV 75
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
AV GA AEAA+ G +++ +L ++ +K +D IA M +G+ LG
Sbjct: 76 AVFTQGANAEAAKAAGAELVGMEDLADL------VKKGEMNFDVVIASPDAMRVVGQ-LG 128
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEI 180
LGPR MP P + + P V + K VR + N ++H +G +++
Sbjct: 129 TILGPRGLMP---NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQL 185
Query: 181 AENIETVLNAIIGKLERGESQ----IKSVYVKTTMGPAVKV 217
EN+E +L A+ K + S +K V + TTMG V V
Sbjct: 186 KENLEALLVAL--KKAKPSSAKGVFVKKVSISTTMGAGVAV 224
>sp|P09764|RL1_SERMA 50S RIBOSOMAL PROTEIN L1 >gi|71058|pir||R5SE1 ribosomal protein L1
- Serratia marcescens >gi|47257|emb|CAA31096.1| (X12584)
L1 protein (AA 1-234) [Serratia marcescens]
Length = 234
Score = 95.2 bits (233), Expect = 5e-19
Identities = 71/217 (32%), Positives = 109/217 (49%), Gaps = 25/217 (11%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
I EA+ K A + F +SV+VAVNL ID ++ + + VLPHG G+ V++AV
Sbjct: 23 ITEAIALLKELATAK-FVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQ 80
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
GA AEAA+ G +++ +L E Q +K +D IA M +G+ LG+ GP
Sbjct: 81 GANAEAAKAAGAELVGMEDLAE------QIKKGEMNFDVVIASPDAMRVVGQ-LGQISGP 133
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEIAENIE 185
R MP P + + P V + K VR + N ++H +G +++ EN+E
Sbjct: 134 RGLMP---NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLE 190
Query: 186 TVLNAIIGKLERGESQIKSVYVK-----TTMGPAVKV 217
+L A+ + SQ K +Y+K TTMG V +
Sbjct: 191 ALLVAL---KKAKPSQAKGMYIKKVSLSTTMGAGVAI 224
>gb|AAF33496.1| (AF170176) 98% identity over 233 amino acids to E. coli 50S
ribosomal subunit protein L1 (RPLA) (SW:P02384);
contains similarity to Pfam domain PF00687
(Ribosomal_L1), Score=439.8, E=2.4e-128, N=1 [Salmonella
typhimurium LT2]
Length = 234
Score = 95.2 bits (233), Expect = 5e-19
Identities = 73/222 (32%), Positives = 112/222 (49%), Gaps = 28/222 (12%)
Query: 6 FDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
+D + + +KE A AK F +SV+VAVNL ID ++ + + VLPHG G+ V++
Sbjct: 21 YDINEAIALLKEL-ATAK---FNESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRV 75
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
AV G AEAA+ G +++ +L + Q +K +D IA M +G+ LG
Sbjct: 76 AVFTQGPNAEAAKAAGAELVGMEDLAD------QIKKGEMNFDVVIASPDAMRVVGQ-LG 128
Query: 126 KYLGPRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEI 180
+ LGPR MP P + + P V + K VR + N ++H +G +++
Sbjct: 129 QVLGPRGLMP---NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKL 185
Query: 181 AENIETVLNAIIGKLERGESQIKSVYVK-----TTMGPAVKV 217
EN+E +L A+ + SQ K VY+K TTMG V V
Sbjct: 186 KENLEALLVAL---KKAKPSQAKGVYIKKVSISTTMGAGVAV 224
>gb|AAB30332.1| ribosomal protein L1, ribosomal protein TL2 [Thermus thermophilus,
VK-1, Peptide, 228 aa]
Length = 228
Score = 92.4 bits (226), Expect = 4e-18
Identities = 65/196 (33%), Positives = 100/196 (50%), Gaps = 13/196 (6%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F ++VEV L ID +R + + V LPHG GK V++ IA G + A G D +
Sbjct: 37 FDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 95
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-NL 145
EEI Q +D +A +M +G LG+ LGPR +P T+ N+
Sbjct: 96 G---EEIIQKILDG---WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNI 149
Query: 146 EPIVEKLKKTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGE--SQ 201
I+ ++ K RI+ +N+ +HAPVG E++A+NI + A+ G +
Sbjct: 150 GEIIREI-KAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTF 208
Query: 202 IKSVYVKTTMGPAVKV 217
++SVYV TTMGP+V++
Sbjct: 209 LRSVYVTTTMGPSVRI 224
>sp|P27150|RL1_THETH 50S RIBOSOMAL PROTEIN L1 >gi|2120598|pir||S66577 ribosomal protein
L1 - Thermus aquaticus (fragment) >gi|7245459|pdb|1EG0|N
Chain N, Fitting Of Components With Known Structure Into
An 11.5 A Cryo-Em Map Of The E.Coli 70s Ribosome
>gi|587584|emb|CAA57139.1| (X81375) ribosomal protein L1
[Thermus thermophilus]
Length = 229
Score = 92.4 bits (226), Expect = 4e-18
Identities = 65/196 (33%), Positives = 100/196 (50%), Gaps = 13/196 (6%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F ++VEV L ID +R + + V LPHG GK V++ IA G + A G D +
Sbjct: 38 FDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 96
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-NL 145
EEI Q +D +A +M +G LG+ LGPR +P T+ N+
Sbjct: 97 G---EEIIQKILDG---WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNI 150
Query: 146 EPIVEKLKKTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGE--SQ 201
I+ ++ K RI+ +N+ +HAPVG E++A+NI + A+ G +
Sbjct: 151 GEIIREI-KAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTF 209
Query: 202 IKSVYVKTTMGPAVKV 217
++SVYV TTMGP+V++
Sbjct: 210 LRSVYVTTTMGPSVRI 225
>sp|P10054|RL1_PROVU 50S RIBOSOMAL PROTEIN L1 >gi|71059|pir||R5EBPV ribosomal protein L1
- Proteus vulgaris >gi|45926|emb|CAA31098.1| (X12585) L1
protein (AA 1-233) [Proteus vulgaris]
Length = 233
Score = 92.1 bits (225), Expect = 5e-18
Identities = 71/218 (32%), Positives = 111/218 (50%), Gaps = 25/218 (11%)
Query: 10 KIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIA 69
+I EAV K A + F +SV+VAVNL ID ++ + + VLPHG G+ V++AV A
Sbjct: 22 EIAEAVALLKELATAK-FVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFA 79
Query: 70 DGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
GA AEAA+ G +++ ++++A + +D IA M +G+ LG+ LG
Sbjct: 80 QGANAEAAKEAGAELVG---MDDLAAKVKAGE---MDFDVVIASPDAMRVVGQ-LGQILG 132
Query: 130 PRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEIAENI 184
PR MP P + + P V + K VR + N ++H +G + ++ EN+
Sbjct: 133 PRGLMP---NPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVVSTKHKLKENL 189
Query: 185 ETVLNAIIGKLERGESQIKSVYVK-----TTMGPAVKV 217
E +L A+ + S K VY+K TTMG V +
Sbjct: 190 EALLVAL---KKAKPSAAKGVYIKKVSLSTTMGAGVAI 224
>sp|Q9X521|RL1_STRAU 50S RIBOSOMAL PROTEIN L1 >gi|4580993|gb|AAD24569.1|AF120458_2
(AF120458) ribosomal protein L1 [Streptomyces
aureofaciens]
Length = 242
Score = 91.7 bits (224), Expect = 6e-18
Identities = 72/220 (32%), Positives = 113/220 (50%), Gaps = 18/220 (8%)
Query: 7 DRQKI---VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR+K+ +EAV+ AK + + F +VEVA L +D ++ + + V LPHG GK
Sbjct: 15 DREKLYAPLEAVRLAKETSATK-FDSTVEVAFRL-GVDPRKADQMVRGTVNLPHGTGKTA 72
Query: 64 KIAVIADGAVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
++ V A G A AA G D++ EL EIA+ R ++D +A LM K+GR
Sbjct: 73 RVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNR-----LNEFDAVVATPDLMGKVGR 127
Query: 123 YLGKYLGPRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
LG+ LGPR M P TM + + E + ++ + +H +G SDE++
Sbjct: 128 -LGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVDKHSNLHFIIGKVSFSDEKL 186
Query: 181 AENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
EN L+ II +L+ ++ IK + TTMGP +++
Sbjct: 187 VENYAAALDEII-RLKPSAAKGRYIKKAALSTTMGPGIQL 225
>pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine
Length = 228
Score = 91.3 bits (223), Expect = 8e-18
Identities = 65/196 (33%), Positives = 100/196 (50%), Gaps = 13/196 (6%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F ++VEV L ID +R + + V LPHG GK V++ IA G + A G D +
Sbjct: 37 FDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 95
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-NL 145
EEI Q +D +A +M +G LG+ LGPR +P T+ N+
Sbjct: 96 G---EEIIQKILDG---WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNI 149
Query: 146 EPIVEKLKKTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGE--SQ 201
I+ ++ K RI+ +N+ +HAPVG E++A+NI + A+ G +
Sbjct: 150 GEIIREI-KAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTF 208
Query: 202 IKSVYVKTTMGPAVKV 217
++SVYV TTMGP+V++
Sbjct: 209 LRSVYVTTTMGPSVRI 224
>sp|O67759|RL1_AQUAE 50S RIBOSOMAL PROTEIN L1 >gi|7440575|pir||C70466 ribosomal protein
L01 - Aquifex aeolicus >gi|2984194|gb|AAC07725.1|
(AE000764) ribosomal protein L01 [Aquifex aeolicus]
Length = 242
Score = 91.3 bits (223), Expect = 8e-18
Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 19/201 (9%)
Query: 25 RNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDV 84
R F ++VE+A+ L ++D + + + VVLPHG GK +K+ V A+G A+ A G D
Sbjct: 39 RRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADY 97
Query: 85 ISSAELEEIAQSPRQARKLAKK----YDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPP 140
+ EL K+ K+ +D IA +MPK+ + LG+ LGPR MP
Sbjct: 98 VGGDEL---------INKILKEEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTG 147
Query: 141 TM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERG 198
T+ +N+E ++ K+ V ++ VH PVG E++ +N+ ++A++ G
Sbjct: 148 TVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPG 207
Query: 199 E--SQIKSVYVKTTMGPAVKV 217
IK++ V TM P+VK+
Sbjct: 208 AKGQYIKNMAVSLTMSPSVKL 228
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 91.3 bits (223), Expect = 8e-18
Identities = 65/196 (33%), Positives = 100/196 (50%), Gaps = 13/196 (6%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F ++VEV L ID +R + + V LPHG GK V++ IA G + A G D +
Sbjct: 33 FDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVG 91
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-NL 145
EEI Q +D +A +M +G LG+ LGPR +P T+ N+
Sbjct: 92 G---EEIIQKILDG---WMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNI 145
Query: 146 EPIVEKLKKTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGE--SQ 201
I+ ++ K RI+ +N+ +HAPVG E++A+NI + A+ G +
Sbjct: 146 GEIIREI-KAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTF 204
Query: 202 IKSVYVKTTMGPAVKV 217
++SVYV TTMGP+V++
Sbjct: 205 LRSVYVTTTMGPSVRI 220
>gb|AAD09993.1| (AF070993) ribosomal protein L10a [Trichomonas vaginalis]
Length = 215
Score = 90.5 bits (221), Expect = 1e-17
Identities = 51/209 (24%), Positives = 107/209 (50%), Gaps = 4/209 (1%)
Query: 9 QKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVI 68
QK ++ V E A+ K R F ++V++ + LK ++ + + RF + LPH +V+I V+
Sbjct: 10 QKAIKDVLEG-AKTKKRGFLETVDIQLKLKGYNVSK-DKRFVGSIKLPHIIRPNVRIGVL 67
Query: 69 ADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYL 128
+ E A++L + L + + + K++ F+A ++ ++ + LG+
Sbjct: 68 GNKVHCEEAQKLNIPAYDLPTLTNFNKEKKVVKAWTKRHHLFLASPDVIGQVNKVLGQVY 127
Query: 129 GPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVL 188
NK P + + +V+++K+T I+LK + P+G M++ ++ EN+
Sbjct: 128 TRANKFPTNIKT--DTVAKVVDEVKRTANIRLKKSVAFGIPIGNVNMTERQVFENLTLCT 185
Query: 189 NAIIGKLERGESQIKSVYVKTTMGPAVKV 217
N ++ L++G I S+ +K+TMG ++
Sbjct: 186 NYVVTLLKKGWQSIGSIVLKSTMGKVHRI 214
>sp|Q07976|RL1_STRSQ 50S RIBOSOMAL PROTEIN L1 >gi|541504|pir||S40771 ribosomal protein
L1 - Streptomyces sp >gi|303916|dbj|BAA03345.1| (D14450)
L1 [Streptomyces sp.]
Length = 242
Score = 90.1 bits (220), Expect = 2e-17
Identities = 70/220 (31%), Positives = 113/220 (50%), Gaps = 18/220 (8%)
Query: 7 DRQKI---VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR+K+ +EAV+ AK + + F +VEVA L +D ++ + + V LPHG GK
Sbjct: 15 DREKLYAPLEAVRLAKETSTTK-FDATVEVAFRL-GVDPRKADQMVRGTVNLPHGTGKTA 72
Query: 64 KIAVIADGAVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
++ V A G A AA G D++ EL EIA+ R ++D +A LM K+GR
Sbjct: 73 RVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNR-----LNEFDAVVATPDLMGKVGR 127
Query: 123 YLGKYLGPRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
LG+ LGPR M P TM + + + + ++ + +H +G SDE++
Sbjct: 128 -LGRVLGPRGLMPNPKTGTVTMDVAKAVTDIKGGKIEFRVDKHSNLHFIIGKVSFSDEQL 186
Query: 181 AENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
EN L+ I+ +L+ ++ IK + TTMGP +++
Sbjct: 187 VENYAAALDEIV-RLKPSAAKGRYIKKAALSTTMGPGIQL 225
>gb|AAD50305.1|AF175385_1 (AF175385) 60S ribosomal protein L10a [Chlamydomonas reinhardtii]
Length = 213
Score = 89.7 bits (219), Expect = 2e-17
Identities = 56/198 (28%), Positives = 103/198 (51%), Gaps = 5/198 (2%)
Query: 20 ARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARR 79
A+ KPR F ++VE+ + LK+ D ++ + RF V LP +++ D E A
Sbjct: 20 AKTKPRKFQETVELQIGLKNYDPQK-DKRFSGSVRLPFVPRPRMRVRA-GDVKHCEQAGA 77
Query: 80 LGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVP 139
+G+D +L+++ ++ + +KLA+ Y F+A ++ +I R LG L K P
Sbjct: 78 IGVDAKGVEDLKKLNKNKKLVKKLAQAYHAFLASDSVIKQIPRLLGPGLNKAGKFPA--- 134
Query: 140 PTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGE 199
P NLE +V K +++ QLK + V M++ EI NI +N ++ L++
Sbjct: 135 PINKNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNW 194
Query: 200 SQIKSVYVKTTMGPAVKV 217
++ +Y+K+TMG +++
Sbjct: 195 QNVRCLYIKSTMGKPIRI 212
>pir||F75323 ribosomal protein L1 - Deinococcus radiodurans (strain R1)
>gi|6459833|gb|AAF11592.1|AE002040_9 (AE002040)
ribosomal protein L1 [Deinococcus radiodurans]
Length = 233
Score = 89.3 bits (218), Expect = 3e-17
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 14 AVKEAKARAKP---RNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
++ EA A K F ++VEV L ID ++ + + V LPHG G+ V++AVI
Sbjct: 22 SIDEAAALVKELATAKFDETVEVHFRL-GIDPRKSDQNVRGTVALPHGTGRSVRVAVITK 80
Query: 71 GAVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
G +AA G DV+ S EL E IA +D +A +M +IG+ L + LG
Sbjct: 81 GENVQAAEAAGADVVGSDELIERIAGG-------FMDFDAVVATPDMMAQIGQKLARLLG 133
Query: 130 PRNKMPVVVPPTM-SNLEPIVEKLKKTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIET 186
PR +P T+ +++ +V L K RI+ +N+ VVHAP+G ++ N +
Sbjct: 134 PRGLLPNPKSGTVGADVAGMVRGL-KAGRIEFRNDKTGVVHAPIGKASFESGNLSANYQA 192
Query: 187 VLNAIIGKLERGESQ---IKSVYVKTTMGPAV 215
+++A+ G + G ++ ++S Y+ TTMGP++
Sbjct: 193 LISALEG-AKPGTAKGVFLRSAYLTTTMGPSI 223
>dbj|BAB03839.1| (AP001507) ribosomal protein L1 (BL1) [Bacillus halodurans]
Length = 231
Score = 88.5 bits (216), Expect = 5e-17
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 14/216 (6%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
D+ VE E +A F ++VEVAV L +D K+ + + + VVLP+G GK ++
Sbjct: 18 DQAYQVEEALELVKKASVAKFDETVEVAVRL-GVDPKKADQQIRGAVVLPNGTGKTQRVL 76
Query: 67 VIADGAVAEAARRLGLDVISSAE-LEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V A G A+ A G D + + + +I+Q +D +A +M ++G+ LG
Sbjct: 77 VFAKGEKAKEAEAAGADYVGDEDCINKISQG-------WFDFDVIVATPDMMAQVGK-LG 128
Query: 126 KYLGPRNKMPVVVPPTMS-NLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAEN 183
+ LGP+ MP T++ +E V +K V ++ +H P+G ++AEN
Sbjct: 129 RVLGPKGLMPNPKTGTVTFEVEKAVNDIKAGKVEYRVDKAGNIHVPIGKVSFDTAKLAEN 188
Query: 184 IETVLNAIIGKLERGE--SQIKSVYVKTTMGPAVKV 217
ET+++ ++ + +K++ V +TMGP VKV
Sbjct: 189 FETIIDTLVKAKPAAAKGTYLKNIAVSSTMGPGVKV 224
>sp|P48951|RL1_STRVG 50S RIBOSOMAL PROTEIN L1 >gi|7440588|pir||T11790 ribosomal protein
L1 - Streptomyces virginiae >gi|1217913|dbj|BAA09303.1|
(D50624) ribosomal protein L1 [Streptomyces virginiae]
Length = 242
Score = 88.2 bits (215), Expect = 7e-17
Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 18/218 (8%)
Query: 7 DRQKI---VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR+K+ +EAV+ AK + + F +VEVA L +D ++ + + V LPHG GK
Sbjct: 15 DREKLYAPLEAVRLAKETSTTK-FDGTVEVAFRL-GVDPRKADQMVRGTVNLPHGTGKTA 72
Query: 64 KIAVIADGAVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
++ V A G A AA G D++ EL EIA+ R ++D +A LM K+GR
Sbjct: 73 RVLVFATGDRAAAAEAAGADIVGDDELINEIAKGNR-----LNEFDAVVATPDLMGKVGR 127
Query: 123 YLGKYLGPRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEI 180
LG+ LGPR M P TM + + E + ++ + +H +G +DE++
Sbjct: 128 -LGRVLGPRGLMPNPKTGTVTMDVAKAVTEIKGGKIEFRVDKHSNLHFIIGKVSFTDEQL 186
Query: 181 AENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAV 215
EN L+ I+ +L+ ++ IK + TTMGP +
Sbjct: 187 VENYGAALDEIL-RLKPSAAKGRYIKKAALSTTMGPGI 223
>gb|AAF22886.1|AC006932_3 (AC006932) T27G7.6 [Arabidopsis thaliana]
Length = 189
Score = 87.4 bits (213), Expect = 1e-16
Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 35/211 (16%)
Query: 13 EAVKEA------KARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIA 66
EAV+EA K+ AK RNF +++E+ + LK+ D ++ + RF V LPH +KI
Sbjct: 7 EAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKIC 65
Query: 67 VIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGK 126
++ D E A ++GL+ + L+++ ++ + +KLAKKY F+A ++ +I R LG
Sbjct: 66 MLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGP 125
Query: 127 YLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIET 186
L K +QL + H G M +++I +N++
Sbjct: 126 GLNKAGKF----------------------WLQL----IFH--FGNLSMEEKQIFQNVQM 157
Query: 187 VLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+N ++ L++ ++ +Y+K+TMGP ++
Sbjct: 158 SVNFLVSLLKKNWQNVRCLYLKSTMGPPQRI 188
>pir||B83111 50S ribosomal protein L1 PA4273 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950492|gb|AAG07661.1|AE004843_3
(AE004843) 50S ribosomal protein L1 [Pseudomonas
aeruginosa]
Length = 231
Score = 87.0 bits (212), Expect = 2e-16
Identities = 67/218 (30%), Positives = 105/218 (47%), Gaps = 20/218 (9%)
Query: 8 RQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAV 67
+Q E + A F +SV+VAVNL +D ++ + + VLP+G GK V++AV
Sbjct: 19 KQYSFEEAAKLLAELSTIKFKESVDVAVNL-GVDPRKSDQVVRGATVLPNGTGKSVRVAV 77
Query: 68 IADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKY 127
G AEAA G D + EL + + YD IA M +G+ LG+
Sbjct: 78 FTQGPAAEAALAAGADKVGMDEL------AAEMKGGDLNYDVVIASPDAMRVVGQ-LGQI 130
Query: 128 LGPRNKMPVVVPPTMSNLEPIVEKLKKT-----VRIQLKNNPVVHAPVGTEKMSDEEIAE 182
LGPR MP P + + P V K VR + N ++H+ VG ++ +
Sbjct: 131 LGPRGLMP---NPKVGTVTPDVATAVKNAKAGQVRFRTDKNGIIHSSVGKVDFEPAKLQQ 187
Query: 183 NIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
N+E +L A + +L+ S+ +K V + TTMGP +++
Sbjct: 188 NVEALL-ADLKRLKPSSSKGVYVKRVTLSTTMGPGLQI 224
>gi|11467612 ribosomal protein L1 [Guillardia theta]
>gi|6093980|sp|O78413|RK1_GUITH CHLOROPLAST 50S
RIBOSOMAL PROTEIN L1 >gi|3602937|gb|AAC35598.1|
(AF041468) ribosomal protein L1 [Guillardia theta]
Length = 234
Score = 86.2 bits (210), Expect = 3e-16
Identities = 67/212 (31%), Positives = 106/212 (49%), Gaps = 13/212 (6%)
Query: 10 KIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIA 69
K +EA+ K A + F +S E + LK +D K + + + +VLP G GK ++IAVIA
Sbjct: 21 KAIEALNLLKDTATAK-FVESAEAHIALK-LDTKYADQQLRTTLVLPKGTGKKIRIAVIA 78
Query: 70 DGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
+G A A G D+ S +L + K +D IA +MP I + LGK LG
Sbjct: 79 EGEKATEAINAGADLAGSTDLVQ------DIMKGMLDFDRLIATPDMMPLIAK-LGKVLG 131
Query: 130 PRNKMPVVVPPTM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETV 187
PR MP T+ S+++ +E+ KK + + + +VH G S ++ N+E V
Sbjct: 132 PRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAV 191
Query: 188 LNAIIGKLERG--ESQIKSVYVKTTMGPAVKV 217
+I G KS Y+ +TMGP++++
Sbjct: 192 QESIDKNRPAGVKGKYWKSFYICSTMGPSIQL 223
>pir||R5BS1 ribosomal protein L1 - Bacillus stearothermophilus
Length = 232
Score = 85.8 bits (209), Expect = 4e-16
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 18/219 (8%)
Query: 7 DRQK---IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR K I EA++ K + F +VEVA L +D K+ + + + VVLPHG GK
Sbjct: 15 DRSKAYPIAEAIELVK-KTNVAKFDATVEVAFRL-GVDPKKADQQIRGAVVLPHGTGKVA 72
Query: 64 KIAVIADGAVAEAARRLGLDVISSAE-LEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
++ V A G A+ A G D + E + +I Q +D +A +M ++G+
Sbjct: 73 RVLVFAKGEKAKEAEAAGADYVGDTEYINKIQQG-------WFDFDVVVATPDMMGEVGK 125
Query: 123 YLGKYLGPRNKMPVVVPPTMS-NLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEI 180
LG+ LGP+ MP T++ ++ V+++K V ++ +H P+G +E++
Sbjct: 126 -LGRILGPKGLMPDPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKL 184
Query: 181 AENIETVLNAIIGKLERGE--SQIKSVYVKTTMGPAVKV 217
AEN V A+I + +K+V + +TMGP +KV
Sbjct: 185 AENFAAVYEALIKAKPAAAKGTYVKNVTITSTMGPGIKV 223
>sp|P36248|RL1_CGDAB 50S RIBOSOMAL PROTEIN L1 >gi|144457|gb|AAA23106.1| (M94319)
ribosomal protein L1 [Liberibacter asiaticus]
>gi|739024|prf||2002224C ribosomal protein L1 [Citrus
greening disease-associated bacterium]
Length = 232
Score = 85.8 bits (209), Expect = 4e-16
Identities = 63/210 (30%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 13 EAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGA 72
+AV K RA R F ++VE+A+NL ID + + V +P+G G +V++AV A +
Sbjct: 26 DAVVMLKERATAR-FDETVEIAMNL-GIDPRHANQMVRGVVTMPNGTGVNVRVAVFATSS 83
Query: 73 VAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRN 132
A+ AR G D++ +L EI + + +D IA +MP +GR LG+ LGPR
Sbjct: 84 KADEAREAGADIVGGEDLFEIVKGGQ------IDFDRCIATPDMMPLVGR-LGRILGPRG 136
Query: 133 KMPVVVPPTMSN--LEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
MP + T++ + E V + + ++HA +G +++I EN+ ++A
Sbjct: 137 IMPNLRVGTVTTDVATAVRESKSGAVDFRSEKAGIIHAGIGKVSFENKKIEENVLAFVSA 196
Query: 191 II---GKLERGESQIKSVYVKTTMGPAVKV 217
++ + +G+ +K V + +TMG +KV
Sbjct: 197 VVKAKPSVAKGD-YVKRVTLSSTMGCGIKV 225
>sp|P04447|RL1_BACST 50S RIBOSOMAL PROTEIN L1
Length = 233
Score = 85.8 bits (209), Expect = 4e-16
Identities = 66/219 (30%), Positives = 110/219 (50%), Gaps = 18/219 (8%)
Query: 7 DRQK---IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR K I EA++ K + F +VEVA L +D K+ + + + VVLPHG GK
Sbjct: 16 DRSKAYPIAEAIELVK-KTNVAKFDATVEVAFRL-GVDPKKADQQIRGAVVLPHGTGKVA 73
Query: 64 KIAVIADGAVAEAARRLGLDVISSAE-LEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGR 122
++ V A G A+ A G D + E + +I Q +D +A +M ++G+
Sbjct: 74 RVLVFAKGEKAKEAEAAGADYVGDTEYINKIQQG-------WFDFDVVVATPDMMGEVGK 126
Query: 123 YLGKYLGPRNKMPVVVPPTMS-NLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEI 180
LG+ LGP+ MP T++ ++ V+++K V ++ +H P+G +E++
Sbjct: 127 -LGRILGPKGLMPDPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKL 185
Query: 181 AENIETVLNAIIGKLERGE--SQIKSVYVKTTMGPAVKV 217
AEN V A+I + +K+V + +TMGP +KV
Sbjct: 186 AENFAAVYEALIKAKPAAAKGTYVKNVTITSTMGPGIKV 224
>pir||E81235 50S ribosomal protein L1 NMB0128 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225345|gb|AAF40587.1| (AE002371) 50S ribosomal
protein L1 [Neisseria meningitidis MC58]
>gi|7378917|emb|CAB83460.1| (AL162752) 50S ribosomal
protein L1 [Neisseria meningitidis Z2491]
Length = 231
Score = 85.4 bits (208), Expect = 5e-16
Identities = 68/214 (31%), Positives = 112/214 (51%), Gaps = 21/214 (9%)
Query: 14 AVKEAKA---RAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIAD 70
A+ EA A +A F +SV+V+ NL +D ++ + + VVLP G GK ++AV
Sbjct: 22 AIDEAIALVKKAATAKFDESVDVSFNL-GVDPRKSDQVIRGSVVLPKGTGKITRVAVFTQ 80
Query: 71 GAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
GA AEAA+ G D++ E++A + +D IA M +G+ LG LGP
Sbjct: 81 GANAEAAKEAGADIVG---FEDLAAEIKAGN---LNFDVVIASPDAMRIVGQ-LGTILGP 133
Query: 131 RNKMPVVVPPTMSNLEP-IVEKLK--KTVRIQLKNNP--VVHAPVGTEKMSDEEIAENIE 185
R MP P + + P + E +K K ++Q + + +VHA +G ++ ++ EN +
Sbjct: 134 RGLMP---NPKVGTVTPNVAEAVKNAKAGQVQYRTDKAGIVHATIGRASFAEADLKENFD 190
Query: 186 TVLNAII-GKLERGESQ-IKSVYVKTTMGPAVKV 217
+L+AI+ K + Q +K V V +TMG ++V
Sbjct: 191 ALLDAIVKAKPAAAKGQYLKKVAVSSTMGLGIRV 224
>gi|11467548 50S ribosomal protein L1 [Odontella sinensis]
>gi|1350624|sp|P49544|RK1_ODOSI CHLOROPLAST 50S
RIBOSOMAL PROTEIN L1 >gi|7440574|pir||S78353 ribosomal
protein L1, chloroplast - Odontella sinensis chloroplast
>gi|1185243|emb|CAA91726.1| (Z67753) 50S ribosomal
protein L1 [Odontella sinensis]
Length = 230
Score = 84.7 bits (206), Expect = 8e-16
Identities = 62/196 (31%), Positives = 99/196 (49%), Gaps = 14/196 (7%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
FT++VE+ NL +ID K + + + V LPHG GK + IAV+ + + AR G D +
Sbjct: 38 FTETVELHANL-NIDPKYADQQLRTTVTLPHGIGKTINIAVLTNDSNFTEAREAGADRVG 96
Query: 87 SAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-N 144
S +L EEI+Q +D IA +MPK+ + LG+ LGP+ MP T+S
Sbjct: 97 SDDLIEEISQG-------NISFDLLIATPDMMPKLAK-LGRVLGPKGLMPSPKSGTVSTT 148
Query: 145 LEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERG--ESQ 201
L + + KK + VVH G + ++ EN+ + +I G
Sbjct: 149 LTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKY 208
Query: 202 IKSVYVKTTMGPAVKV 217
KS+++ TTMGP++++
Sbjct: 209 FKSLFICTTMGPSIQL 224
>emb|CAB77423.1| (AL160431) 50S ribosomal protein L1 [Streptomyces coelicolor A3(2)]
Length = 241
Score = 84.3 bits (205), Expect = 1e-15
Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 7 DRQKI---VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
DR K+ +EAV+ AK + + F +VEVA L +D ++ + + V LPHG GK
Sbjct: 16 DRDKLYAPLEAVRLAKETSTSK-FDGTVEVAFRL-GVDPRKADQMVRGTVNLPHGTGKTA 73
Query: 64 KIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRY 123
++ V A G AEAA G D++ S EL + + K +D +A LM K+GR
Sbjct: 74 RVLVFATGDRAEAATAAGADIVGSDELID------EVSKGRLDFDAVVATPDLMGKVGR- 126
Query: 124 LGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVR-----IQLKNNPVVHAPVGTEKMSDE 178
LG+ LGPR MP P + P V K ++ ++ + +H +G D
Sbjct: 127 LGRVLGPRGLMP---NPKTGTVTPDVAKAVNDIKGGKIEFRVDKHSNLHFIIGKTSFDDT 183
Query: 179 EIAENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAV 215
++ EN L I+ +L+ ++ IK + TTMGP +
Sbjct: 184 KLVENYGAALEEIL-RLKPSAAKGRYIKKAALSTTMGPGI 222
>emb|CAA54255.1| (X76932) ribosomal protein L1 [Spinacia oleracea]
Length = 352
Score = 84.3 bits (205), Expect = 1e-15
Identities = 58/195 (29%), Positives = 98/195 (49%), Gaps = 12/195 (6%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F ++ E L +ID K + + + V LP G GK VKIAV+A G + A+ G D++
Sbjct: 152 FVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVG 210
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMS-NL 145
EL E Q + +D IA + +M K+ LG+ LGPR MP T++ N+
Sbjct: 211 GEELIE------QIKGGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNV 263
Query: 146 EPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQI-- 202
VE+ KK V ++ +VH P G +E++ N+ + ++ G +
Sbjct: 264 AQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYW 323
Query: 203 KSVYVKTTMGPAVKV 217
KS ++ ++MGP++++
Sbjct: 324 KSAHISSSMGPSIRL 338
>emb|CAA62364.1| (X90855) L1 protein [Arabidopsis thaliana]
Length = 346
Score = 83.1 bits (202), Expect = 2e-15
Identities = 62/208 (29%), Positives = 104/208 (49%), Gaps = 13/208 (6%)
Query: 14 AVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAV 73
A+ K A R F +SVE L +ID K + + + V LP G G+ V +AV+A G
Sbjct: 134 AISLLKQTANTR-FVESVEAHFRL-NIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEK 191
Query: 74 AEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNK 133
+ A+ G D++ S +L E Q + ++D IA +M K+ LGK LGPR
Sbjct: 192 VDEAKSAGADIVGSDDLIE------QIKGGFMEFDKLIASPDMMVKVAG-LGKILGPRGL 244
Query: 134 MPVVVPPTM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAI 191
MP T+ +N+ +E+ KK V + +VH P G ++E++ N + ++
Sbjct: 245 MPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSV 304
Query: 192 IGKLERGESQI--KSVYVKTTMGPAVKV 217
+G + KS ++ ++MGP++K+
Sbjct: 305 ETNKPKGAKGVYWKSAHICSSMGPSIKL 332
>pir||T49190 ribosomal protein L1-like protein - Arabidopsis thaliana
>gi|7573332|emb|CAB87802.1| (AL163818) chloroplast
ribosomal L1-like protein [Arabidopsis thaliana]
Length = 346
Score = 83.1 bits (202), Expect = 2e-15
Identities = 62/208 (29%), Positives = 104/208 (49%), Gaps = 13/208 (6%)
Query: 14 AVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAV 73
A+ K A R F +SVE L +ID K + + + V LP G G+ V +AV+A G
Sbjct: 134 AISLLKQTANTR-FVESVEAHFRL-NIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEK 191
Query: 74 AEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNK 133
+ A+ G D++ S +L E Q + ++D IA +M K+ LGK LGPR
Sbjct: 192 VDEAKSAGADIVGSDDLIE------QIKGGFMEFDKLIASPDMMVKVAG-LGKILGPRGL 244
Query: 134 MPVVVPPTM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAI 191
MP T+ +N+ +E+ KK V + +VH P G ++E++ N + ++
Sbjct: 245 MPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSV 304
Query: 192 IGKLERGESQI--KSVYVKTTMGPAVKV 217
+G + KS ++ ++MGP++K+
Sbjct: 305 ETNKPKGAKGVYWKSAHICSSMGPSIKL 332
>pir||F81392 50S ribosomal protein L1 Cj0475 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967946|emb|CAB75113.1|
(AL139075) 50S ribosomal protein L1 [Campylobacter
jejuni]
Length = 233
Score = 82.3 bits (200), Expect = 4e-15
Identities = 60/201 (29%), Positives = 103/201 (50%), Gaps = 14/201 (6%)
Query: 23 KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGL 82
K F ++VE+A+ L ++D + + + VVLP G GK V++AVIA A A+ A+ G
Sbjct: 34 KSAKFDETVEIALKL-NVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGA 92
Query: 83 DVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKM--PVVVPP 140
D++ S +L E + +K +D IA LM +G+ +G+ LGP+ M P
Sbjct: 93 DIVGSDDLVE------EIQKGNMNFDVLIATPNLMGLVGK-VGRILGPKGLMPNPKTGTV 145
Query: 141 TMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGES 200
TM + + V ++ +HA +G S E++ +N+ T + A I K + +
Sbjct: 146 TMDVAQAVNNAKSGQVNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKA-INKHKPAAA 204
Query: 201 Q---IKSVYVKTTMGPAVKVK 218
+ IK+ + TM P+VK++
Sbjct: 205 KGRYIKNAALSLTMSPSVKLE 225
>sp|P57149|RL1_BUCAI 50S RIBOSOMAL PROTEIN L1 >gi|10038729|dbj|BAB12764.1| (AP001118)
50S ribosomal protein L1 [Buchnera sp. APS]
Length = 231
Score = 81.9 bits (199), Expect = 5e-15
Identities = 60/196 (30%), Positives = 99/196 (49%), Gaps = 14/196 (7%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F +S+++A+NL I+ K+ + + VLP+G G+ +++AV G A+ G ++I
Sbjct: 38 FNESIDIAINL-GINSKKSDQNIRSSTVLPNGIGRSIRVAVFTQGDNIAIAKDAGAELIG 96
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLE 146
+L E + +K +D IA M KI LG+ LGPRN MP T++
Sbjct: 97 MEDLSE------KIKKEGVDFDVVIATPDAM-KIVTQLGQILGPRNLMPNTKLGTITTNI 149
Query: 147 PIVEKLKKTVRIQLKN--NPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQ--- 201
K KT +++ +N N ++HA +G EI EN+ L + I K + +S+
Sbjct: 150 AEAIKNAKTGQVRYRNDKNGIIHATIGRINFHKNEIKENLNVFLES-IKKAKPPQSKGIY 208
Query: 202 IKSVYVKTTMGPAVKV 217
IK + + TTMG + V
Sbjct: 209 IKKIVLSTTMGVGLMV 224
>pir||G82876 ribosomal protein L1 UU540 [imported] - Ureaplasma urealyticum
>gi|6899545|gb|AAF30953.1|AE002153_1 (AE002153)
ribosomal protein L1 [Ureaplasma urealyticum]
Length = 229
Score = 81.1 bits (197), Expect = 9e-15
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 7 DRQK---IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDV 63
D+QK + +A+K A+ ++ + F S+ +A+ L ++D + E + + + LP+G GK+V
Sbjct: 16 DKQKAYPLFDAIKLAQEKSITK-FDGSINIAIKL-NLDTTKVEQQLRGSISLPNGNGKNV 73
Query: 64 KIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRY 123
++ V+++ E A +G D A+ + K+ + D I +MP + +
Sbjct: 74 RVLVLSEDITKEEAASVGADYFGGADYIQ------NIEKMLNQIDVIITNQKMMPLLAK- 126
Query: 124 LGKYLGPRNKMPVVVPPTMSN--LEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIA 181
LGK LGPR MP T++N L+ + E + + + +H +G +I
Sbjct: 127 LGKVLGPRGLMPNPKIGTVTNDVLKAVEEFKRGRIEYRTDTYGNIHMSIGRVSFETTKIE 186
Query: 182 ENIETVLNAIIGK---LERGESQIKSVYVKTTMGPAVKV 217
EN +LN I K +G+ I+++ V TMGP +KV
Sbjct: 187 ENANALLNLIKSKKPATVKGQ-YIQNIAVSPTMGPGIKV 224
>sp|Q9Z9A3|RL1_CHLPN 50S RIBOSOMAL PROTEIN L1 >gi|7440579|pir||A72122 ribosomal protein
L1 CP0697 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) >gi|4376336|gb|AAD18231.1| (AE001593)
L1 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
>gi|7189611|gb|AAF38505.1| (AE002228) ribosomal protein
L1 [Chlamydophila pneumoniae AR39]
>gi|8978451|dbj|BAA98288.1| (AP002545) L1 ribosomal
protein [Chlamydophila pneumoniae J138]
Length = 232
Score = 80.4 bits (195), Expect = 2e-14
Identities = 64/199 (32%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Query: 24 PRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLD 83
P F Q+V+V++ L ID K+ + + + V LP+G GK ++I V A G + A G D
Sbjct: 35 PVRFDQTVDVSIKL-GIDPKKSDQQIRGAVFLPNGTGKTLRILVFASGNKVKEAVEAGAD 93
Query: 84 VISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTM- 142
+ S +L E +S ++D +A +M ++G+ LGK LGPRN MP T+
Sbjct: 94 FMGSDDLVEKIKSG------WLEFDVAVATPDMMREVGK-LGKVLGPRNLMPTPKTGTVT 146
Query: 143 SNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDE--EIAENIETVLNAII-GKLERGE 199
+++ + +L+K +I+ K + VG K+S E +I ENIE + +A+I K +
Sbjct: 147 TDVAKAISELRKG-KIEFKADRAGVCNVGVGKLSFESSQIKENIEALSSALIKAKPPAAK 205
Query: 200 SQ-IKSVYVKTTMGPAVKV 217
Q + S + +TMGP + +
Sbjct: 206 GQYLVSFTISSTMGPGISI 224
>gb|AAF55120.1| (AE003707) CG3843 gene product [Drosophila melanogaster]
Length = 216
Score = 80.4 bits (195), Expect = 2e-14
Identities = 58/209 (27%), Positives = 105/209 (49%), Gaps = 9/209 (4%)
Query: 8 RQKIVEAVKEA--KARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKI 65
R I AVK ++AK + ++VE+ + L+D D + + RF V+L H +K+
Sbjct: 7 RDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCK-RFHGSVLLHHLAVPQLKV 65
Query: 66 AVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLG 125
V D A+ +G+D + L+++ + P+ +KL+K YD F+A ++ +I R LG
Sbjct: 66 CVFGDQEHCYKAKAIGVDCLDVEALKKLNKDPKLTKKLSKAYDVFLASESIIKQIPRLLG 125
Query: 126 KYLGPRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAEN 183
L K P+ +MS+ I+ KK +K + VG M EE+A N
Sbjct: 126 PGLTNAGKFLTPLARGESMSSKIKILSTKKK----HMKRMECLSVNVGHVGMHPEELARN 181
Query: 184 IETVLNAIIGKLERGESQIKSVYVKTTMG 212
I +N ++ L+ ++S+++K+++G
Sbjct: 182 IAISINFLVSLLKDNWQNVRSLHIKSSLG 210
>sp|Q06797|RL1_BACSU 50S RIBOSOMAL PROTEIN L1 (BL1) >gi|7440573|pir||E69694 ribosomal
protein L1 - Bacillus subtilis
>gi|2632370|emb|CAB11879.1| (Z99104) ribosomal protein
L1 (BL1) [Bacillus subtilis]
Length = 232
Score = 79.2 bits (192), Expect = 4e-14
Identities = 65/214 (30%), Positives = 104/214 (48%), Gaps = 23/214 (10%)
Query: 15 VKEAKARAKPRN---FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
V EA A K N F +VEVA L +D + + + VVLP+G GK ++ V A G
Sbjct: 23 VSEAVALVKKTNTAKFDATVEVAFRL-GVDPSKNHQQIRGAVVLPNGTGKTQRVLVFAKG 81
Query: 72 AVAEAARRLGLDVISSAE-LEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
A+ A G D + + + +I Q +D +A +M ++G+ +G+ LGP
Sbjct: 82 EKAKEAEAAGADFVGDTDYINKIQQG-------WFDFDVIVATPDMMGEVGK-IGRVLGP 133
Query: 131 RNKMPVVVPPTMS-NLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVL 188
+ MP T++ +E + ++K V ++ +H P+G DE++ EN T+
Sbjct: 134 KGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMY 193
Query: 189 NAIIGKLERGESQIKSVYVK-----TTMGPAVKV 217
+ I L+ + K VYVK +TMGP VKV
Sbjct: 194 DTI---LKAKPAAAKGVYVKNVAVTSTMGPGVKV 224
>gi|11465804 50S ribosomal protein L1 [Porphyra purpurea]
>gi|1710416|sp|P51338|RK1_PORPU CHLOROPLAST 50S
RIBOSOMAL PROTEIN L1 >gi|2147041|pir||S73259 ribosomal
protein L1, chloroplast - red alga (Porphyra purpurea)
chloroplast >gi|1276804|gb|AAC08224.1| (U38804) 50S
ribosomal protein L1 [Porphyra purpurea]
Length = 229
Score = 79.2 bits (192), Expect = 4e-14
Identities = 58/209 (27%), Positives = 105/209 (49%), Gaps = 13/209 (6%)
Query: 13 EAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGA 72
EAV +A + + F ++ E ++L ++ K + + + V+LP G GK VK+AVIA G
Sbjct: 24 EAVTILRATSNAK-FKETAEAHISL-GLNPKYADQQLRATVILPKGTGKLVKVAVIAKGE 81
Query: 73 VAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRN 132
A G D+ S EL + + K +D IA +MP I + LG+ LGPR
Sbjct: 82 KLTEAMNAGADISGSEELID------EISKGRLDFDKLIATPDIMPLIAK-LGRVLGPRG 134
Query: 133 KMPVVVPPTMS-NLEPIVEKLK-KTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNA 190
MP T++ ++ + + K V ++ ++H P G +E++ N++T+ ++
Sbjct: 135 LMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDS 194
Query: 191 IIGKLERGE--SQIKSVYVKTTMGPAVKV 217
I G K+ ++ +TMGP++++
Sbjct: 195 IDKNKPSGSKGKYWKTFFLSSTMGPSIQI 223
>sp|P56029|RL1_HELPY 50S RIBOSOMAL PROTEIN L1 >gi|7440572|pir||A64670 ribosomal protein
L1 - Helicobacter pylori (strain 26695)
>gi|2314363|gb|AAD08247.1| (AE000626) ribosomal protein
L1 (rpl1) [Helicobacter pylori 26695]
Length = 234
Score = 79.2 bits (192), Expect = 4e-14
Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 2 SRMPFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGK 61
S++ D+ VE E F ++VEVA+ L +D + + + VVLPHG GK
Sbjct: 14 SKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRL-GVDPRHADQMVRGAVVLPHGTGK 72
Query: 62 DVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIG 121
V++AV A + A+ G DV+ +L E ++ R +D IA +M +G
Sbjct: 73 KVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGR------IDFDMVIATPDMMAVVG 126
Query: 122 RYLGKYLGPRNKMPVVVPPTMS-NLEPIVEKLKK---TVRIQLKNNPVVHAPVGTEKMSD 177
+ +G+ LGP+ MP T++ ++ V K R+ K N VHAP+G +
Sbjct: 127 K-VGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGN--VHAPIGKASFPE 183
Query: 178 EEIAENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
E+I EN+ ++ I +L+ ++ I++ + TM P+V +
Sbjct: 184 EKIKENMLELVKT-INRLKPSSAKGKYIRNAALSLTMSPSVSL 225
>emb|CAB65902.1| (AJ270980) 60s ribosomal protein L10A [Caenorhabditis elegans]
Length = 186
Score = 78.8 bits (191), Expect = 5e-14
Identities = 49/172 (28%), Positives = 89/172 (51%), Gaps = 1/172 (0%)
Query: 46 ENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAK 105
+ RF + L H ++K+ V D + A + +S+ +L+++ + + +KLAK
Sbjct: 15 DKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAK 74
Query: 106 KYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQLKNNPV 165
YD FIA L+ +I R LG L K P VV S L+ ++++ TV+ Q+K
Sbjct: 75 SYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGES-LQSKSDEIRATVKFQMKKVLC 133
Query: 166 VHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQIKSVYVKTTMGPAVKV 217
+ VG ++ EE+ NI +N ++ L++ ++S+ +K+TMG +V
Sbjct: 134 LSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRV 185
>pir||E82531 50S ribosomal protein L1 XF2636 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107867|gb|AAF85433.1|AE004071_1
(AE004071) 50S ribosomal protein L1 [Xylella fastidiosa]
Length = 232
Score = 78.8 bits (191), Expect = 5e-14
Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 16/213 (7%)
Query: 11 IVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAV-IA 69
I EA+K K K + F +SV+VA+ L +D+K+ + + + +LP G G+ V++AV +
Sbjct: 22 IDEAIKILKTATKAK-FIESVDVAIRL-GVDVKKSDQQVRGSTLLPAGTGRAVRVAVFVP 79
Query: 70 DGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLG 129
GA AE A G D + +L E QA L YD IA M +G+ LG LG
Sbjct: 80 SGAKAEDALAAGADAVGMDDLAE----KMQAGDL--NYDVVIATPDAMRVVGK-LGTLLG 132
Query: 130 PRNKMPVVVPPTMSNL--EPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETV 187
PR MP T+S E + VR + ++H +G DE + N++ +
Sbjct: 133 PRGLMPNPKVGTVSQNPGEAVKNAKSGQVRYRADKAGIIHCVIGKVNFDDEALKLNLQAL 192
Query: 188 LNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
L +I K++ S+ ++ V + +TMGP V +
Sbjct: 193 LVDLI-KIKPTASKGAYLQKVSLSSTMGPGVMI 224
>gi|11465492 unknown; 50S ribosomal protein L1 [Cyanidium caldarium]
>gi|6466395|gb|AAF12977.1|AF022186_100 (AF022186)
unknown; 50S ribosomal protein L1 [Cyanidium caldarium]
Length = 240
Score = 78.4 bits (190), Expect = 6e-14
Identities = 60/211 (28%), Positives = 108/211 (50%), Gaps = 15/211 (7%)
Query: 12 VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
+EA+ K+ K + F+++ EV L D++ K + + + VVLP G GK KIAVI +
Sbjct: 25 IEAINLLKSGPKAK-FSETFEVHCCL-DLNTKYSDQQLRASVVLPKGTGKRTKIAVITNE 82
Query: 72 AVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
A + G+D++ S +L E IA ++D + +MP I + +GK LGP
Sbjct: 83 AEVNKIKNFGVDIVGSKDLVESIANG-------FLEFDQLLTTPDMMPVIAK-VGKILGP 134
Query: 131 RNKMPVVVPPTM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVL 188
R MP ++ S++ +++ KK + + + +VH+ +G + E++ N+ +
Sbjct: 135 RGLMPSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIK 194
Query: 189 NAIIGKLERGE--SQIKSVYVKTTMGPAVKV 217
+I G K++Y+ TTM PA+K+
Sbjct: 195 KSIDQNRPNGAKGKYWKNMYLCTTMSPAIKI 225
>gb|AAF36508.1|AF130462_5 (AF130462) 50S ribosomal protein L1 [Corynebacterium glutamicum]
Length = 236
Score = 78.4 bits (190), Expect = 6e-14
Identities = 64/202 (31%), Positives = 101/202 (49%), Gaps = 22/202 (10%)
Query: 25 RNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDV 84
+N+ S++VA+ L +D ++ + + V LP+G GK V++AV A G A A G D
Sbjct: 36 KNYDASIDVAIRL-GVDPRKADQLVRGTVSLPNGTGKTVRVAVFAQGEKATEAEAAGADF 94
Query: 85 ISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSN 144
+ + EL E Q +D IA M KIGR + + LGPR MP T++N
Sbjct: 95 VGTDELVEKIQGG------WTDFDVAIATPDQMAKIGR-IARVLGPRGLMPNPKTGTVTN 147
Query: 145 -LEPIVEKLKK---TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGES 200
+ +E++K + R+ +N +HA +G +++AEN +L+ II S
Sbjct: 148 DVAKAIEEVKGGKISFRVDKASN--LHAAIGKASFDAKKLAENYGALLDEII---RIKPS 202
Query: 201 QIKSVYVK-----TTMGPAVKV 217
K +YVK +T GP V+V
Sbjct: 203 SAKGIYVKRVTLSSTTGPGVEV 224
>sp|P36256|RL1_STRGR 50S RIBOSOMAL PROTEIN L1 >gi|322287|pir||S32236 ribosomal protein
L1 - Streptomyces griseus >gi|1333827|emb|CAA51298.1|
(X72787) ribosomal protein L1 [Streptomyces griseus]
>gi|2447005|dbj|BAA22446.1| (D87846) ribosomal protein
L1 [Streptomyces griseus]
Length = 240
Score = 77.3 bits (187), Expect = 1e-13
Identities = 65/213 (30%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 12 VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
+EAV+ AK + + F +VEVA L +D ++ + + V LPHG GK ++ V A G
Sbjct: 23 LEAVRLAKETSSTK-FDGTVEVAFAL-GVDPRKADQMVRGTVNLPHGTGKTARVLVFATG 80
Query: 72 AVAEAARRLGLDVISSAEL-EEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGP 130
A AA G D++ + EL +E+A K +D +A LM K+GR LG+ LGP
Sbjct: 81 DRAAAAEAAGADIVGADELIDEVA-------KGRLDFDAVVATPDLMGKVGR-LGRVLGP 132
Query: 131 RNKMPVVVPPTMSNLEPIVEKLKKTVR-----IQLKNNPVVHAPVGTEKMSDEEIAENIE 185
R MP P + P V K ++ ++ + +H +G + ++ EN
Sbjct: 133 RGLMP---NPKTGTVTPDVVKAVNDIKGGKIEFRVDKHSNLHFIIGKVSFDETKLVENYA 189
Query: 186 TVLNAIIGKLERGESQ---IKSVYVKTTMGPAV 215
L I+ +L+ ++ IK + TTMGP +
Sbjct: 190 AALEEIL-RLKPSAAKGRYIKKATLATTMGPGI 221
>sp|P36236|RL1_SYNY3 50S RIBOSOMAL PROTEIN L1 >gi|1075627|pir||D49316 ribosomal protein
L1 - Synechocystis sp. (strain PCC 6803)
>gi|452793|emb|CAA51492.1| (X73005) ribosomal protein L1
[Synechocystis PCC6803] >gi|1652497|dbj|BAA17418.1|
(D90906) 50S ribosomal protein L1 [Synechocystis sp.]
Length = 238
Score = 76.9 bits (186), Expect = 2e-13
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 12 VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
+EA++ K A + F ++ E + L ID K + + + V LP G G+ V++AV+A G
Sbjct: 25 LEAMELLKETATAK-FDETAEAHIRL-GIDPKYSDQQIRTTVSLPKGTGQTVRVAVLARG 82
Query: 72 AVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPR 131
+ A G D+ S EL E + +K +D IA +MPKI R LGK LGPR
Sbjct: 83 EKVKEATDAGADIAGSEELIE------EIQKGMMDFDVLIATPDMMPKIAR-LGKQLGPR 135
Query: 132 NKMPVVVPPTM-SNLEPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLN 189
MP T+ ++L V + K + + +VH G S +++ N++ +
Sbjct: 136 GLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQE 195
Query: 190 AIIGKLERGESQ--IKSVYVKTTMGPAVKV 217
I G ++V+V ++MGP++ V
Sbjct: 196 TIDRNRPSGAKGRFWRTVFVSSSMGPSIPV 225
>gi|11467315 ribosomal protein L1 [Cyanophora paradoxa]
>gi|1350623|sp|P48125|RK1_CYAPA CYANELLE 50S RIBOSOMAL
PROTEIN L1 >gi|7440578|pir||T06860 ribosomal protein L1
- Cyanophora paradoxa cyanelle
>gi|1016116|gb|AAA81203.1| (U30821) ribosomal protein L1
[Cyanophora paradoxa]
Length = 237
Score = 76.5 bits (185), Expect = 2e-13
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 21/218 (9%)
Query: 5 PFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVK 64
P + ++++ + AK F ++VEV L ID K + + + V LP+G G+ ++
Sbjct: 22 PLEAIQLLKQISTAK-------FIETVEVHCRL-GIDPKYNDQQLRATVTLPNGTGQTLR 73
Query: 65 IAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYL 124
+AVI G A G D++ + EL + Q+ R +D IA +MP++ + L
Sbjct: 74 VAVITRGEKINEASTAGADLVGAEELIDEIQNGR------LDFDCLIATPDMMPQVAK-L 126
Query: 125 GKYLGPRNKMPVVVPPTMS-NLEPIVEKLKKTVRIQLKNN--PVVHAPVGTEKMSDEEIA 181
G+ LGPR MP T++ +L + K +++ +N+ +VH G S+E +
Sbjct: 127 GRVLGPRGLMPSPKGGTVTFDLAQAINDF-KAGKLEFRNDRTGIVHVLFGKANFSEEALL 185
Query: 182 ENIETVLNAIIGKLERG--ESQIKSVYVKTTMGPAVKV 217
N++ V A+ G KS+Y+ +TM P+++V
Sbjct: 186 GNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEV 223
>pir||B81685 ribosomal protein L1 TC0592 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190630|gb|AAF39424.1| (AE002328)
ribosomal protein L1 [Chlamydia muridarum]
Length = 232
Score = 76.5 bits (185), Expect = 2e-13
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 16/217 (7%)
Query: 5 PFDRQKIVEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVK 64
P+ + ++ +K+ A F Q+V+V+V L ID ++ + + + V LPHG GK ++
Sbjct: 20 PYSLGEAIDILKQCPAV----RFDQTVDVSVKL-GIDPRKSDQQIRGSVSLPHGTGKVLR 74
Query: 65 IAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYL 124
I V A G A A G D + S +L E + + +D +A +M ++G+ L
Sbjct: 75 ILVFAAGDKAAEAIEAGADFVGSDDLVE------KIKGGWVDFDVAVATPDMMREVGK-L 127
Query: 125 GKYLGPRNKMPVVVPPTMSN--LEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAE 182
GK LGPRN MP T++ ++ I E K + + V + V +I E
Sbjct: 128 GKVLGPRNLMPTPKSGTVTTDVVKAIAELRKGKIEFKADRAGVCNVGVAKLSFDSAQIKE 187
Query: 183 NIETVLNAII-GKLERGESQ-IKSVYVKTTMGPAVKV 217
NIE + A++ K + Q + + + +TMGP V V
Sbjct: 188 NIEALCAALVKAKPATAKGQYLVNFTISSTMGPGVTV 224
>sp|O84320|RL1_CHLTR 50S RIBOSOMAL PROTEIN L1 >gi|7440576|pir||C71530 probable L1
ribosomal protein - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328735|gb|AAC67911.1| (AE001304) L1
Ribosomal Protein [Chlamydia trachomatis]
Length = 232
Score = 75.3 bits (182), Expect = 5e-13
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 14/196 (7%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F Q+V+V+V L ID ++ + + + V LPHG GK ++I V A G A A G D +
Sbjct: 38 FDQTVDVSVKL-GIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVG 96
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTM-SNL 145
S +L E + + +D +A +M ++G+ LGK LGPRN MP T+ +++
Sbjct: 97 SDDLVE------KIKGGWVDFDVAVATPDMMREVGK-LGKVLGPRNLMPTPKAGTVTTDV 149
Query: 146 EPIVEKLKKTVRIQLKNNPVVHAPVGTEKMS--DEEIAENIETVLNAII-GKLERGESQ- 201
V +L+K +I+ K + VG K+S +I EN+E + A++ K + Q
Sbjct: 150 VKTVAELRKG-KIEFKADRAGVCNVGVAKLSFDSAQIKENVEALCAALVKAKPATAKGQY 208
Query: 202 IKSVYVKTTMGPAVKV 217
+ + + +TMGP V V
Sbjct: 209 LVNFTISSTMGPGVTV 224
>sp|Q9ZK21|RL1_HELPJ 50S RIBOSOMAL PROTEIN L1 >gi|7440571|pir||E71846 ribosomal protein
L1 - Helicobacter pylori (strain J99)
>gi|4155721|gb|AAD06702.1| (AE001540) 50S RIBOSOMAL
PROTEIN L1 [Helicobacter pylori J99]
Length = 234
Score = 74.9 bits (181), Expect = 7e-13
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 12 VEAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADG 71
VE VK A AK F ++VEVA+ L +D + + + VVL HG GK V++AV A
Sbjct: 28 VEVVKSL-ASAK---FDETVEVALRL-GVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKD 82
Query: 72 AVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPR 131
+ A+ G DV+ +L E ++ R +D IA +M +G+ +G+ LGP+
Sbjct: 83 IKQDEAKNAGADVVGGDDLAEEIKNGR------IDFDMVIATPDMMAVVGK-VGRILGPK 135
Query: 132 NKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLN 189
M P TM + + V ++ VHAP+G +E+I EN+ ++
Sbjct: 136 GLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVK 195
Query: 190 AIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
I +L+ ++ I++ + TM P+V +
Sbjct: 196 T-INRLKPSSAKGKYIRNAALSLTMSPSVNL 225
>sp|P96932|RL1_MYCTU 50S RIBOSOMAL PROTEIN L1 >gi|7440577|pir||F70613 probable ribosomal
protein L1 rplA - Mycobacterium tuberculosis (strain
H37RV) >gi|1877379|emb|CAB07100.1| (Z92772) rplA
[Mycobacterium tuberculosis]
Length = 235
Score = 74.1 bits (179), Expect = 1e-12
Identities = 62/218 (28%), Positives = 107/218 (48%), Gaps = 16/218 (7%)
Query: 7 DRQKIVEAVKEAKARAKPRNFTQ--SVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVK 64
DR + ++ AK + + Q +VEVA+ L +D ++ + + V LPHG GK +
Sbjct: 16 DRTNLYTPLQAAKLAKETSSTKQDATVEVAIRL-GVDPRKADQMVRGTVNLPHGTGKTAR 74
Query: 65 IAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYL 124
+AV A G A+AA G DV+ S +L E Q ++D IA M K+GR +
Sbjct: 75 VAVFAVGEKADAAVAAGADVVGSDDLIERIQGG------WLEFDAAIATPDQMAKVGR-I 127
Query: 125 GKYLGPRNKMPVVVPPTM-SNLEPIVEKLK-KTVRIQLKNNPVVHAPVGTEKMSDEEIAE 182
+ LGPR MP T+ +++ V +K + ++ +H +G ++ +AE
Sbjct: 128 ARVLGPRGLMPNPKTGTVTADVAKAVADIKGGKINFRVDKQANLHFVIGKASFDEKLLAE 187
Query: 183 NIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
N ++ ++ +L+ S+ +K + V TT GP + V
Sbjct: 188 NYGAAIDEVL-RLKPSSSKGRYLKKITVSTTTGPGIPV 224
>sp|O51353|RL1_BORBU 50S RIBOSOMAL PROTEIN L1 >gi|7440585|pir||G70148 ribosomal protein
L1 (rplA) - Lyme disease spirochete
>gi|2688305|gb|AAC66773.1| (AE001145) ribosomal protein
L1 (rplA) [Borrelia burgdorferi]
Length = 226
Score = 71.0 bits (171), Expect = 1e-11
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 15/195 (7%)
Query: 27 FTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARRLGLDVIS 86
F +++++++NL +LK+ + + +VLP+ K +I V A G A+ AR G +
Sbjct: 38 FDETIDISINL---NLKK-NHTVRDTIVLPNQFMKPKRILVFAKGDRADEARAFGATYVG 93
Query: 87 SAELEEIAQSPRQARKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSN-L 145
+L +S ++D +A +M +GR LG LG R MP T++N L
Sbjct: 94 DDDLINKIKSGWD------EFDVVVATPDMMKDVGR-LGPILGKRGLMPNPKTQTVTNNL 146
Query: 146 EPIVEKLKK-TVRIQLKNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKL--ERGESQI 202
+ + LKK + N V+ G M +E+I EN E + ++ K + + I
Sbjct: 147 KDAINSLKKGRTEFRANKNGVISFSFGKSSMDNEKIKENYEEFVKEVVKKRPSDLKGAFI 206
Query: 203 KSVYVKTTMGPAVKV 217
S+Y+ +TMGP++KV
Sbjct: 207 DSIYISSTMGPSIKV 221
>gb|AAB47277.1| (U86609) ribosomal protein L1 homolog [Helicobacter pylori]
Length = 178
Score = 69.5 bits (167), Expect = 3e-11
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 13/170 (7%)
Query: 53 VVLPHGRGKDVKIAVIADGAVAEAARRLGLDVISSAELEEIAQSPRQARKLAKKYDFFIA 112
VVLPHG GK V++AV A + A+ G DV+ +L E ++ R +D IA
Sbjct: 8 VVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGR------IDFDMVIA 61
Query: 113 EAPLMPKIGRYLGKYLGPRNKM--PVVVPPTMSNLEPIVEKLKKTVRIQLKNNPVVHAPV 170
+M +G+ +G+ LGP+ M P TM + + V ++ VHAP+
Sbjct: 62 TPDMMAVVGK-VGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPI 120
Query: 171 GTEKMSDEEIAENIETVLNAIIGKLERGESQ---IKSVYVKTTMGPAVKV 217
G +E+I EN+ ++ I +L+ ++ I++ + TM P+V +
Sbjct: 121 GKASFPEEKIKENMLELVKT-INRLKPSSAKGKYIRNAALSLTMSPSVSL 169
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.134 0.362
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74333322
Number of Sequences: 2977
Number of extensions: 2996517
Number of successful extensions: 10026
Number of sequences better than 1.0e-10: 85
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 9868
Number of HSP's gapped (non-prelim): 87
length of query: 219
length of database: 189,106,746
effective HSP length: 60
effective length of query: 159
effective length of database: 153,197,526
effective search space: 24358406634
effective search space used: 24358406634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 163 (67.9 bits)