BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1174 (PAB1174) DE:Hypothetical protein
(335 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75029 hypothetical protein PAB1174 - Pyrococcus abyssi (st... 636 0.0
sp|O57713|YJ89_PYRHO HYPOTHETICAL PROTEIN PH1989 >gi|7519370|pir... 480 e-135
sp|O27329|YC61_METTH HYPOTHETICAL PROTEIN MTH1261 >gi|7451335|pi... 150 2e-35
sp|Q58990|YF95_METJA HYPOTHETICAL PROTEIN MJ1595 >gi|2128959|pir... 130 3e-29
sp|O26973|Y887_METTH HYPOTHETICAL PROTEIN MTH887 >gi|7451334|pir... 128 1e-28
pir||H75032 hypothetical protein PAB0826 - Pyrococcus abyssi (st... 111 9e-24
sp|O26478|Y378_METTH HYPOTHETICAL 37.0 KDA PROTEIN >gi|7482547|p... 108 8e-23
gb|AAG18808.1| (AE004985) Vng0197c [Halobacterium sp. NRC-1] 72 1e-11
gi|11499813 conserved hypothetical protein [Archaeoglobus fulgid... 69 5e-11
>pir||H75029 hypothetical protein PAB1174 - Pyrococcus abyssi (strain Orsay)
>gi|5459192|emb|CAB50678.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 335
Score = 636 bits (1623), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MAKRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATF 60
MAKRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATF
Sbjct: 1 MAKRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATF 60
Query: 61 LKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMA 120
LKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMA
Sbjct: 61 LKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMA 120
Query: 121 DRILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFL 180
DRILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFL
Sbjct: 121 DRILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFL 180
Query: 181 LKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLA 240
LKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLA
Sbjct: 181 LKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLA 240
Query: 241 DIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKT 300
DIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKT
Sbjct: 241 DIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKT 300
Query: 301 VAVSVTMLDRLISFWTPTLIGGALAFKNKDVFSST 335
VAVSVTMLDRLISFWTPTLIGGALAFKNKDVFSST
Sbjct: 301 VAVSVTMLDRLISFWTPTLIGGALAFKNKDVFSST 335
>sp|O57713|YJ89_PYRHO HYPOTHETICAL PROTEIN PH1989 >gi|7519370|pir||E71215 hypothetical
protein PH1989 - Pyrococcus horikoshii
>gi|3258433|dbj|BAA31116.1| (AP000007) 335aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 335
Score = 480 bits (1223), Expect = e-135
Identities = 235/333 (70%), Positives = 288/333 (85%)
Query: 3 KRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFLK 62
K+YLLI G+ +V+ILLWWAG+ T+ L++ A+ +F+LLAI+MYCISVL WA+RW TFLK
Sbjct: 2 KKYLLIIIGVTLVLILLWWAGIERTIKLMMRADIRFILLAILMYCISVLIWAVRWNTFLK 61
Query: 63 SAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMADR 122
A ++VSF++VIEGVFIGIFLNNLTPGARTGGEAVKV+FIKK+S NGSYSKVFATV+ADR
Sbjct: 62 GANINVSFVKVIEGVFIGIFLNNLTPGARTGGEAVKVIFIKKASSNGSYSKVFATVIADR 121
Query: 123 ILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFLLK 182
ILDVIPV+ FM+LAFLYALT+H +VLLIILGISA+IL +I+L+TT+ S+KEKYALS LL
Sbjct: 122 ILDVIPVVVFMMLAFLYALTIHARVLLIILGISAIILVIILLMTTVFSIKEKYALSALLY 181
Query: 183 LFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLADI 242
L R+F++IFPSK + +E+ I+EKLL E REFK T + LAK KRRL+ST+LYSF+LW ADI
Sbjct: 182 LARIFRKIFPSKFSMSEDKIKEKLLGEIREFKETFLRLAKRKRRLSSTMLYSFILWGADI 241
Query: 243 MKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKTVA 302
+KTYF+FLSLG + QVLLVRMAS+AVAMISVIPGGIGI+E VQS LFLA+G+EK +A
Sbjct: 242 LKTYFIFLSLGGRITFLQVLLVRMASIAVAMISVIPGGIGITEVVQSALFLAVGVEKALA 301
Query: 303 VSVTMLDRLISFWTPTLIGGALAFKNKDVFSST 335
VSVTMLDRLISFW PTL+GG L KN+ + S+
Sbjct: 302 VSVTMLDRLISFWIPTLLGGILVLKNRKLLVSS 334
>sp|O27329|YC61_METTH HYPOTHETICAL PROTEIN MTH1261 >gi|7451335|pir||F69035 conserved
hypothetical protein MTH1261 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622374|gb|AAB85750.1| (AE000892) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 338
Score = 150 bits (375), Expect = 2e-35
Identities = 89/324 (27%), Positives = 169/324 (51%), Gaps = 9/324 (2%)
Query: 3 KRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFLK 62
K +LI G++ + ++ G E D + A+P ++L+A+++ I + + LRW+ +
Sbjct: 4 KGAILIVIGVVALAAMILIIGPGEIEDALRKADPVYVLMAVVLEFIILALFTLRWSITTR 63
Query: 63 SAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMADR 122
+ + V + + +G+ +NNLTP AR GGE V+ + K S+ S FATV+ADR
Sbjct: 64 AVSIDVGKRHLFPMLLVGMAINNLTPSARGGGEPVRAYMLGKYSR-ASMESAFATVIADR 122
Query: 123 ILDVIPVIAFMVLAFLYALTLHVKV---LLIILGISALILTLIVLITTLLSVKEKYALSF 179
LD P I VL + + L+ + +L L S +I+ + + +SV
Sbjct: 123 GLDTFPFIFLAVLTII-GIVLYFDLSRWILAALIASVVIIVVAFFLALYVSVDRDAGERI 181
Query: 180 LLKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWL 239
+ + KR + E +R L EF++T+ ++ KEK L + SF++W+
Sbjct: 182 TGWILGVVKRFYRKNHERLERRVRSAL----HEFQSTMRMMLKEKNVLVYGIPISFLIWI 237
Query: 240 ADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEK 299
+I++ Y +F + G++++L + V + + + MI ++PGG+G + + + G+
Sbjct: 238 LEIIRVYLIFTAFGTDISLLVIAEVFILATLIGMIPLLPGGLGAVDGIMIVFYSYAGVSP 297
Query: 300 TVAVSVTMLDRLISFWTPTLIGGA 323
+V+ + T+++RLISFW + +G A
Sbjct: 298 SVSAAATVVERLISFWMISAMGVA 321
>sp|Q58990|YF95_METJA HYPOTHETICAL PROTEIN MJ1595 >gi|2128959|pir||B64499 hypothetical
protein MJ1595 - Methanococcus jannaschii
>gi|1592205|gb|AAB99613.1| (U67599) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 336
Score = 130 bits (323), Expect = 3e-29
Identities = 82/323 (25%), Positives = 162/323 (49%), Gaps = 11/323 (3%)
Query: 1 MAKRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATF 60
+ K +L+ L ++ ++ + G+ + + +++ NP++++LA I+ + + + RW
Sbjct: 6 ITKSTILLIISFLFILAIMAYIGLDKIIKVLINTNPEYVILAFILQILVSVILSARWKFI 65
Query: 61 LKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMA 120
+K S +F + V +G+F+NN+TP R GGEA + ++ K + F+TV+
Sbjct: 66 IKILGYSANFKNIFLLVLMGLFINNITPSMRGGGEAFRAYYLSKLEEIPK-GLAFSTVVV 124
Query: 121 DRILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFL 180
+R+LD + F + Y + K L ++ + +L +I L++ K L
Sbjct: 125 ERVLDTAIFLFFTLFVIGYFVVTGFKYLEYLILSWIFLFSLTAIIIYLIANK-----GLL 179
Query: 181 LKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKR--RLASTLLYSFVLW 238
+K + +Y + K+L+ EF ++ K KR + + S + +
Sbjct: 180 IKTVTKISKFICKYCSYNYD--ETKILQSIEEFYNSM-KFFKNKRGWEVVVAIFLSVMRY 236
Query: 239 LADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIE 298
+ DI+K + +FLSL V++ V V + ++ ++S+ P G G ++ V F A I
Sbjct: 237 IFDILKLWLLFLSLSYVVSVICVSAVYLITLLSGVLSITPSGFGTADTVMILSFSAFNIP 296
Query: 299 KTVAVSVTMLDRLISFWTPTLIG 321
+VA +VT+LDRL+S+ PT++G
Sbjct: 297 PSVAAAVTLLDRLVSYILPTILG 319
>sp|O26973|Y887_METTH HYPOTHETICAL PROTEIN MTH887 >gi|7451334|pir||E69218 conserved
hypothetical protein MTH887 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621981|gb|AAB85385.1| (AE000864) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 351
Score = 128 bits (318), Expect = 1e-28
Identities = 78/315 (24%), Positives = 154/315 (48%), Gaps = 11/315 (3%)
Query: 13 LIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFLKSAKVSVSFLR 72
+++ ++ ++AG + L + +P FL L ++ I ++ W LRW L + SF R
Sbjct: 29 VVIFLIGFFAGFGDILRALEGTSPYFLALNFVLEAIILILWTLRWRLILNVVDDAPSFPR 88
Query: 73 VIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMADRILDVIPVIAF 132
++ +F IF NN+TPGA GGE ++ ++ + + + FA+ ADR+ + IP
Sbjct: 89 LMMLLFTSIFGNNITPGA-AGGEPLRA-YLLREVEGTPFEIGFASSTADRVFEFIPFALI 146
Query: 133 MVLAFLYALTLHVKVLLIILGISALILTLIVLITTLL------SVKEKYALSFLLKLFRL 186
+L+ + +T + + I+ +S LIL I + + + ++ ALS +L
Sbjct: 147 SILSAVLIMTWEISIWTRIV-VSVLILVTIAGFSLAVYAGMNKKIAQRIALSVTRRLVSW 205
Query: 187 FKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLADIMKTY 246
F R +++ I EK++ F ++R S +W D+ + Y
Sbjct: 206 FSRFREGGISFAG--IHEKVIFYINRFNDGFSTAITDRRVFVIGFFISLGMWALDVCRLY 263
Query: 247 FVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKTVAVSVT 306
FL++G ++++ + ++++ ++PG +G+ E + GLF GI ++ +
Sbjct: 264 VCFLAVGVSPPAVPLIIIYTVGILISLLPILPGSLGLREGILVGLFAVAGIGADYVMAAS 323
Query: 307 MLDRLISFWTPTLIG 321
++DR+ S+ PTLIG
Sbjct: 324 VVDRIASYIAPTLIG 338
>pir||H75032 hypothetical protein PAB0826 - Pyrococcus abyssi (strain Orsay)
>gi|5458670|emb|CAB50157.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 285
Score = 111 bits (276), Expect = 9e-24
Identities = 80/279 (28%), Positives = 137/279 (48%), Gaps = 42/279 (15%)
Query: 40 LLAIIMYCISVLTWALRWATFLKSAKVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKV 99
+LA+I Y +SV +A+RW LK V L + GV IG+ +N +TP +R GGE +
Sbjct: 19 ILAVITYYLSVFLFAIRWKYVLKGLGYEVKLLDSLIGVLIGLSINAITPMSRAGGEMARA 78
Query: 100 LFIKKSSQNGSYSKVFATVMADRILDVIPVIAFMVLAFLYALTLHVKV-----LLIILGI 154
L+IK S S ++ A+++ +RIL+ PV ++ A L + +H + +IILG+
Sbjct: 79 LWIKLKS-GVSITEAIASMIYERILEGFPVAGLLLSAILL-IPIHRRASETLAFIIILGL 136
Query: 155 SALILTLIVLITTLLSVKEKYALSFLLKLFRLFKRIFPSKLTYTEETIREKLLKEFREFK 214
IL +I L K +++ +E K
Sbjct: 137 MVFILRYEEIIELL-----------------------------------SKRIEKIKECK 161
Query: 215 ATLIVLAKEKRRLASTLLYSFVLWLADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMI 274
LI+L K + + S +W+ DI++ + L++ L++ ++++ +++I
Sbjct: 162 DRLIMLRKNFQINIIAISTSSAVWMLDILRFKLLGLAINLSFPWKMTLVLSISNLILSVI 221
Query: 275 SVIPGGIGISEAVQSGLFLAIGIEKTVAVSVTMLDRLIS 313
SV PGG+GI E G+ L +G K VA+S+T+L+R IS
Sbjct: 222 SVTPGGVGIVEGGLIGIMLILGYPKEVALSLTILERFIS 260
>sp|O26478|Y378_METTH HYPOTHETICAL 37.0 KDA PROTEIN >gi|7482547|pir||H69148 hypothetical
protein MTH378 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621439|gb|AAB84884.1| (AE000823)
unknown [Methanobacterium thermoautotrophicum]
Length = 334
Score = 108 bits (268), Expect = 8e-23
Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 23/324 (7%)
Query: 3 KRYLLIGAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFLK 62
KR+ IL+++ L+ W G + + A+ + +A++++ + LRW +
Sbjct: 5 KRFYFFALSILLILALIIWMGPSRIIRAVYMADWMIIAIALLIHMGVLAVRGLRWGFIIG 64
Query: 63 SA-KVSVSFLRVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNG-SYSKVFATVMA 120
++ V+F+ IG+F NL+P R+ GE + L KK NG S+ + +
Sbjct: 65 QPWRMRVNFMVKT----IGLFAGNLSP-MRSAGEVMNALAGKKL--NGIELSEGLSAGLT 117
Query: 121 DRILDVIPVIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFL 180
+R D+ ++LA + V V+ +I A++ LI + L++ +E+ L
Sbjct: 118 ERFFDLGIGGGLLLLA-----AVMVPVIRVIALFGAILSVLITYLIYLVNWREEKGLRIY 172
Query: 181 LKLFRLFKRIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLAST---LLYSFVL 237
++ + +R L +EET+ E L + +I + S + S +
Sbjct: 173 QRIHSIIER-----LPVSEETL-ENLYERLTSGIKGMIGYTRSYSNFTSLGVIFILSLLS 226
Query: 238 WLADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGI 297
WL + ++ Y VF++ G E + V+++ + + V ++S +PGG+G E +GLF+ G+
Sbjct: 227 WLMECLRLYLVFMAFGVETSFSAVIIIFLLANLVGILSALPGGMGSMEVSMAGLFVVFGV 286
Query: 298 EKTVAVSVTMLDRLISFWTPTLIG 321
+A S+ ++DR+ISFW T +G
Sbjct: 287 PGFLAGSIALVDRIISFWMVTALG 310
>gb|AAG18808.1| (AE004985) Vng0197c [Halobacterium sp. NRC-1]
Length = 342
Score = 71.8 bits (173), Expect = 1e-11
Identities = 83/335 (24%), Positives = 149/335 (43%), Gaps = 34/335 (10%)
Query: 9 GAGILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFL----KSA 64
GA ++ +L W G++E I+TA + + +++ +L W + T L +
Sbjct: 14 GAAAVVFAVLFWLIGIQE----IITALGRARIPLVVVAGALMLGWIVLQGTALWIVWRIL 69
Query: 65 KVSVSFLRVIEGVFIGI-FLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMADRI 123
++VS I VF G F NN+TP + GGE V L S + Y A +
Sbjct: 70 DITVSVRSAIL-VFAGTSFANNITPFGQAGGEPVAALLTTNVS-DADYETALAAIAGADA 127
Query: 124 LDVIPVIAFMV-----LAFLYALTLHVKVLLIILGISALILTLIV-----LITTLLSVKE 173
L+ +P I + A + ++ ++ ++ I+G LI+ + L TT+ +
Sbjct: 128 LNFVPSIGLALTGTAAYAIVNTVSPRLRSVVGIVGAFVLIVGGLAVAGWRLRTTIQAAVV 187
Query: 174 KYALSFLLKLFRLFKRI-FPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLL 232
+ A L L R+ R+ PS E++ EF A++ LA ++ + +
Sbjct: 188 RVATPALRWLARVLPRVPVPSP---------ERIEAGIEEFVASVERLAADRTGVLKVIG 238
Query: 233 YSFVLWLADIMKTYFVFLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLF 292
+ L + + VF++LGS + ++ L V + +A I PGG+G E+V L
Sbjct: 239 LATAALLCQAIAMWVVFIALGSPIPIYVPLFV-VPVGTMAGIGPTPGGLGGIESVHVALL 297
Query: 293 LAI-GIEKTVAVSVTMLDRLISFW-TPTLIGGALA 325
A+ + + ++ R+ FW T T+ GG+LA
Sbjct: 298 TALTSAAAPLVAAAVVIHRIGGFWLTMTVGGGSLA 332
>gi|11499813 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7388529|sp|O28052|YM31_ARCFU HYPOTHETICAL PROTEIN
AF2231 >gi|7483228|pir||G69528 conserved hypothetical
protein AF2231 - Archaeoglobus fulgidus
>gi|2648294|gb|AAB89024.1| (AE000951) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 328
Score = 69.5 bits (167), Expect = 5e-11
Identities = 74/313 (23%), Positives = 133/313 (41%), Gaps = 14/313 (4%)
Query: 12 ILIVIILLWWAGVRETLDLILTANPKFLLLAIIMYCISVLTWALRWATFLKSAKVSVSFL 71
I + I+ + T +I AN L++A ++ L WALR +SF
Sbjct: 8 IAVTAIIFKYTESELTWSVIKRANWLLLIVAFLLQVSFWLLWALRMKLLSNYLGYRISFF 67
Query: 72 RVIEGVFIGIFLNNLTPGARTGGEAVKVLFIKKSSQNGSYSKVFATVMADRILDVI---P 128
+E +F ++TP + GGE V+V + S V+A+RILD +
Sbjct: 68 HSLEITMASMFTASITPSS-AGGEPVRVKMLSDRGVEVGTSAFI--VLAERILDSMYFST 124
Query: 129 VIAFMVLAFLYALTLHVKVLLIILGISALILTLIVLITTLLSVKEKYALSFLLKLFRLFK 188
+ ++ ++ + K+ +I + + + L ++ I S +K+A L K R F
Sbjct: 125 ALPVFLIVTGFSTSFGFKIAIIFITLLLVFLYILYRIFRNESSIDKFA-QLLYKAVRKFN 183
Query: 189 RIFPSKLTYTEETIREKLLKEFREFKATLIVLAKEKRRLASTLLYSFVLWLADIMKTYFV 248
K Y+ RE L+ FRE AT+ +L+ + L + V+W A +
Sbjct: 184 EKKAEK--YSSTFSRE--LRRFRE--ATIKMLSDSPSGILVLYLVTLVMWSASFAIPSVI 237
Query: 249 FLSLGSEVNLFQVLLVRMASMAVAMISVIPGGIGISEAVQSGLFLAIGIEKTVAVSVTML 308
++LG + ++ + V+++ + PG GI+E + L+ + V V L
Sbjct: 238 LVALGYDAYFLYSYTAQLIIVIVSLVPLTPGSSGIAEVSMAYLYSNFVPTNVLGVLVG-L 296
Query: 309 DRLISFWTPTLIG 321
RLI++ T G
Sbjct: 297 WRLITYHTNIFFG 309
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.143 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102331629
Number of Sequences: 2977
Number of extensions: 3674540
Number of successful extensions: 15622
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15603
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 189,106,746
effective HSP length: 55
effective length of query: 280
effective length of database: 156,189,961
effective search space: 43733189080
effective search space used: 43733189080
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 165 (68.7 bits)