BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1170 (PAB1170) DE:Hypothetical protein
         (220 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75030 hypothetical protein PAB1170 - Pyrococcus abyssi (st...   460  e-129
pir||D71216 hypothetical protein PH1996 - Pyrococcus horikoshii ...   403  e-112

>pir||F75030 hypothetical protein PAB1170 - Pyrococcus abyssi (strain Orsay)
           >gi|5459198|emb|CAB50684.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 220
           
 Score =  460 bits (1171), Expect = e-129
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MIIAFDFDGTLVDSYSCIEEAFYRALEREYPWLPGKRSIAKLLTKLELQFERPKFGKTGR 60
           MIIAFDFDGTLVDSYSCIEEAFYRALEREYPWLPGKRSIAKLLTKLELQFERPKFGKTGR
Sbjct: 1   MIIAFDFDGTLVDSYSCIEEAFYRALEREYPWLPGKRSIAKLLTKLELQFERPKFGKTGR 60

Query: 61  KIRPPLKIFQGRFARAWFEERAKLTKPLDGAHEVLKELRDQGHIVISFSAEDFIPGIKEF 120
           KIRPPLKIFQGRFARAWFEERAKLTKPLDGAHEVLKELRDQGHIVISFSAEDFIPGIKEF
Sbjct: 61  KIRPPLKIFQGRFARAWFEERAKLTKPLDGAHEVLKELRDQGHIVISFSAEDFIPGIKEF 120

Query: 121 RLRQNGLYDLFDDVIIFGKGVSIKDAFSLVRKKYGNETFVWVDDKPWRFIGNGDENTEYV 180
           RLRQNGLYDLFDDVIIFGKGVSIKDAFSLVRKKYGNETFVWVDDKPWRFIGNGDENTEYV
Sbjct: 121 RLRQNGLYDLFDDVIIFGKGVSIKDAFSLVRKKYGNETFVWVDDKPWRFIGNGDENTEYV 180

Query: 181 WMYFPYTARFVTDDILDKIPHLHVIYDLWSLLDVVKRLSV 220
           WMYFPYTARFVTDDILDKIPHLHVIYDLWSLLDVVKRLSV
Sbjct: 181 WMYFPYTARFVTDDILDKIPHLHVIYDLWSLLDVVKRLSV 220


>pir||D71216 hypothetical protein PH1996 - Pyrococcus horikoshii
           >gi|3258440|dbj|BAA31123.1| (AP000007) 225aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 225
           
 Score =  403 bits (1025), Expect = e-112
 Identities = 187/220 (85%), Positives = 206/220 (93%)

Query: 1   MIIAFDFDGTLVDSYSCIEEAFYRALEREYPWLPGKRSIAKLLTKLELQFERPKFGKTGR 60
           MIIAFDFDGTLVDSYSCIEEAFYRAL R YPW PGKR +AKLLTK+ELQFERP+FG+   
Sbjct: 6   MIIAFDFDGTLVDSYSCIEEAFYRALRRTYPWFPGKRYMAKLLTKIELQFERPRFGRHSG 65

Query: 61  KIRPPLKIFQGRFARAWFEERAKLTKPLDGAHEVLKELRDQGHIVISFSAEDFIPGIKEF 120
           KI+ P+KIFQG+FAR WFEERAKLTKPL+GA EVLKEL+ +GHIVISFSAEDFIPG+KE+
Sbjct: 66  KIKAPMKIFQGKFARIWFEERAKLTKPLEGAREVLKELKREGHIVISFSAEDFIPGVKEY 125

Query: 121 RLRQNGLYDLFDDVIIFGKGVSIKDAFSLVRKKYGNETFVWVDDKPWRFIGNGDENTEYV 180
           RLRQ+GLYD+FDDVIIFG GVSIK+AF LVR+KYGNETFVWVDDKPWRFIGNGDENTEYV
Sbjct: 126 RLRQSGLYDIFDDVIIFGHGVSIKEAFRLVREKYGNETFVWVDDKPWRFIGNGDENTEYV 185

Query: 181 WMYFPYTARFVTDDILDKIPHLHVIYDLWSLLDVVKRLSV 220
           WMYFPYTARFVT +ILDKIPHLHVIYDLWSLLDV++RLSV
Sbjct: 186 WMYFPYTARFVTKEILDKIPHLHVIYDLWSLLDVLRRLSV 225


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.145    0.455 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88744143
Number of Sequences: 2977
Number of extensions: 3770730
Number of successful extensions: 10315
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10313
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 189,106,746
effective HSP length: 48
effective length of query: 172
effective length of database: 160,379,370
effective search space: 27585251640
effective search space used: 27585251640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)