BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1168 (rpl12A) DE:LSU ribosomal protein L12A (rpl12A)
(107 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75031 lsu ribosomal protein l12a (rpl12a) PAB1168 - Pyroco... 204 2e-52
sp|O57705|RL12_PYRHO 50S RIBOSOMAL PROTEIN L12P >gi|7440751|pir|... 191 1e-48
gi|11499087 LSU ribosomal protein L12A (rpl12A) [Archaeoglobus f... 166 4e-41
sp|O52706|RL12_METTL 50S RIBOSOMAL PROTEIN L12P >gi|2895649|gb|A... 141 2e-33
sp|P54048|RL12_METJA 50S RIBOSOMAL PROTEIN L12P >gi|2119124|pir|... 140 3e-33
sp|P05394|RL12_METTH 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|7... 129 7e-30
sp|P96040|RL12_SULSO 50S RIBOSOMAL PROTEIN L12P >gi|1814430|gb|A... 124 2e-28
gb|AAK40672.1| LSU ribosomal protein L12AB (rpl12AB) [Sulfolobus... 124 2e-28
emb|CAC11502.1| (AL445064) probable 50S ribosomal protein L12 [T... 120 4e-27
sp|P08055|RL12_SULAC 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|1... 113 3e-25
prf||1406252A ribosomal A protein SacL12 [Sulfolobus acidocaldar... 113 3e-25
sp|P10623|RL12_METVA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|7... 105 9e-23
gb|AAF89101.1|AF199442_3 (AF199442) ribosomal protein L12 [Metha... 102 1e-21
sp|Q9Y9W9|RL12_AERPE 50S RIBOSOMAL PROTEIN L12P >gi|7440755|pir|... 101 1e-21
sp|P15772|RL12_HALMA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) (HMAL... 101 2e-21
sp|P41197|RL12_HALVO 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|4... 96 8e-20
sp|P05768|RL12_HALHA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) (HL20... 91 2e-18
emb|CAB57310.1| (AJ011716) 60S acidic ribosomal protein P2 [Cyan... 74 4e-13
gi|6324534 60S acidic ribosomal protein P2A (L44) (A2) (YP2alpha... 68 2e-11
pir||T37490 ribosomal protein rpa6 - fission yeast (Schizosaccha... 67 4e-11
>pir||A75031 lsu ribosomal protein l12a (rpl12a) PAB1168 - Pyrococcus abyssi
(strain Orsay) >gi|5459201|emb|CAB50687.1| (AJ248288)
LSU ribosomal protein L12A (rpl12A) [Pyrococcus abyssi]
Length = 107
Score = 204 bits (513), Expect = 2e-52
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP
Sbjct: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG
Sbjct: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
>sp|O57705|RL12_PYRHO 50S RIBOSOMAL PROTEIN L12P >gi|7440751|pir||F71216 probable
ribosomal protein L12 - Pyrococcus horikoshii
>gi|3258442|dbj|BAA31125.1| (AP000007) 111aa long
hypothetical 50S ribosomal protein L12 [Pyrococcus
horikoshii]
Length = 111
Score = 191 bits (480), Expect = 1e-48
Identities = 103/108 (95%), Positives = 105/108 (96%), Gaps = 1/108 (0%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAALLLHSVGKEINE+NLKAVLQAAGVEP+EARIKALVAALEGVNIDEVIEKAAMP
Sbjct: 4 MEYVYAALLLHSVGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEKAAMP 63
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKK-EEEKEEEVSEEEALAGLSALFG 107
VAVAAAPAAAPAEA EEKKEEEKK EEEKEEEVSEEEALAGLSALFG
Sbjct: 64 VAVAAAPAAAPAEAGGEEKKEEEKKEEEEKEEEVSEEEALAGLSALFG 111
>gi|11499087 LSU ribosomal protein L12A (rpl12A) [Archaeoglobus fulgidus]
>gi|3914668|sp|O28780|RL12_ARCFU 50S RIBOSOMAL PROTEIN
L12P >gi|7440752|pir||C69436 LSU ribosomal protein L12A
(rpl12A) homolog - Archaeoglobus fulgidus
>gi|2649066|gb|AAB89748.1| (AE000999) LSU ribosomal
protein L12A (rpl12A) [Archaeoglobus fulgidus]
Length = 106
Score = 166 bits (417), Expect = 4e-41
Identities = 88/107 (82%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAALLLHS GKEI EDN+KAVL+AAGVE DEAR+KALVAALEGVNIDE I+KAAMP
Sbjct: 1 MEYVYAALLLHSAGKEITEDNVKAVLEAAGVEVDEARVKALVAALEGVNIDEAIQKAAMP 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
+AVAAAPAAA A APAEE KEE K+EEE+EEEV EEEA+ GL ALFG
Sbjct: 61 MAVAAAPAAA-AAAPAEEAKEEAKEEEEEEEEVKEEEAIEGLGALFG 106
>sp|O52706|RL12_METTL 50S RIBOSOMAL PROTEIN L12P >gi|2895649|gb|AAC64512.1| (AF044919)
ribosomal protein L12 [Methanococcus
thermolithotrophicus]
Length = 101
Score = 141 bits (352), Expect = 2e-33
Identities = 75/107 (70%), Positives = 87/107 (81%), Gaps = 6/107 (5%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEY+YA+LLLHS GKEI ED +KAVL AAGVE ++AR+KALVAALEGV+I+E IEKAAMP
Sbjct: 1 MEYIYASLLLHSAGKEITEDAVKAVLSAAGVEVEDARVKALVAALEGVDIEEAIEKAAMP 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
VA AAAPAAAPAE P EEKKEE+K+E+ + A AGL ALFG
Sbjct: 61 VAAAAAPAAAPAEEPKEEKKEEKKEED------TTAAAAAGLGALFG 101
>sp|P54048|RL12_METJA 50S RIBOSOMAL PROTEIN L12P >gi|2119124|pir||D64363 ribosomal
protein L12 - Methanococcus jannaschii
>gi|1499306|gb|AAB98498.1| (U67500) LSU ribosomal
protein L12A (P1) [Methanococcus jannaschii]
Length = 102
Score = 140 bits (349), Expect = 3e-33
Identities = 77/107 (71%), Positives = 88/107 (81%), Gaps = 5/107 (4%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEY+YAALLLHS GKEI ED +KAVL AAGVE D+AR+KALVA LEGV+I+E I AAMP
Sbjct: 1 MEYIYAALLLHSAGKEITEDAIKAVLSAAGVEVDDARVKALVAGLEGVDIEEAIANAAMP 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
VAAAPAAA A AEEKKEEEKKEE+KEE+ + A+AGL+ALFG
Sbjct: 61 --VAAAPAAAAPAAAAEEKKEEEKKEEKKEEDTA---AVAGLAALFG 102
>sp|P05394|RL12_METTH 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|7440753|pir||H69091
ribosomal protein Lp1 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622812|gb|AAB86154.1| (AE000926) ribosomal protein
Lp1 [Methanobacterium thermoautotrophicum]
Length = 101
Score = 129 bits (321), Expect = 7e-30
Identities = 70/107 (65%), Positives = 86/107 (79%), Gaps = 6/107 (5%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEY+YAA+LLH+ GKEINE+N+K+VL+AAG E D+AR+KAL+AALE V+I+E +E
Sbjct: 1 MEYIYAAMLLHTTGKEINEENVKSVLEAAGAEVDDARVKALIAALEDVDIEEAME----T 56
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
AVAAAPAAA A A AEE EE+ EEE+EEE +EEEA AGL ALFG
Sbjct: 57 TAVAAAPAAAAAPAAAEE--AEEEAEEEEEEEEAEEEAAAGLGALFG 101
>sp|P96040|RL12_SULSO 50S RIBOSOMAL PROTEIN L12P >gi|1814430|gb|AAB99527.1| (U85262)
ribosomal protein L12 [Sulfolobus solfataricus]
Length = 106
Score = 124 bits (309), Expect = 2e-28
Identities = 69/108 (63%), Positives = 85/108 (77%), Gaps = 3/108 (2%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK-AAM 59
MEY+YA+LLLHS KEI+ED LK VL AAG+ DE R+KA+VAAL+ VNIDEV++ AAM
Sbjct: 1 MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAM 60
Query: 60 PVAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
PVAVAA P A A+ AEEKKEE+K+EE+K SEEE +GL++LFG
Sbjct: 61 PVAVAAQPQATQAQPAAEEKKEEKKEEEKKGP--SEEEIASGLASLFG 106
>gb|AAK40672.1| LSU ribosomal protein L12AB (rpl12AB) [Sulfolobus solfataricus]
Length = 106
Score = 124 bits (309), Expect = 2e-28
Identities = 69/108 (63%), Positives = 85/108 (77%), Gaps = 3/108 (2%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK-AAM 59
MEY+YA+LLLHS KEI+ED LK VL AAG+ DE R+KA+VAAL+ VNIDEV++ AAM
Sbjct: 1 MEYIYASLLLHSAKKEISEDALKNVLTAAGISVDEVRLKAVVAALKEVNIDEVLKNAAAM 60
Query: 60 PVAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
PVAVAA P A A+ AEEKKEE+K+EE+K SEEE +GL++LFG
Sbjct: 61 PVAVAAQPQATQAQPAAEEKKEEKKEEEKKGP--SEEEIASGLASLFG 106
>emb|CAC11502.1| (AL445064) probable 50S ribosomal protein L12 [Thermoplasma
acidophilum]
Length = 106
Score = 120 bits (297), Expect = 4e-27
Identities = 64/108 (59%), Positives = 83/108 (76%), Gaps = 3/108 (2%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAM- 59
MEYVY ALLLH+ GKE++E+ LK VL+ GV+ DEAR+K LV+ L+ VNIDEV++ A++
Sbjct: 1 MEYVYGALLLHAAGKEVDEEKLKKVLEDVGVQVDEARLKTLVSGLKDVNIDEVLKNASVA 60
Query: 60 PVAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
VA A APAA + +KKEE+KKEE+KE E EEEA++GLSALFG
Sbjct: 61 QVATAPAPAAEEKKKEEPKKKEEKKKEEDKEHE--EEEAMSGLSALFG 106
>sp|P08055|RL12_SULAC 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|1076169|pir||S53651
ribosomal protein L12 - Sulfolobus acidocaldarius
>gi|7428676|pir||R5UC12 ribosomal protein L12 -
Sulfolobus acidocaldarius >gi|47503|emb|CAA41765.1|
(X59038) ribosomal protein L12 [Sulfolobus solfataricus]
Length = 105
Score = 113 bits (281), Expect = 3e-25
Identities = 64/108 (59%), Positives = 81/108 (74%), Gaps = 4/108 (3%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKA-AM 59
MEY+YA+LLLH+ KEI+E+N+K VL AAG+ DE R+KA+ AAL+ VNIDE+++ A AM
Sbjct: 1 MEYIYASLLLHAAKKEISEENIKNVLSAAGITVDEVRLKAVAAALKEVNIDEILKTATAM 60
Query: 60 PVAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
PVA AAPA + AE K+EEKKEEEK+ SEEE GLS+LFG
Sbjct: 61 PVAAVAAPAGQQTQQAAE--KKEEKKEEEKKGP-SEEEIGGGLSSLFG 105
>prf||1406252A ribosomal A protein SacL12 [Sulfolobus acidocaldarius]
Length = 106
Score = 113 bits (281), Expect = 3e-25
Identities = 67/109 (61%), Positives = 83/109 (75%), Gaps = 5/109 (4%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKA-AM 59
MEY+YA+LLLH+ KEI+E+N+K VL AAG+ DE R+KA+ AALE VNIDE+++ A AM
Sbjct: 1 MEYIYASLLLHAAKKEISEENIKNVLSAAGITVDEVRLKAVAAALEEVNIDEILKTATAM 60
Query: 60 PV-AVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
PV AVAAAPA + AE K+EEKKEEEK+ SEEE GLS+LFG
Sbjct: 61 PVAAVAAAPAGQQTQQAAE--KKEEKKEEEKKGP-SEEEIGGGLSSLFG 106
>sp|P10623|RL12_METVA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|71177|pir||R6MXL2
ribosomal protein L12 - Methanococcus vannielii
>gi|150068|gb|AAA72191.1| (J03187) ribosomal protein L12
[Methanococcus vannielii]
Length = 99
Score = 105 bits (260), Expect = 9e-23
Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 8/106 (7%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEY+YAALLL+S KE+ E+ +KAVL A G+E ++AR+KALVAALEGV+I E I KAA+
Sbjct: 1 MEYIYAALLLNSANKEVTEEAVKAVLVAGGIEANDARVKALVAALEGVDIAEAIAKAAIA 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALF 106
AAAP AA A APAE KKEE+K++ + A AGL ALF
Sbjct: 61 PVAAAAPVAA-AAAPAEVKKEEKKED-------TTAAAAAGLGALF 98
>gb|AAF89101.1|AF199442_3 (AF199442) ribosomal protein L12 [Methanococcoides burtonii]
Length = 100
Score = 102 bits (251), Expect = 1e-21
Identities = 62/108 (57%), Positives = 74/108 (68%), Gaps = 9/108 (8%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEY+YAALLLH+ GK+I E+++ AVL AAG E +E+R KALVAALE V+I+E + AA
Sbjct: 1 MEYIYAALLLHNAGKDITEESVSAVLSAAGTEVNESRAKALVAALEDVDIEEAMATAAF- 59
Query: 61 VAVAAAPAAAP-AEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
A AAA AAP AE AEE EE K EE EE +AGL ALFG
Sbjct: 60 -APAAAVVAAPVAETAAEEVPAEENKAEE------EESGMAGLGALFG 100
>sp|Q9Y9W9|RL12_AERPE 50S RIBOSOMAL PROTEIN L12P >gi|7440755|pir||E72524 probable
ribosomal protein L12 APE2170 - Aeropyrum pernix
(strain K1) >gi|5105869|dbj|BAA81181.1| (AP000063) 111aa
long hypothetical 50S ribosomal protein L12 [Aeropyrum
pernix]
Length = 111
Score = 101 bits (250), Expect = 1e-21
Identities = 53/105 (50%), Positives = 77/105 (72%), Gaps = 2/105 (1%)
Query: 3 YVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMPVA 62
Y++ AL ++ G +I+E+ LK +A G++ DEA+IK LVA+LE VN++EV+++A A
Sbjct: 8 YIHLALAIYYAGGKIDEETLKKAAEAIGMQVDEAKIKMLVASLEEVNLEEVLKQAV--AA 65
Query: 63 VAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGLSALFG 107
AA AAAPA APA E+K EE+K+EE+EE+ EE L+GLS +FG
Sbjct: 66 PVAAAAAAPAAAPAAEEKAEEEKKEEEEEKKEEEVDLSGLSGMFG 110
>sp|P15772|RL12_HALMA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) (HMAL12)
>gi|71178|pir||R5HS12 ribosomal protein L12 [similarity]
- Haloarcula marismortui >gi|43606|emb|CAA35796.1|
(X51430) L12 ribosomal protein (AA 1-115) [Haloarcula
marismortui]
Length = 115
Score = 101 bits (248), Expect = 2e-21
Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 8/115 (6%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAAL+L+ +EINEDNL VL AAGV+ +E+R+KALVAALE V+I+E +++AA
Sbjct: 1 MEYVYAALILNEADEEINEDNLTDVLDAAGVDVEESRVKALVAALEDVDIEEAVDQAAAA 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEK--------EEEVSEEEALAGLSALFG 107
A+ AAAPAE A+E E +++ EE+ +++ +E + GL LFG
Sbjct: 61 PVPASGGAAAPAEGDADEADEADEEAEEEAADDGGDDDDDEDDEASGEGLGELFG 115
>sp|P41197|RL12_HALVO 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) >gi|421723|pir||S34137
ribosomal protein L12 - Haloferax volcanii
>gi|313019|emb|CAA41725.1| (X58924) ribosomal protein
L12e [Haloferax volcanii]
Length = 113
Score = 96.0 bits (235), Expect = 8e-20
Identities = 55/113 (48%), Positives = 75/113 (65%), Gaps = 6/113 (5%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAAL+L+ +E+NE+N+ AVL+AAGV+ +E+R+KALVAALE V+I+E IE AA
Sbjct: 1 MEYVYAALILNESDEEVNEENITAVLEAAGVDVEESRVKALVAALEDVDIEEAIETAAAA 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEE------EVSEEEALAGLSALFG 107
A AA +A A++ EE+ +EE +E + EE GL ALFG
Sbjct: 61 PAPAAGGSAGGEVEAADDDDEEDAEEEAADEGGDDDGDDDEEADGEGLGALFG 113
>sp|P05768|RL12_HALHA 50S RIBOSOMAL PROTEIN L12P ('A' TYPE) (HL20) >gi|71179|pir||R5HS2H
ribosomal protein L12 [validated] - Halobacterium
salinarum >gi|71180|pir||R5HS2C ribosomal protein L12 -
Halobacterium cutirubrum >gi|43455|emb|CAA33181.1|
(X15078) L12e ribosomal protein [Halobacterium
cutirubrum] >gi|43535|emb|CAA31432.1| (X13008) ribosomal
A protein (AA 1-114) [Halobacterium halobium]
>gi|43548|emb|CAA29915.1| (X06736) ribosomal protein (AA
1-114) [Halobacterium halobium]
>gi|10580650|gb|AAG19498.1| (AE005042) 50S ribosomal
protein L12P; Rpl12p [Halobacterium sp. NRC-1]
>gi|225904|prf||1403261A ribosomal A protein
[Halobacterium halobium]
Length = 114
Score = 91.3 bits (223), Expect = 2e-18
Identities = 50/114 (43%), Positives = 75/114 (64%), Gaps = 7/114 (6%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEKAAMP 60
MEYVYAAL+L+ +E+ EDN+ VL+AAGV+ +E+R KALVAALE V+I+E +E+AA
Sbjct: 1 MEYVYAALILNEADEELTEDNITGVLEAAGVDVEESRAKALVAALEDVDIEEAVEEAAAA 60
Query: 61 VAVAAAPAAAPAEAPAEEKKEEEKKE-------EEKEEEVSEEEALAGLSALFG 107
A A A + + EA A++ ++E+ + E+ ++ EE + GL LFG
Sbjct: 61 PAAAPAASGSDDEAAADDGDDDEEADADEAAEAEDAGDDDDEEPSGEGLGDLFG 114
>emb|CAB57310.1| (AJ011716) 60S acidic ribosomal protein P2 [Cyanophora paradoxa]
Length = 109
Score = 73.7 bits (178), Expect = 4e-13
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 12/104 (11%)
Query: 1 MEYVYAALLLHSVGKEI-NEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK--- 56
M++V A LLL+ G E + ++K +L +AGV D+A++KA +A +EG N+ E+I K
Sbjct: 1 MKHVAAYLLLNLAGNEHPSAADIKKLLDSAGVAADDAKLKAFLATVEGKNVAELISKGKG 60
Query: 57 -------AAMPVAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEV 93
AA P A AAAPAA A APA KKEE+K+EEE+E ++
Sbjct: 61 KLASVAVAAAPAAGAAAPAAGGA-APAAAKKEEKKEEEEEETDM 103
>gi|6324534 60S acidic ribosomal protein P2A (L44) (A2) (YP2alpha); Rpp2ap
[Saccharomyces cerevisiae]
>gi|133066|sp|P05319|RLA2_YEAST 60S ACIDIC RIBOSOMAL
PROTEIN P2-ALPHA (A2) (L44) (L12EIB)
>gi|71157|pir||R5BYIB acidic ribosomal protein P2.e.A,
cytosolic - yeast (Saccharomyces cerevisiae)
>gi|4375|emb|CAA30028.1| (X06958) ribosomal protein A2
(AA 1-106) [Saccharomyces cerevisiae]
>gi|171817|gb|AAA34735.1| (M26503) L12eIB protein
[Saccharomyces cerevisiae] >gi|172396|gb|AAA34971.1|
(J03760) ribosomal protein L44 [Saccharomyces
cerevisiae] >gi|1419835|emb|CAA99041.1| (Z74781) ORF
YOL039w [Saccharomyces cerevisiae]
Length = 106
Score = 67.9 bits (163), Expect = 2e-11
Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 1 MEYVYAALLLHSVGKEINEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVIEK---- 56
M+Y+ A LLL++ G + +KA+L++ G+E ++ ++ ++++ALEG ++DE+I +
Sbjct: 1 MKYLAAYLLLNAAGNTPDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEK 60
Query: 57 -AAMPV---AVAAAPAAAPAEAPAEEKKEEEKKEEEKEE 91
AA+P A A AAA +A AEE+KEEE EE ++
Sbjct: 61 LAAVPAAGPASAGGAAAASGDAAAEEEKEEEAAEESDDD 99
>pir||T37490 ribosomal protein rpa6 - fission yeast (Schizosaccharomyces pombe)
>gi|3059147|emb|CAA05696.1| (AJ002734) ribosomal protein
rpa6 [Schizosaccharomyces pombe]
>gi|6179665|emb|CAB59884.1| (AL132769) ribosomal protein
rpa6 [Schizosaccharomyces pombe]
Length = 110
Score = 67.1 bits (161), Expect = 4e-11
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 12/111 (10%)
Query: 1 MEYVYAALLLHSVGKEI-NEDNLKAVLQAAGVEPDEARIKALVAALEGVNIDEVI----- 54
M+Y+ A LLL GK + ++++VL G+E + R++AL+ L+G +IDE+I
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 55 EKAAMP---VAVAAAPAAAPAEAPAEEKKEEEKKEEEKEEEVSEEEALAGL 102
+ A +P A AAAPAAA APA EE KEE KEEE S+E+ GL
Sbjct: 61 KLATVPSGGAAAAAAPAAAGGAAPA---AEEAAKEEAKEEEESDEDMGFGL 108
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.303 0.123 0.307
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36455403
Number of Sequences: 2977
Number of extensions: 1530090
Number of successful extensions: 69454
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69224
Number of HSP's gapped (non-prelim): 27
length of query: 107
length of database: 189,106,746
effective HSP length: 66
effective length of query: 41
effective length of database: 149,606,604
effective search space: 6133870764
effective search space used: 6133870764
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 43 (21.8 bits)
S2: 158 (66.0 bits)