BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1176 (secF-like) DE:PROTEIN-EXPORT MEMBRANE PROTEIN SECF
RELATED
(308 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75029 protein-export membrane protein secf related PAB1176... 592 e-168
pir||B71215 hypothetical protein PH1986 - Pyrococcus horikoshii ... 502 e-141
sp|Q58650|YC53_METJA HYPOTHETICAL PROTEIN MJ1253 >gi|2129224|pir... 169 5e-41
gb|AAG20161.1| (AE005093) protein-export membrane protein; SecF ... 163 3e-39
pir||B69213 protein-export membrane protein, SecF - Methanobacte... 161 1e-38
dbj|BAB04956.1| (AP001511) protein-export membrane protein [Baci... 75 1e-12
gb|AAC31122.1| (AF024506) SecDF protein [Bacillus subtilis] 75 1e-12
pir||H69704 protein-export membrane protein secF - Bacillus subt... 75 1e-12
pir||F75350 probable protein-export membrane protein - Deinococc... 73 6e-12
sp|Q9ZE34|SECF_RICPR PROTEIN-EXPORT MEMBRANE PROTEIN SECF >gi|74... 71 2e-11
pir||G81312 protein-export membrane protein Cj1092c [imported] -... 71 2e-11
>pir||E75029 protein-export membrane protein secf related PAB1176 - Pyrococcus
abyssi (strain Orsay) >gi|5459189|emb|CAB50675.1|
(AJ248288) PROTEIN-EXPORT MEMBRANE PROTEIN SECF RELATED
[Pyrococcus abyssi]
Length = 308
Score = 592 bits (1509), Expect = e-168
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MTKSDLIIMFNRVGRGGIVIKEKLKILVEMEPRKMVLYPLIVFILALIVIAATYIKTGSP 60
MTKSDLIIMFNRVGRGGIVIKEKLKILVEMEPRKMVLYPLIVFILALIVIAATYIKTGSP
Sbjct: 1 MTKSDLIIMFNRVGRGGIVIKEKLKILVEMEPRKMVLYPLIVFILALIVIAATYIKTGSP 60
Query: 61 VKEGIELKGGSVISLQGVNADPDELASEIRKLGVDANVERFTGITGGSGIRIYIPAGEDV 120
VKEGIELKGGSVISLQGVNADPDELASEIRKLGVDANVERFTGITGGSGIRIYIPAGEDV
Sbjct: 61 VKEGIELKGGSVISLQGVNADPDELASEIRKLGVDANVERFTGITGGSGIRIYIPAGEDV 120
Query: 121 KKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLT 180
KKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLT
Sbjct: 121 KKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLT 180
Query: 181 VVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEA 240
VVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEA
Sbjct: 181 VVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEA 240
Query: 241 YYSSLRTGFTMSTTTLGALISLWLFSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMY 300
YYSSLRTGFTMSTTTLGALISLWLFSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMY
Sbjct: 241 YYSSLRTGFTMSTTTLGALISLWLFSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMY 300
Query: 301 IAKREGKK 308
IAKREGKK
Sbjct: 301 IAKREGKK 308
>pir||B71215 hypothetical protein PH1986 - Pyrococcus horikoshii
>gi|3258430|dbj|BAA31113.1| (AP000007) 293aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 293
Score = 502 bits (1279), Expect = e-141
Identities = 246/291 (84%), Positives = 279/291 (95%)
Query: 18 IVIKEKLKILVEMEPRKMVLYPLIVFILALIVIAATYIKTGSPVKEGIELKGGSVISLQG 77
++IKEKL++LV+M+P++MVLYPLIVFI+ALI+IA YIKTGSPV+EGIELKGGSVI+LQG
Sbjct: 3 LMIKEKLEVLVKMDPKRMVLYPLIVFIIALIIIAGMYIKTGSPVREGIELKGGSVITLQG 62
Query: 78 VNADPDELASEIRKLGVDANVERFTGITGGSGIRIYIPAGEDVKKVQDFLKKKFPGVEPQ 137
+N DPD+LASE+ KLG++ANVE+FTG+TGG G+RIYIPAGED+ KVQ+FLK+KFPGVEPQ
Sbjct: 63 INVDPDQLASELGKLGIEANVEKFTGVTGGKGVRIYIPAGEDINKVQNFLKEKFPGVEPQ 122
Query: 138 ITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLTVVFSAFSDMVIAVALMN 197
+T IGPTFG+MVREQGIKAI YAFIGMA+VVFLFFR+ VPSLTVVFSAFSDMVIAVALM+
Sbjct: 123 VTFIGPTFGKMVREQGIKAIVYAFIGMAVVVFLFFRVPVPSLTVVFSAFSDMVIAVALMD 182
Query: 198 IFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEAYYSSLRTGFTMSTTTLG 257
IFGIELSQATIAALLMLIGYSVDSNILLTTRLL+RKEF+VEEAYYSSLRTGFTMSTTTLG
Sbjct: 183 IFGIELSQATIAALLMLIGYSVDSNILLTTRLLRRKEFSVEEAYYSSLRTGFTMSTTTLG 242
Query: 258 ALISLWLFSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMYIAKREGKK 308
AL SLW+FSTAKVIDDIASVL+FGLLADFMNTWI NAGVLR+YI KREGKK
Sbjct: 243 ALASLWIFSTAKVIDDIASVLIFGLLADFMNTWIFNAGVLRLYIKKREGKK 293
>sp|Q58650|YC53_METJA HYPOTHETICAL PROTEIN MJ1253 >gi|2129224|pir||D64456 protein-export
membrane protein - Methanococcus jannaschii
>gi|1591886|gb|AAB99256.1| (U67565) protein translocase,
subunit SECF (secF) [Methanococcus jannaschii]
Length = 282
Score = 169 bits (423), Expect = 5e-41
Identities = 107/284 (37%), Positives = 170/284 (59%), Gaps = 22/284 (7%)
Query: 36 VLYPLIVFILALIVIAATYIKTGSPVKEGIELKGGSVISLQGVNADPDELASEIRKLGVD 95
+ P+ + IL++++I + + I++ GG+ I+++ VN + D + G+
Sbjct: 9 IAIPIALLILSILLIGF------KGIPKSIDITGGTEITIK-VNENMDITPLKESLNGI- 60
Query: 96 ANVERFTGITGGSGIRIYIPA-GEDVKKVQDFLKKKF-----PGVEPQITVIGPTFGEMV 149
A V++ + G I I EDV V+ +K+ F + IG T
Sbjct: 61 AEVKK---LESADGYYIVIRCKNEDVDIVKQKIKEFFHVDSLDKLNYSEKTIGATLSSKF 117
Query: 150 REQGIKAITYAFIGMAIVVFLFFRILVPSLTVVFSAFSDMVIAVALMNIFGIELSQATIA 209
E+G KA+ +AF+ MAIVV+L+FR VPS ++ SA SD+++A+ M++ GIELS ATIA
Sbjct: 118 FEEGFKAVGFAFMFMAIVVYLYFRNPVPSGAIILSALSDIIMALGAMSLLGIELSSATIA 177
Query: 210 ALLMLIGYSVDSNILLTTRLLKRKEFTVEEAYYSSLRTGFTMSTTTLGALISLWL----- 264
ALLM+IGYSVDS+ILLTTR+LKR + +E +++TG TM+ TT+ A++ L +
Sbjct: 178 ALLMVIGYSVDSDILLTTRVLKRLTKSFDETVKEAMKTGLTMTLTTITAMLILLIVVKLF 237
Query: 265 FSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMYIAKREGKK 308
A ++ +IA+VL+ L+AD +NTW+LNAG+L+ YI + KK
Sbjct: 238 IPVADILANIATVLILALIADIINTWLLNAGILKYYITEYRAKK 281
>gb|AAG20161.1| (AE005093) protein-export membrane protein; SecF [Halobacterium sp.
NRC-1]
Length = 284
Score = 163 bits (408), Expect = 3e-39
Identities = 108/290 (37%), Positives = 155/290 (53%), Gaps = 39/290 (13%)
Query: 27 LVEMEPRKMVLYPLIVFILALIVIAATYIKTGSPVKEGIELKGGSVISLQG------VNA 80
L + R++V PL V ++AL VI TG+PV GIE GGS + Q V A
Sbjct: 11 LSQYSMRQLVAPPLAVLVVALAVIGGWMAATGAPVSPGIEFTGGSEVVAQSSAPSAQVKA 70
Query: 81 DPDELASEIRKLGVDAN-------VERFTGITGGSGIRIYIPAGEDVKKVQDFLKKKFPG 133
D + R +G + N E GI+G + D++ VQ
Sbjct: 71 AFDAEPTSFRSVGTNGNRYLATFQSENAPGISGDTA---------DIEIVQS-------- 113
Query: 134 VEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLTVVFSAFSDMVIAV 193
+ PTFG + + + AF+GM+++VF FR VPS+ VV SAFSD+V+ V
Sbjct: 114 -----QEVSPTFGSSTQGLALLGVAAAFLGMSVLVFALFRTFVPSIAVVVSAFSDIVVPV 168
Query: 194 ALMNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEAYYSSLRTGFTMST 253
ALMN+F I+LS T+AALLMLIGYSVDS+ILL +L+R E+ ++ TG TM+
Sbjct: 169 ALMNVFEIKLSLGTVAALLMLIGYSVDSDILLNNHVLRRSG-GFWESVDRAMNTGVTMTL 227
Query: 254 TTLGALISLWLFS---TAKVIDDIASVLVFGLLADFMNTWILNAGVLRMY 300
T++ A++ + + S ++ I VLV GL+ D MNT++LN +LR Y
Sbjct: 228 TSIAAMVVMTIVSYIFGITLMSSIGLVLVMGLVTDLMNTYMLNVTLLRWY 277
>pir||B69213 protein-export membrane protein, SecF - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621939|gb|AAB85346.1| (AE000861) protein-export
membrane protein, SecF [Methanobacterium
thermoautotrophicum]
Length = 257
Score = 161 bits (402), Expect = 1e-38
Identities = 98/248 (39%), Positives = 148/248 (59%), Gaps = 14/248 (5%)
Query: 65 IELKGGSVISLQ-GVNADPDELASEIR-KLGV-DANVERFTGITGGSGIRIYIPAGEDVK 121
++LKGG++ L + EL S +R KLG D V G + + DV
Sbjct: 15 VDLKGGALAELTLEKSVTQAELESLLREKLGTGDIKVLSIRG----ERVTVQFGTDMDVV 70
Query: 122 KVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLTV 181
KV + L+ +GP + Q AI +AF+ M++ VF+ FR VPSL V
Sbjct: 71 KVSEALRGT--ATINSYKAVGPVLSKQAMNQIYWAIGFAFLFMSVTVFIIFRDPVPSLAV 128
Query: 182 VFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEFTVEEAY 241
+ +A SD++IAV M++FGI LS A++ A+LMLIGYSVD++ILLTTR+LKR++ T+ E
Sbjct: 129 ILAAASDIIIAVGGMSLFGIPLSLASVGAILMLIGYSVDTDILLTTRVLKRRKGTINERA 188
Query: 242 YSSLRTGFTMSTTTLGALISLWLFST-----AKVIDDIASVLVFGLLADFMNTWILNAGV 296
+++TG TMS + ++ +L+L + A+V+ DIA+VL+ GLLAD + TW++N G+
Sbjct: 189 LGAMKTGVTMSIAAIASMAALYLVTVFVMPEARVLSDIAAVLIIGLLADILTTWLMNLGI 248
Query: 297 LRMYIAKR 304
LR Y+ R
Sbjct: 249 LRWYLEVR 256
>dbj|BAB04956.1| (AP001511) protein-export membrane protein [Bacillus halodurans]
Length = 311
Score = 74.9 bits (181), Expect = 1e-12
Identities = 60/290 (20%), Positives = 134/290 (45%), Gaps = 22/290 (7%)
Query: 33 RKMVLYPLIVFILALIVIAATYIKTGSPVKEG--IELKGGSVISLQGVNADPDELASEIR 90
+K L + ++ +IV+ + G + G IE++G S ++ + V A+ + + E
Sbjct: 15 KKFFLISGLFTLIGIIVLLTFGLNLGIDFESGSRIEVQGESTLTSEEVQAEFEAIGFEPD 74
Query: 91 KLGVDANVERFTGITGGSGIRIYIPAGEDVKKVQDFLKKKFPGVEPQITVIGPTFGEMVR 150
+ + N T + + E++ +Q+ + G+ P I+ + PT G+ +
Sbjct: 75 DITLAGNNNELAYATFSRDL-----SEEEISTIQNHFNDAY-GLMPNISTVSPTVGKELA 128
Query: 151 EQGIKAITYAFIGMAIVVFLFFRILVPSLTVVFSAFSDMVIAVALMNIFGIELSQATIAA 210
+ ++ A IG+ I V + F +L + + + F D +A+ ++ IE++ IAA
Sbjct: 129 RNALISVLIALIGIIIYVTIRFELLY-GVAAIVALFHDAFFIIAIFSLLQIEVNVPFIAA 187
Query: 211 LLMLIGYSVDSNILLTTRLLKRKEFT------------VEEAYYSSLRTGFTMSTTTLGA 258
+L ++GYS++ I+ R+ + ++ V ++ +L M T + A
Sbjct: 188 VLTIVGYSINDTIVTFDRIRENMKYAKRVKGFDDLADIVNKSLVQTLARSINMVLTVMFA 247
Query: 259 LISLWLFSTAKVIDDIASVLVFGLLADFMNTWILNAGVLRMYIAKREGKK 308
++++F + I A L+ GL+A ++ L + + ++ +K+ KK
Sbjct: 248 AAAIFVFG-GEAIRSFAFALLIGLVAGTYSSMFLASQLWLVWKSKQLKKK 296
>gb|AAC31122.1| (AF024506) SecDF protein [Bacillus subtilis]
Length = 737
Score = 74.5 bits (180), Expect = 1e-12
Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 17/247 (6%)
Query: 64 GIELKGGSVISLQGVNA-DPDELASEIRKLGVDANVERFTGITGGSGIRIYI--PAGEDV 120
GI+ G+ I +Q + +++ + LG+D + +G G+ ++ P E +
Sbjct: 479 GIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIGVARFVGVPDKETI 538
Query: 121 KKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLT 180
KV+ + K K+ G +P ++ + PT G+ + + A+ A IG+ I V + F + ++
Sbjct: 539 AKVKTYFKDKY-GSDPNVSTVSPTVGKELARNALYAVAIASIGIIIYVSIRFEYKM-AIA 596
Query: 181 VVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTR----LLKRKEFT 236
+ S D V +I +E+ IAA+L +IGYS++ I+ R + KRK T
Sbjct: 597 AIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTIVTFDRVREHMKKRKPKT 656
Query: 237 VEEAYY---SSLRTGFTMS----TTTLGALISLWLFSTAKVIDDIASVLVFGLLADFMNT 289
+ + SL+ FT S T + +++L +F A I + + L+ GLL ++
Sbjct: 657 FADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFG-ASSITNFSIALLVGLLTGVYSS 715
Query: 290 WILNAGV 296
+ A +
Sbjct: 716 LYIAAQI 722
>pir||H69704 protein-export membrane protein secF - Bacillus subtilis
>gi|2635229|emb|CAB14724.1| (Z99118) protein-export
membrane protein [Bacillus subtilis]
Length = 571
Score = 74.5 bits (180), Expect = 1e-12
Identities = 62/247 (25%), Positives = 118/247 (47%), Gaps = 17/247 (6%)
Query: 64 GIELKGGSVISLQGVNA-DPDELASEIRKLGVDANVERFTGITGGSGIRIYI--PAGEDV 120
GI+ G+ I +Q + +++ + LG+D + +G G+ ++ P E +
Sbjct: 313 GIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIGVARFVGVPDKETI 372
Query: 121 KKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILVPSLT 180
KV+ + K K+ G +P ++ + PT G+ + + A+ A IG+ I V + F + ++
Sbjct: 373 AKVKTYFKDKY-GSDPNVSTVSPTVGKELARNALYAVAIASIGIIIYVSIRFEYKM-AIA 430
Query: 181 VVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTR----LLKRKEFT 236
+ S D V +I +E+ IAA+L +IGYS++ I+ R + KRK T
Sbjct: 431 AIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTIVTFDRVREHMKKRKPKT 490
Query: 237 VEEAYY---SSLRTGFTMS----TTTLGALISLWLFSTAKVIDDIASVLVFGLLADFMNT 289
+ + SL+ FT S T + +++L +F A I + + L+ GLL ++
Sbjct: 491 FADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFG-ASSITNFSIALLVGLLTGVYSS 549
Query: 290 WILNAGV 296
+ A +
Sbjct: 550 LYIAAQI 556
>pir||F75350 probable protein-export membrane protein - Deinococcus radiodurans
(strain R1) >gi|6459594|gb|AAF11371.1|AE002022_4
(AE002022) protein-export membrane protein, putative
[Deinococcus radiodurans]
Length = 768
Score = 72.6 bits (175), Expect = 6e-12
Identities = 67/276 (24%), Positives = 130/276 (46%), Gaps = 33/276 (11%)
Query: 30 MEPRKMVLYPLIVFILALIVIAATYIKTGSPVKEGIELKGGSVISLQGVNADPDELASEI 89
M+P K++ ++ LA + AT + G++ G+ ++ + D ++
Sbjct: 471 MKPAKVITTLSVLLALAGAALVAT-----RGLNYGVDFAPGTTLTAR---VDRQVTTEQL 522
Query: 90 RKLGVDANVERFTGITG-----------GSGIRIYIPAGED--VKKVQDFLKKKFPGVEP 136
R + A V + TG + G + +P D VK++ + K G
Sbjct: 523 RNSVIGAGVSKVTGQSATIQRDTTPGQQGQNFTVKVPELNDAEVKQIGAAIGKLPQGQVL 582
Query: 137 QITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRI-LVPSLTVVFSAFSDMVIAVAL 195
+GP G+ + ++ I A+ +G+ I+V++ FR + L + +A D+ IA+ L
Sbjct: 583 ASETVGPAVGKELTQKTIYAVLLG-LGL-ILVYVGFRFDFIMGLGSIIAAIHDVAIAMGL 640
Query: 196 MNIFGIELSQATIAALLMLIGYSVDSNILLTTRLLKRKEF--------TVEEAYYSSLRT 247
++ G+E + A++AALL LIGYS++ +I+++ R+ + + V A +L
Sbjct: 641 FSLLGLEFTVASVAALLTLIGYSLNDSIIVSDRIRENMKTMRGHSYREIVNAAINQTLSR 700
Query: 248 GFTMSTTTLGALISLWLFSTAKVIDDIASVLVFGLL 283
S +T+ LISL +F V+ D + +L+ G+L
Sbjct: 701 TVMTSVSTMLPLISLLIFG-GPVLRDFSLILLVGIL 735
>sp|Q9ZE34|SECF_RICPR PROTEIN-EXPORT MEMBRANE PROTEIN SECF >gi|7430087|pir||H71720
protein-export membrane protein secF (secF) RP114 -
Rickettsia prowazekii >gi|3860682|emb|CAA14583.1|
(AJ235270) PROTEIN-EXPORT MEMBRANE PROTEIN SECF (secF)
[Rickettsia prowazekii]
Length = 311
Score = 71.0 bits (171), Expect = 2e-11
Identities = 64/261 (24%), Positives = 128/261 (48%), Gaps = 19/261 (7%)
Query: 64 GIELKGGSVISLQGVNA-DPDELASEIRKLGVDANVERFTGITGGSGIRIYIPAGEDVKK 122
GI+ GG VI ++ A D ++ + + L + V + G IR + E++ K
Sbjct: 47 GIDFVGGIVIEVRLDQAPDLPKMRAVLSALEIGEVVLQNFGSERDLSIRFGSSSEENLMK 106
Query: 123 VQDFLKKKFPGVEP------QITVIGPTFGEMVREQGIKAITYAFIGMAIVVFLFFRILV 176
D +K P ++ +GP G + E G A+ ++F+ + + + + F
Sbjct: 107 NIDIIKTSLRNNFPYNFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIGVRFEWYF 166
Query: 177 PSLTVVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGYSVDSNILLTTR----LLKR 232
++ + D+++A+ M++ ++ + +TIAA+L +IGYSV+ ++++ R L K
Sbjct: 167 -GFGILIALVHDVILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY 225
Query: 233 KEFTVEEAYYSSL-----RTGFTMSTTTLGALISLWLFSTAKVIDDIASVLVFGLLADFM 287
+ + E S+ RT T+ TT L A ++L LF K I + ++ FG++A
Sbjct: 226 HKKNITEIINLSINETLSRTILTVITTLL-ANLALILFG-GKAIHSFSVLVFFGIIAGTY 283
Query: 288 NTWILNAGVLRMYIAKREGKK 308
++ ++A +L M+ ++ KK
Sbjct: 284 SSIFISAPILTMFANRKFNKK 304
>pir||G81312 protein-export membrane protein Cj1092c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968526|emb|CAB73347.1|
(AL139077) protein-export membrane protein
[Campylobacter jejuni]
Length = 323
Score = 70.6 bits (170), Expect = 2e-11
Identities = 62/260 (23%), Positives = 123/260 (46%), Gaps = 22/260 (8%)
Query: 47 LIVIAATYIKTGSPVKEGIELKGGSVISLQGVNADPDELASEI-RKLGVDANV------- 98
++ + Y+ ++ GI+ GG+++ L+ NA P EI G N+
Sbjct: 25 ILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGS 84
Query: 99 -ERFTGITGGSGIRIYIPAGEDVKKVQDFLKKKFPGVEPQITVIGPTFGEMVREQGIKAI 157
E T GS + GE + + LK + V+GP G+ +R +G+ AI
Sbjct: 85 NEEVTIRFLGSNDNVSNDIGEHISTL---LKDTGKFEVRRADVVGPKVGDELRNKGLMAI 141
Query: 158 TYAFIGMAIVVFLFFRILVPSLTVVFSAFSDMVIAVALMNIFGIELSQATIAALLMLIGY 217
+ I + I + L F +L + S D+VI + +++F I+++ T+AA+L ++GY
Sbjct: 142 AVSLIAILIYIALRFEWRF-ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGY 200
Query: 218 SVDSNILLTTRL---LKRKEFT-----VEEAYYSSLRTGFTMSTTTLGALISLWLFSTAK 269
S++ I++ R+ +K + T + E+ ++L S TL ++ L+ F +
Sbjct: 201 SLNDTIIIFDRIREGIKTSKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFG-GE 259
Query: 270 VIDDIASVLVFGLLADFMNT 289
+I + L+ G++A +++
Sbjct: 260 MIQGFSLALIVGIIAGTLSS 279
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.325 0.142 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101453189
Number of Sequences: 2977
Number of extensions: 4065233
Number of successful extensions: 15080
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15060
Number of HSP's gapped (non-prelim): 15
length of query: 308
length of database: 189,106,746
effective HSP length: 57
effective length of query: 251
effective length of database: 154,992,987
effective search space: 38903239737
effective search space used: 38903239737
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 165 (68.7 bits)