BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1177 (secD) DE:PROTEIN-EXPORT MEMBRANE PROTEIN (SECD)
(507 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75029 protein-export membrane protein (secd) PAB1177 - Pyr... 978 0.0
pir||A71215 hypothetical protein PH1985 - Pyrococcus horikoshii ... 853 0.0
sp|Q57575|Y111_METJA HYPOTHETICAL PROTEIN MJ0111 >gi|2129225|pir... 192 8e-48
sp|O26937|Y849_METTH HYPOTHETICAL PROTEIN MTH849 >gi|7429828|pir... 178 1e-43
gb|AAG20160.1| (AE005093) protein-export membrane protein; SecD ... 154 2e-36
pir||E72325 hypothetical protein TM0860 - Thermotoga maritima (s... 99 1e-19
sp|Q9ZG86|SECD_BRUAB PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|39... 87 5e-16
sp|Q50634|SECD_MYCTU PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 82 2e-14
sp|O33517|SECD_RHOCA PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|22... 82 2e-14
sp|Q55610|SECD_SYNY3 PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 81 3e-14
sp|O67102|SECD_AQUAE PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 80 4e-14
sp|O83425|SECD_TREPA PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 78 2e-13
pir||S72722 protein secretion factor secD - Mycobacterium leprae... 76 9e-13
sp|P38387|SECD_MYCLE PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|31... 76 9e-13
pir||F75350 probable protein-export membrane protein - Deinococc... 76 1e-12
pir||B82285 protein-export membrane protein SecD VC0743 [importe... 75 1e-12
sp|Q9ZCW8|SECD_RICPR PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 75 2e-12
dbj|BAB04955.1| (AP001511) protein-export membrane protein [Baci... 75 2e-12
sp|Q53955|SECD_STRCO PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|10... 75 3e-12
emb|CAB70918.1| (AL137778) protein-export membrane protein [Stre... 75 3e-12
sp|O26074|SECD_HELPY PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 74 3e-12
sp|O51596|SECD_BORBU PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|26... 74 3e-12
pir||C70181 protein-export membrane protein (secD) homolog - Lym... 74 3e-12
gb|AAD53945.1| (AF179925) general protein secretion pathway subu... 73 6e-12
pir||H81312 protein-export membrane protein Cj1093c [imported] -... 73 8e-12
pir||JQ0696 secretion protein secD - Escherichia coli >gi|581230... 73 1e-11
sp|P19673|SECD_ECOLI PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|74... 73 1e-11
sp|Q9ZFF8|SECD_SALCH PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|39... 73 1e-11
sp|Q9ZJ66|SECD_HELPJ PROTEIN-EXPORT MEMBRANE PROTEIN >gi|7445414... 73 1e-11
pir||H81178 protein-export membrane protein SecD NMB0607 [import... 72 2e-11
pir||C81926 probable protein-export membrane protein NMA0812 [im... 72 2e-11
pir||H69704 protein-export membrane protein secF - Bacillus subt... 71 2e-11
gb|AAC31122.1| (AF024506) SecDF protein [Bacillus subtilis] 71 2e-11
gb|AAD44348.1| (AF163861) SecD protein [Enterobacter aerogenes] 71 4e-11
pir||F83169 secretion protein SecD PA3821 [imported] - Pseudomon... 70 7e-11
pir||A81179 protein-export membrane protein SecF NMB0608 [import... 69 9e-11
pir||E83169 secretion protein SecF PA3820 [imported] - Pseudomon... 69 9e-11
>pir||D75029 protein-export membrane protein (secd) PAB1177 - Pyrococcus abyssi
(strain Orsay) >gi|5459188|emb|CAB50674.1| (AJ248288)
PROTEIN-EXPORT MEMBRANE PROTEIN (SECD) [Pyrococcus
abyssi]
Length = 507
Score = 978 bits (2501), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MNWKKILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVR 60
MNWKKILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVR
Sbjct: 1 MNWKKILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVR 60
Query: 61 IALEQRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFA 120
IALEQRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFA
Sbjct: 61 IALEQRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFA 120
Query: 121 TGKDILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTLVV 180
TGKDILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTLVV
Sbjct: 121 TGKDILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTLVV 180
Query: 181 SKDFYDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSEKVLLVDVD 240
SKDFYDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSEKVLLVDVD
Sbjct: 181 SKDFYDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSEKVLLVDVD 240
Query: 241 GNLEKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGG 300
GNLEKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGG
Sbjct: 241 GNLEKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGG 300
Query: 301 SQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGA 360
SQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGA
Sbjct: 301 SQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGA 360
Query: 361 IVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVIT 420
IVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVIT
Sbjct: 361 IVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVIT 420
Query: 421 DELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT 480
DELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT
Sbjct: 421 DELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT 480
Query: 481 ILGILIGILITRPAYGEIAKVLIGERR 507
ILGILIGILITRPAYGEIAKVLIGERR
Sbjct: 481 ILGILIGILITRPAYGEIAKVLIGERR 507
>pir||A71215 hypothetical protein PH1985 - Pyrococcus horikoshii
>gi|3258429|dbj|BAA31112.1| (AP000007) 507aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 507
Score = 853 bits (2180), Expect = 0.0
Identities = 429/507 (84%), Positives = 471/507 (92%)
Query: 1 MNWKKILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVR 60
M WKKI+LNGRV+LL FLI+SI SLA RGLTFGLDISGGISITVKLEKPV QTMEQVR
Sbjct: 1 MKWKKIILNGRVLLLITFLILSIASLAARGLTFGLDISGGISITVKLEKPVTPQTMEQVR 60
Query: 61 IALEQRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFA 120
+ALEQRLNALGVKDI IEPWGNQFV+VKVAGV EEE NQL+ETIERQGVFYAEFQGVIFA
Sbjct: 61 LALEQRLNALGVKDIVIEPWGNQFVIVKVAGVGEEEGNQLIETIERQGVFYAEFQGVIFA 120
Query: 121 TGKDILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTLVV 180
TGKDILNVGSVSYDPR+ AWVVPFRLSK+AAEKFAKLALGKAGYPVDMFLDPPVNST+V
Sbjct: 121 TGKDILNVGSVSYDPREGAWVVPFRLSKEAAEKFAKLALGKAGYPVDMFLDPPVNSTIVA 180
Query: 181 SKDFYDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSEKVLLVDVD 240
SK+FY ALNSPRF+ GNM+L ER+ KAFNI+II+Y+NQT +EIA++A GSEK++LV VD
Sbjct: 181 SKEFYQALNSPRFIMSGNMSLIERVRKAFNIRIIEYSNQTPEEIARLANGSEKIILVGVD 240
Query: 241 GNLEKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGG 300
G L ++LK++G KVEV R +ED+E FVRRVLRLYGPYRV EGLATG+ STEVMISIGG
Sbjct: 241 GKLAEELKSMGFKVEVRNREKNEDLEDFVRRVLRLYGPYRVSEGLATGKPSTEVMISIGG 300
Query: 301 SQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGA 360
SQND++ARNDAQVVAVVLRSGSLP+KLSIERIDYISPKLGE+FK+QVLIAGIAALLVVG
Sbjct: 301 SQNDIRARNDAQVVAVVLRSGSLPIKLSIERIDYISPKLGENFKKQVLIAGIAALLVVGG 360
Query: 361 IVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVIT 420
IVYLHYRKL+IAIPVM TSFSEVLIILGIAS+I+WNLDLPSIAGIIAAIGTGVDQQIVIT
Sbjct: 361 IVYLHYRKLRIAIPVMLTSFSEVLIILGIASMIKWNLDLPSIAGIIAAIGTGVDQQIVIT 420
Query: 421 DELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT 480
DELLG+ + KKR+VKRSG+L+RMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT
Sbjct: 421 DELLGETSTRKKRVVKRSGVLRRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTT 480
Query: 481 ILGILIGILITRPAYGEIAKVLIGERR 507
ILGIL+GILITRPAYGEIAKVLIG RR
Sbjct: 481 ILGILVGILITRPAYGEIAKVLIGWRR 507
>sp|Q57575|Y111_METJA HYPOTHETICAL PROTEIN MJ0111 >gi|2129225|pir||G64313 protein-export
membrane protein - Methanococcus jannaschii
>gi|1590887|gb|AAB98092.1| (U67468) protein translocase,
subunit SECD (secD) [Methanococcus jannaschii]
Length = 396
Score = 192 bits (483), Expect = 8e-48
Identities = 111/214 (51%), Positives = 142/214 (65%), Gaps = 9/214 (4%)
Query: 285 LATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFK 344
LA G+ + +I++G + ++A + L+SG+LPVKL IE I ISP+ G++F
Sbjct: 184 LADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGKEFL 243
Query: 345 RQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAG 404
+ IA + A + VG IV + Y++ KIAIP++ T SEV+IILG AS+I W LDLPSIAG
Sbjct: 244 KGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPSIAG 303
Query: 405 IIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSF 464
IIAA+GTGVD QIVITDE L AGK I + RAFFII ASA+T+I AM
Sbjct: 304 IIAAVGTGVDNQIVITDEAL-KRGAGK--------IRASIKRAFFIIFASAATSIAAMLP 354
Query: 465 LFKFFVGGLRGFAFTTILGILIGILITRPAYGEI 498
LF VG L+GFA TTI G+LIGI ITRPA+ I
Sbjct: 355 LFVLGVGMLKGFAITTIAGVLIGIFITRPAFARI 388
Score = 120 bits (299), Expect = 3e-26
Identities = 62/194 (31%), Positives = 116/194 (58%), Gaps = 4/194 (2%)
Query: 1 MNWKKILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVR 60
M+ K+L + ++++L +F+ +S+ + +GL FG+D+SGG I +K EKP+ + +E
Sbjct: 1 MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATI 60
Query: 61 IALEQRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFA 120
+ +RLN G+ D+ I P GN ++V++ + +++++ +++QGVF A+ +
Sbjct: 61 KIITERLNYNGLNDVVIYPRGNDEIIVEIP--KSCDTDRIIKILKQQGVFVAKIDNITAY 118
Query: 121 TGKDILNVGSVSYDPRQSAWV--VPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTL 178
TG D+ NV + P+ W VPF L+ + A+KFA++A GKA + V++++D + S
Sbjct: 119 TGSDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKGKAYHKVELYMDGKLISAP 178
Query: 179 VVSKDFYDALNSPR 192
V+S D D P+
Sbjct: 179 VLSPDLADGKPHPQ 192
>sp|O26937|Y849_METTH HYPOTHETICAL PROTEIN MTH849 >gi|7429828|pir||C69213 protein-export
membrane protein, SecD - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621940|gb|AAB85347.1| (AE000861) protein-export
membrane protein, SecD [Methanobacterium
thermoautotrophicum]
Length = 403
Score = 178 bits (447), Expect = 1e-43
Identities = 101/229 (44%), Positives = 146/229 (63%), Gaps = 15/229 (6%)
Query: 274 RLYGPYRVGEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERID 333
RL + +ATG+ T+V I+ G + +A A+ + +L+SGSLPVK+ I +
Sbjct: 170 RLITAPEISAEVATGKPVTDVRIT-GAENSKAEAEVQAKEIETLLKSGSLPVKVKIVGVS 228
Query: 334 YISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASII 393
+SP+LG+ F +IAG+ A+L + I+ + YR + +P+ FT+ +E+L+ILG A++I
Sbjct: 229 SVSPELGKQFAEGAVIAGLLAVLAIAVILIVRYRSPILVLPIFFTTLAELLLILGAAAVI 288
Query: 394 RWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILA 453
RWN+DL +IAGI+AAIGTGVD QI+ITDE+L +G+ R +R R+ AFFII A
Sbjct: 289 RWNIDLAAIAGILAAIGTGVDDQIIITDEVL----SGEGRRTRRK---FRIKDAFFIIFA 341
Query: 454 SASTTIVAMSFLFKF-------FVGGLRGFAFTTILGILIGILITRPAY 495
SA T I AM L +G L GFAFTT+LG++IG+ ITRP Y
Sbjct: 342 SAGTLIAAMLPLAYIGFSRGATGIGLLAGFAFTTVLGVIIGVFITRPVY 390
Score = 127 bits (315), Expect = 4e-28
Identities = 74/188 (39%), Positives = 109/188 (57%), Gaps = 11/188 (5%)
Query: 5 KILLNGRVILLTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQTMEQVRIALE 64
K L + RVILL + + SI +++T G+ GLD+ GG I ++LE+PVD TM V L+
Sbjct: 7 KFLKDYRVILLIVLVAASITAISTMGIQQGLDLQGGSLIQIQLERPVDAATMNTVTSVLD 66
Query: 65 QRLNALGVKDITIEPWGNQFVLVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFATGKD 124
+RLN GVKD+ + G+Q V+V++AGV + +Q+ + + + G F A+ TG D
Sbjct: 67 KRLNIFGVKDVKVRASGDQNVIVEIAGV---QPDQVADIVGKPGKFEAKIGNETVLTGTD 123
Query: 125 ILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLD------PPVNSTL 178
I++V + W VPFRLS D A KFA+ A GKAG PV M+LD P +++ +
Sbjct: 124 IVSVQPPIITGNE--WEVPFRLSTDGARKFAEAARGKAGEPVKMYLDDRLITAPEISAEV 181
Query: 179 VVSKDFYD 186
K D
Sbjct: 182 ATGKPVTD 189
>gb|AAG20160.1| (AE005093) protein-export membrane protein; SecD [Halobacterium sp.
NRC-1]
Length = 509
Score = 154 bits (385), Expect = 2e-36
Identities = 81/193 (41%), Positives = 129/193 (65%), Gaps = 6/193 (3%)
Query: 311 AQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLK 370
A+ + V L++G+LP +++++ Y++P + +K L+ G+AA + V +V L Y + K
Sbjct: 319 ARNLQVNLQAGALPAEITVQNSYYVAPSFAQKYKPLSLVTGLAAAIAVAIMVLLRYGEPK 378
Query: 371 IAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAG 430
IAIP++FT+ +EV+I+LG A++ LDL +AG IA IGTGVD ++I DE++ +
Sbjct: 379 IAIPMVFTALAEVVILLGFAAVSGLALDLSHLAGFIAVIGTGVDDLVIIADEVMTE-QVS 437
Query: 431 KKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGILI 490
RI + R +A ++I A+A+TTI+AMS L +G LRGFA TILG+LIG+L+
Sbjct: 438 SSRIFQ-----SRFRKALWVIGAAAATTILAMSPLAVLSLGDLRGFALVTILGVLIGVLV 492
Query: 491 TRPAYGEIAKVLI 503
TRPAYG++ + L+
Sbjct: 493 TRPAYGDVLRRLL 505
>pir||E72325 hypothetical protein TM0860 - Thermotoga maritima (strain MSB8)
>gi|4981394|gb|AAD35942.1|AE001752_9 (AE001752)
protein-export membrane protein SecD, putative
[Thermotoga maritima]
Length = 465
Score = 99.1 bits (243), Expect = 1e-19
Identities = 126/496 (25%), Positives = 211/496 (42%), Gaps = 81/496 (16%)
Query: 11 RVILLTLFLIMSIVSLAT---------RGLTFGLDISGGISITVKLEKPVDTQT----ME 57
RV L+ + L+++ LA + GLDI GG I +E T+ ++
Sbjct: 5 RVRLIVVLLVLAGALLAIFWPSKGGWISNIRLGLDIKGGARIEYMVEVQQGTENPSDVVD 64
Query: 58 QVRIALEQRLNALGVKDITIEPW---GNQFVLVKVAGVNEEEANQLVETIERQGVFYAEF 114
V L RL+A G + ++ +++V++ G + Q + I GV Y
Sbjct: 65 DVWTVLRNRLDAAGYTEAAVKKVLRDNKYYIVVEIPGATDTV--QAEKLIGSTGVLY--- 119
Query: 115 QGVIFATGKDILNVGSVSYDPRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDMFLDPPV 174
FA D + DP + VP LS +A + A G+ G +L V
Sbjct: 120 ----FAQVLDEY----LGEDPSK----VP-ELSLEARRENAVWLKGRDG---KWYL---V 160
Query: 175 NSTLVVSKDFYDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSEKV 234
++ KD L +PR ++ +E K + + A+E I K +
Sbjct: 161 KKEIMGRKDL--VLEAPRIVYA-----RPEVETRTGRYGYKVSFELAKEYVDIFKKITQA 213
Query: 235 LLVDVDGNLEKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEV 294
L V K+ A+ L +D+ FV +V+ + G+ TG S E
Sbjct: 214 LYVPEGTYDPKKRLAIVL----------DDVVQFVGQVVAIITD---GKAEITGNFSLE- 259
Query: 295 MISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAA 354
+A+ +A +LRSG+LP +L +++P LG D L AGI
Sbjct: 260 ---------------EAKQLAAILRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIIG 304
Query: 355 LLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVD 414
L++V + ++YR + I + +++LG+ + ++ L LP IAGII IGT VD
Sbjct: 305 LILVLVYMIIYYRTMGIVADLAL--IYNTVLLLGVMAAGKFILTLPGIAGIILTIGTTVD 362
Query: 415 QQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLR 474
++I + + ++ GK ++ I R+ IL + TTI+ L+ F G ++
Sbjct: 363 GNVIIYERIKEEMRLGKP---VKTSIAAGFDRSLSTILDANITTILTGLILYYFGTGTIK 419
Query: 475 GFAFTTILGILIGILI 490
GFA T I+G+L I +
Sbjct: 420 GFAITLIIGVLGSIFV 435
>sp|Q9ZG86|SECD_BRUAB PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|3982836|gb|AAC83691.1|
(AF085217) putative membrane protein [Brucella abortus]
Length = 518
Score = 87.0 bits (212), Expect = 5e-16
Identities = 113/461 (24%), Positives = 190/461 (40%), Gaps = 90/461 (19%)
Query: 26 LATRGLTFGLDISGGISITVKLEKPVDTQTMEQVRIALEQRLNALGVKDITIEPWGNQFV 85
L + ++ GLD+SGG + ++++ T +E + QRL LG + +E G +
Sbjct: 40 LPKKQVSLGLDLSGGSRLILQVQNAGKTD-LETTANIMRQRLEELGYGNPVVEGEGRNQI 98
Query: 86 LVKVAGVNEEEANQLVETIERQGVFYAEFQGVIFATGKDILNV-GSVSYDPRQSAWVVPF 144
V+V G+ + QL+ KDIL + G++S+
Sbjct: 99 RVEVPGLYDA---QLL---------------------KDILTIRGNLSFRAMDDT----- 129
Query: 145 RLSKDAAEKFAKLALGKAGYPVDMFLDPPVNSTLVVSKDFYDALNSPRFMFEGNMTLAER 204
+S D A + A + Y D DPPV L +
Sbjct: 130 -MSPDDAIRGTPPADSEIVYSFD---DPPVGYLLKKTP---------------------- 163
Query: 205 IEKAFNIKIIKYNNQTAQEIAKIAKGSEKVLLVDVDGNLEKQLKALGLKVEVWKRGNDED 264
I+ ++ T + + A + V+ + +D N ++L ++ +GN+
Sbjct: 164 --------ILTGHDITDAKASISADDGQPVITLTLDDNGRRRL------ADLTAQGNENS 209
Query: 265 MESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLP 324
V + V +G T + G DL+A N+ +AVVLRSG+LP
Sbjct: 210 FAIVVDNQV-------VSAPTVSGPLDTSELQIEGAF--DLQAANN---MAVVLRSGALP 257
Query: 325 VKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVL 384
+++ I+ LGED+ ++A + A LVVG + L Y L + V ++
Sbjct: 258 QAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALV--VNIV 315
Query: 385 IILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRI-VKRSGILKR 443
I+ + S+I ++ L SIAG++ IG VD I+I + + D G + SG
Sbjct: 316 ILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFY-- 373
Query: 444 MGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGI 484
RA I+ + TT++A LF G + GFA T +GI
Sbjct: 374 --RALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGI 412
>sp|Q50634|SECD_MYCTU PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7445415|pir||B70726
probable secD - Mycobacterium tuberculosis (strain
H37RV) >gi|1478225|emb|CAB01256.1| (Z77724) secD
[Mycobacterium tuberculosis]
Length = 573
Score = 81.9 bits (199), Expect = 2e-14
Identities = 58/189 (30%), Positives = 97/189 (50%), Gaps = 9/189 (4%)
Query: 311 AQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLK 370
A+ +A VL+ GSLP+ +S LG R +IAG LL+V L+YR L
Sbjct: 350 ARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLG 409
Query: 371 I--AIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVT 428
+ A+ ++ + I++ + I + LDL IAG+I IGT D +V + + ++
Sbjct: 410 LLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIR 469
Query: 429 AGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAF----TTILGI 484
G+ RS + + RA I++ + T +A + L+ +G ++GFAF TTIL +
Sbjct: 470 EGRS---FRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDL 526
Query: 485 LIGILITRP 493
++ L+T P
Sbjct: 527 VVVFLVTWP 535
>sp|O33517|SECD_RHOCA PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|2252773|gb|AAB62801.1|
(U69979) SecD [Rhodobacter capsulatus]
Length = 554
Score = 81.5 bits (198), Expect = 2e-14
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 33/213 (15%)
Query: 282 GEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGE 341
G G+ TGR S E +A +A++LR+G+LP ++ I P+LG
Sbjct: 344 GSGIITGRFSIE----------------EATDLALLLRAGALPAGMTFLEERTIGPELGA 387
Query: 342 DFKRQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASI------IRW 395
D + ++A + + V A + Y +F FS V + + IA I I
Sbjct: 388 DSVKAGMVASVIGFVAVVAYMIASYG--------LFGFFSSVALFINIAFIFAVMGAIGG 439
Query: 396 NLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASA 455
+ LP IAGI+ IGT VD ++I + + ++ +GK + I +A I+ +
Sbjct: 440 TMTLPGIAGIVLTIGTSVDANVLIYERMREEIRSGKSPV---RAIELGFDKAMSAIIDAN 496
Query: 456 STTIVAMSFLFKFFVGGLRGFAFTTILGILIGI 488
T+ ++ + LF G +RGFA TT++GI I
Sbjct: 497 VTSFLSSAILFVLGAGPVRGFAVTTMIGIAASI 529
>sp|Q55610|SECD_SYNY3 PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7430008|pir||S76266
hypothetical protein - Synechocystis sp. (strain PCC
6803) >gi|1001493|dbj|BAA10118.1| (D64000)
protein-export membrane protein SecD [Synechocystis sp.]
Length = 472
Score = 80.8 bits (196), Expect = 3e-14
Identities = 55/178 (30%), Positives = 94/178 (51%), Gaps = 5/178 (2%)
Query: 311 AQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLK 370
A +AV LR GSLP + + + LG++ R+ L+AG L++V + ++YR
Sbjct: 261 ANDLAVQLRGGSLPFPVEVVENRTVGATLGQESIRRSLVAGFVGLVLVLVFMAVYYRLPG 320
Query: 371 IAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAG 430
I + ++ ++ L +++ L LP IAG I +IG VD ++I + ++ AG
Sbjct: 321 IVADISLMIYA--VLTLAAFALVGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAG 378
Query: 431 KKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGI 488
+ RS + RAF IL S TT++A + LF F G ++GFA T +G+++ +
Sbjct: 379 NT--LYRS-VEAGFFRAFSSILDSNVTTLIACAALFWFGSGLVKGFALTLAIGVMVSL 433
>sp|O67102|SECD_AQUAE PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7430006|pir||C70384
protein export membrane protein SecD - Aquifex aeolicus
>gi|2983481|gb|AAC07060.1| (AE000716) protein export
membrane protein SecD [Aquifex aeolicus]
Length = 501
Score = 80.4 bits (195), Expect = 4e-14
Identities = 109/486 (22%), Positives = 206/486 (41%), Gaps = 33/486 (6%)
Query: 15 LTLFLIMSIVSLATRGLTFGLDISGGISITVKLEKPVDTQT-MEQVRIALEQRLNALGVK 73
L + ++S ++ + GLD+ GG+ ++ + V + E + L ++L+ V
Sbjct: 17 LVILTLLSAYAVVKYPINLGLDLKGGVEFLLEPDFSVAIEREYEDLARNLREKLSKFNVL 76
Query: 74 DITIEPWGNQFVLVKVAGVNE-EEANQLVETIERQGVFYAEFQGVIFATGKDILNVGSVS 132
++ G V++++ E E ++++ I +F E ++ + V +
Sbjct: 77 EVYATKEG---VIIELLDKKEVENIKKVIQDINPNVIFEEEGDKLVVKFTQKY--VEQLK 131
Query: 133 YD-PRQSAWVVPFRLSKDAAEKFAKLALGKAGYPVDM--FLDPP-----VNSTLVVSKDF 184
D RQS ++ R+ K + +GK VD+ FLD + ST +
Sbjct: 132 EDIVRQSIEIIRDRIDKLGVTQPVVTRVGKYRILVDLPGFLDVERAKKIIGSTASLELKL 191
Query: 185 YDALNSPRFMFEGNMTLAERIEKAFNIKIIKYNNQTAQEIAKIAKGSE-KVLLVDVDGNL 243
+++ R E +T I + + + E A + G + K V VD NL
Sbjct: 192 VIDVSTDRKELEKKLTPDREILPSRDGR-----EWFLVEKAPVITGQDLKTAYVGVD-NL 245
Query: 244 EKQLKALGLKVEVWKRGNDEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGGSQN 303
+ LK E ++ ++ +R+ + V + + S I+ G+
Sbjct: 246 GQPAVNFELKGEAAEKFGKFTEQNIGKRLAIVLDRKVVSAPVIRSKISDRGQIT--GNFT 303
Query: 304 DLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVY 363
+AR+ +A++LR+GSLP L + + P LG+D Q + AGI A++++ ++
Sbjct: 304 AQEARD----LALILRTGSLPSPLKFLQEKIVGPSLGKDAIEQGIKAGILAIILLAVVLI 359
Query: 364 LHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDEL 423
Y+ I + + F VL +L + + L LP IAGII +G VD ++I + +
Sbjct: 360 ARYKTAGITANI--SIFLNVLFLLASMAFLGATLTLPGIAGIILNMGIAVDSNVLIFERV 417
Query: 424 LGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILG 483
++ G I R + + T +VA LF+F G ++GFA T LG
Sbjct: 418 KEELRLGN---TVSKAIELGFKRTLSAVWDTHVTLLVASVILFQFGSGPVKGFATTLALG 474
Query: 484 ILIGIL 489
+ +
Sbjct: 475 TIASFI 480
>sp|O83425|SECD_TREPA PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7430009|pir||H71326
probable protein-export membrane protein (secD) -
syphilis spirochete >gi|3322694|gb|AAC65398.1|
(AE001219) protein-export membrane protein (secD)
[Treponema pallidum]
Length = 583
Score = 78.0 bits (189), Expect = 2e-13
Identities = 56/211 (26%), Positives = 95/211 (44%), Gaps = 11/211 (5%)
Query: 281 VGEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLG 340
V +G + I+ G + +AQ + LRS L V L IE + +G
Sbjct: 349 VSDGKIRSAPAIREPITAGSGSISGFSAEEAQNLKTALRSAWLNVALEIENQQVVGASMG 408
Query: 341 EDFKRQ---VLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNL 397
E+ RQ L+ G+ A+L+ + Y + + + I+ G+ S L
Sbjct: 409 EESIRQGTRALVWGLCAVLLFMLVWYQ-----EAGVNACVAQLLNLYIMFGVLSAFNLTL 463
Query: 398 DLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASAST 457
L SIAG+I IG VD +V+ + + ++ GK R + + RAF+ I+ S T
Sbjct: 464 TLSSIAGMILTIGMAVDANVVVFERIREELALGKSR---GAAVCSGFERAFWAIMDSNVT 520
Query: 458 TIVAMSFLFKFFVGGLRGFAFTTILGILIGI 488
T +A FL G ++GFA++ +G++ +
Sbjct: 521 TFIAALFLSVLGTGPIKGFAYSLAIGVVSSV 551
>pir||S72722 protein secretion factor secD - Mycobacterium leprae
>gi|466811|gb|AAA17086.1| (U00011) secD; membrane
protein secD (protein secretion factor); B1177_C1_164
[Mycobacterium leprae]
Length = 701
Score = 76.1 bits (184), Expect = 9e-13
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 311 AQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLK 370
A+ +A VL+ GSLP+ +S LG R LIAG L +V L+YR L
Sbjct: 261 ARQLANVLKYGSLPLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLG 320
Query: 371 IAIPVMF----TSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGD 426
+ T +L++LG I + LDL IAG+I IGT D +V + + +
Sbjct: 321 LLTAFSLFCSGTIIFAILVLLG--RYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDE 378
Query: 427 VTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAF----TTIL 482
+ G+ RS + + RA I++ + T +A + L +G ++GFAF TTIL
Sbjct: 379 IREGRS---FRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTIL 435
Query: 483 GILIGILITRP 493
+++ L+T P
Sbjct: 436 DLVVVFLVTWP 446
>sp|P38387|SECD_MYCLE PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|3136009|emb|CAA19080.1|
(AL023591) protein export membrane protein SecD
[Mycobacterium leprae]
Length = 571
Score = 76.1 bits (184), Expect = 9e-13
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 311 AQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLK 370
A+ +A VL+ GSLP+ +S LG R LIAG L +V L+YR L
Sbjct: 348 ARQLANVLKYGSLPLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLG 407
Query: 371 IAIPVMF----TSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGD 426
+ T +L++LG I + LDL IAG+I IGT D +V + + +
Sbjct: 408 LLTAFSLFCSGTIIFAILVLLG--RYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDE 465
Query: 427 VTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAF----TTIL 482
+ G+ RS + + RA I++ + T +A + L +G ++GFAF TTIL
Sbjct: 466 IREGRS---FRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTIL 522
Query: 483 GILIGILITRP 493
+++ L+T P
Sbjct: 523 DLVVVFLVTWP 533
>pir||F75350 probable protein-export membrane protein - Deinococcus radiodurans
(strain R1) >gi|6459594|gb|AAF11371.1|AE002022_4
(AE002022) protein-export membrane protein, putative
[Deinococcus radiodurans]
Length = 768
Score = 75.7 bits (183), Expect = 1e-12
Identities = 55/184 (29%), Positives = 96/184 (51%), Gaps = 20/184 (10%)
Query: 310 DAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYR-- 367
+A +A+VL+SG+LP+K+ I P LG D R IA + + +V +++ +Y
Sbjct: 262 EASQLALVLKSGALPIKIVTAAERSIGPSLGADAIRSGAIAALVGIGLVFVMLFAYYGLW 321
Query: 368 -KLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGD 426
L A+ ++F+S +IILGI L LP IAG++ IG VD ++ + + +
Sbjct: 322 FGLVGALGLLFSS----IIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEE 377
Query: 427 VTAGKKRIVKRSGILKRMGRAF-----FIILASASTTIVAMSFLFKFFVGGLRGFAFTTI 481
+ GK GI +G + I+ +AS + A++ L+ + G ++GFA T I
Sbjct: 378 LARGK-------GIKNAIGAGYEHSTAAILDVNASHLLSALA-LYNYSTGAVKGFAVTLI 429
Query: 482 LGIL 485
+G++
Sbjct: 430 IGVI 433
>pir||B82285 protein-export membrane protein SecD VC0743 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655188|gb|AAF93908.1| (AE004160) protein-export
membrane protein SecD [Vibrio cholerae]
Length = 617
Score = 75.3 bits (182), Expect = 1e-12
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 6/199 (3%)
Query: 310 DAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKL 369
+A +A++LR+G+L +SI I P +G+ + A I ++ V L+YRK
Sbjct: 418 EAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKF 477
Query: 370 KIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDVT 428
+ + + +++I+G+ S+I + LP IAGI+ +G VD ++I + + ++
Sbjct: 478 GMIANIAL--MANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELR 535
Query: 429 AGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGI 488
GK + I + AF I + TT++ LF G ++GFA T +GIL +
Sbjct: 536 EGKN---PQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSM 592
Query: 489 LITRPAYGEIAKVLIGERR 507
I +L G +R
Sbjct: 593 FTAIVGTRCIVNLLYGGKR 611
>sp|Q9ZCW8|SECD_RICPR PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7445418|pir||E71663
protein-export membrane protein secd (secD) RP586 -
Rickettsia prowazekii >gi|3861131|emb|CAA15031.1|
(AJ235272) PROTEIN-EXPORT MEMBRANE PROTEIN SECD (secD)
[Rickettsia prowazekii]
Length = 518
Score = 74.9 bits (181), Expect = 2e-12
Identities = 61/204 (29%), Positives = 91/204 (43%), Gaps = 21/204 (10%)
Query: 282 GEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGE 341
G G+ TG + E S N+L A++LR GSLP L I I P LG
Sbjct: 307 GNGIITGNFTIE-------SANEL---------ALLLRVGSLPTPLKIIEERSIGPNLGA 350
Query: 342 DFKRQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPS 401
D AG+ + V + L Y + + + +L IL + S+ + L LP
Sbjct: 351 DSIESGKKAGLIGFVAVCIFMILSYGVIGLFANIAL--ILALLYILALLSLFQATLTLPG 408
Query: 402 IAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVA 461
IAGII IG VD ++I + + ++ G + I AF I+ S TT++
Sbjct: 409 IAGIILTIGMAVDANVLIYERIKEELHKGVSNLY---AIRTGFESAFATIIDSNITTLIV 465
Query: 462 MSFLFKFFVGGLRGFAFTTILGIL 485
L+ F VG ++GFA +GI+
Sbjct: 466 AFALYIFGVGAIKGFAVALTIGII 489
>dbj|BAB04955.1| (AP001511) protein-export membrane protein [Bacillus halodurans]
Length = 437
Score = 74.9 bits (181), Expect = 2e-12
Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 8/228 (3%)
Query: 262 DEDMESFVRRVLRLYGPYRVGEGLATGRASTEVMISIGGSQNDLKARNDAQVVAVVLRSG 321
+E ++S+ ++ Y + + +VMI ++ + +A +L +G
Sbjct: 182 EEGVDSYAEEAMKASPKYISAASVNQPLFTRDVMIENRSGDFTVE---QTRFIADILNAG 238
Query: 322 SLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFS 381
SLP KL + + +S LGE + + AG + ++ + L+YR + + + T +
Sbjct: 239 SLPAKLDVLSSNSVSASLGEQAMERTVYAGFIGVALIFLYMLLYYRFMGMIATITLTVY- 297
Query: 382 EVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGIL 441
+ ++L I + + L LP IA +I +G VD I+ + + ++ +GK + S
Sbjct: 298 -IYLVLLIFNWMNAVLTLPGIAALILGVGMAVDANIITYERIKEEIRSGKSIM---SSFK 353
Query: 442 KRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGIL 489
R+ IL + TTI+A S L+ + ++GFA I+ IL+ +
Sbjct: 354 AGSRRSLSTILDANITTILAASVLYIYGTSSVQGFAVMLIVSILMSFV 401
>sp|Q53955|SECD_STRCO PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|1076081|pir||S52765 secD
protein - Streptomyces coelicolor
>gi|758288|emb|CAA59954.1| (X85969) secD [Streptomyces
coelicolor A3(2)]
Length = 570
Score = 74.5 bits (180), Expect = 3e-12
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 308 RNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYR 367
+ +AQ +A +L G+LP+ + + ++ LG + + LIAG L +V + +YR
Sbjct: 332 QEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR 391
Query: 368 KLK-IAIPVMFTSFSEVLIILG-IASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLG 425
L IA+ + S +I+ + I + L+LP++ G I AIG D IV + +
Sbjct: 392 GLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRD 451
Query: 426 DVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAF----TTI 481
++ G+ R + + RA IL S + +A + LF VG ++GFAF TT+
Sbjct: 452 EIREGR---TLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTL 508
Query: 482 LGILIGILITRP 493
L +++ L T+P
Sbjct: 509 LDVVVVFLFTKP 520
>emb|CAB70918.1| (AL137778) protein-export membrane protein [Streptomyces coelicolor
A3(2)]
Length = 570
Score = 74.5 bits (180), Expect = 3e-12
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 308 RNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYR 367
+ +AQ +A +L G+LP+ + + ++ LG + + LIAG L +V + +YR
Sbjct: 332 QEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR 391
Query: 368 KLK-IAIPVMFTSFSEVLIILG-IASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLG 425
L IA+ + S +I+ + I + L+LP++ G I AIG D IV + +
Sbjct: 392 GLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRD 451
Query: 426 DVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAF----TTI 481
++ G+ R + + RA IL S + +A + LF VG ++GFAF TT+
Sbjct: 452 EIREGR---TLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTL 508
Query: 482 LGILIGILITRP 493
L +++ L T+P
Sbjct: 509 LDVVVVFLFTKP 520
>sp|O26074|SECD_HELPY PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7430005|pir||F64713
protein-export membrane protein - Helicobacter pylori
(strain 26695) >gi|2314730|gb|AAD08588.1| (AE000652)
protein-export membrane protein (secD) [Helicobacter
pylori 26695]
Length = 503
Score = 74.1 bits (179), Expect = 3e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%)
Query: 298 IGGSQNDLKAR---NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAA 354
IGG + A +A+ LRSG++ + + I P LG+D + +IA +
Sbjct: 281 IGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEKRIIGPSLGKDSVKTSIIALVGG 340
Query: 355 LLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVD 414
++V + L+Y + + +I+ + +I L LP +AGI+ +G VD
Sbjct: 341 FILVMGFMVLYYS--MAGVIACLALVVNLFLIVAVMAIFGATLTLPGMAGIVLTVGIAVD 398
Query: 415 QQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFF----IILASASTTIVAMSFLFKFFV 470
I+I + + ++ + + GI K + + I S T+++A L+ +
Sbjct: 399 ANIIINERI-------REVLRENEGIAKAIHLGYINASRAIFDSNITSLIASVLLYAYGT 451
Query: 471 GGLRGFAFTTILGILIGIL 489
G ++GFA TT +GIL I+
Sbjct: 452 GAIKGFALTTGIGILASII 470
>sp|O51596|SECD_BORBU PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|2688574|gb|AAC66993.1|
(AE001166) protein-export membrane protein (secD)
[Borrelia burgdorferi]
Length = 586
Score = 74.1 bits (179), Expect = 3e-12
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 288 GRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQV 347
G A T +SI G D K +AQ +A+V ++ + PV + I+ + I P LG
Sbjct: 358 GYAITGGNVSIQGDSFDKK---EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLG 414
Query: 348 LIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIA 407
+ A AL +V + ++Y + ++ V +IL I S + L L SIAG+I
Sbjct: 415 IKASALALCLVFLFICVYYGLSGVVAGFSLVIYN-VFLILAILSAFNFTLTLTSIAGLIL 473
Query: 408 AIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFK 467
+G VD IVI + + ++ G++ + +AF I+ + TT +A+ FL
Sbjct: 474 TMGMAVDINIVIYERIKEEIREGRR---FENAFEAGFKKAFLSIMDANITTFIAVLFLTL 530
Query: 468 FFVGGLRGFAFTTILGILIGI 488
G ++GFA++ +GI+ +
Sbjct: 531 LGTGVIQGFAWSLSVGIVASL 551
>pir||C70181 protein-export membrane protein (secD) homolog - Lyme disease
spirochete
Length = 585
Score = 74.1 bits (179), Expect = 3e-12
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 288 GRASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQV 347
G A T +SI G D K +AQ +A+V ++ + PV + I+ + I P LG
Sbjct: 357 GYAITGGNVSIQGDSFDKK---EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLG 413
Query: 348 LIAGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIA 407
+ A AL +V + ++Y + ++ V +IL I S + L L SIAG+I
Sbjct: 414 IKASALALCLVFLFICVYYGLSGVVAGFSLVIYN-VFLILAILSAFNFTLTLTSIAGLIL 472
Query: 408 AIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFK 467
+G VD IVI + + ++ G++ + +AF I+ + TT +A+ FL
Sbjct: 473 TMGMAVDINIVIYERIKEEIREGRR---FENAFEAGFKKAFLSIMDANITTFIAVLFLTL 529
Query: 468 FFVGGLRGFAFTTILGILIGI 488
G ++GFA++ +GI+ +
Sbjct: 530 LGTGVIQGFAWSLSVGIVASL 550
>gb|AAD53945.1| (AF179925) general protein secretion pathway subunit SecD
[Citrobacter freundii]
Length = 615
Score = 73.4 bits (177), Expect = 6e-12
Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Query: 309 NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRK 368
N+A+ ++++LR+G+L + I I P LG +Q L A +A L+V +I+++ +
Sbjct: 415 NEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVV--SILFMIFFY 472
Query: 369 LKIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDV 427
K + + +++I+GI S++ L +P IAGI+ + VD ++I + + ++
Sbjct: 473 KKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL 532
Query: 428 TAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIG 487
+ G+ + I + AF I + TT++ + L+ G ++GFA TT +G+
Sbjct: 533 SNGRS---VQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 589
Query: 488 ILITRPAYGEIAKVLIGERR 507
+ I +L G +R
Sbjct: 590 MFTAIVGTRAIVNLLYGGKR 609
>pir||H81312 protein-export membrane protein Cj1093c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968527|emb|CAB73348.1|
(AL139077) protein-export membrane protein
[Campylobacter jejuni]
Length = 526
Score = 73.0 bits (176), Expect = 8e-12
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 298 IGGSQNDLKA---RNDAQVVAVVLRSGSL--PVKLSIERIDYISPKLGEDFKRQVLIAGI 352
IGG + + +A+ VAV LRSG+L PVKL +R I P LG D + +IA I
Sbjct: 305 IGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQR--SIGPSLGADSIKMSMIALI 362
Query: 353 AALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTG 412
A + + + ++Y I + VL+++ + ++ L LP +AG++ +G
Sbjct: 363 GASVFIVVFMMMYYGVAGIFANI--AMLVNVLVVVAVMAMFGATLTLPGMAGLVLTVGMA 420
Query: 413 VDQQIVITD---ELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFF 469
VD ++I + ELL D + R I + A I+ S T++V L+ +
Sbjct: 421 VDANVIINERIRELLRD------GVNIRVSIEQGYKNAMSAIIDSNITSLVTSVALYAYG 474
Query: 470 VGGLRGFAFTTILGILIGIL 489
G ++GFA T +GI++ ++
Sbjct: 475 TGAVKGFAVTLGIGIVVSMI 494
>pir||JQ0696 secretion protein secD - Escherichia coli
>gi|581230|emb|CAA39634.1| (X56175) secD protein
[Escherichia coli]
Length = 615
Score = 72.6 bits (175), Expect = 1e-11
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Query: 309 NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRK 368
N+A+ ++++LR+G+L + I I P LG Q L A +A LLV + + Y+
Sbjct: 415 NEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK- 473
Query: 369 LKIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDV 427
K + + +++I+GI S++ L +P IAGI+ + VD ++I + + ++
Sbjct: 474 -KFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL 532
Query: 428 TAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIG 487
+ G+ + I + AF I + TT++ + L+ G ++GFA TT +G+
Sbjct: 533 SNGR---TVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 589
Query: 488 ILITRPAYGEIAKVLIGERR 507
+ I +L G +R
Sbjct: 590 MFTAIVGTRAIVNLLYGGKR 609
>sp|P19673|SECD_ECOLI PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|7430007|pir||H64769
preprotein translocase chain secD [validated] -
Escherichia coli >gi|1773092|gb|AAB40164.1| (U82664)
protein-export membrane protein SecD [Escherichia coli]
>gi|1786609|gb|AAC73511.1| (AE000147) protein secretion;
membrane protein, part of the channel [Escherichia coli
K12]
Length = 615
Score = 72.6 bits (175), Expect = 1e-11
Identities = 52/200 (26%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Query: 309 NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRK 368
N+A+ ++++LR+G+L + I I P LG Q L A +A LLV + + Y+
Sbjct: 415 NEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK- 473
Query: 369 LKIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDV 427
K + + +++I+GI S++ L +P IAGI+ + VD ++I + + ++
Sbjct: 474 -KFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL 532
Query: 428 TAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIG 487
+ G+ + I + AF I + TT++ + L+ G ++GFA TT +G+
Sbjct: 533 SNGR---TVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 589
Query: 488 ILITRPAYGEIAKVLIGERR 507
+ I +L G +R
Sbjct: 590 MFTAIVGTRAIVNLLYGGKR 609
>sp|Q9ZFF8|SECD_SALCH PROTEIN-EXPORT MEMBRANE PROTEIN SECD >gi|3983168|gb|AAC83834.1|
(AF100611) SecD [Salmonella choleraesuis]
Length = 615
Score = 72.6 bits (175), Expect = 1e-11
Identities = 51/200 (25%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Query: 309 NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRK 368
N+A+ ++++LR+G+L + I I P LG +Q L A +A L+V +I+++ +
Sbjct: 415 NEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVV--SILFMIFFY 472
Query: 369 LKIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDV 427
K + + +++I+GI S++ L +P IAGI+ + VD ++I + + ++
Sbjct: 473 KKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL 532
Query: 428 TAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIG 487
+ G+ + I + AF I + TT++ + L+ G ++GFA TT +G+
Sbjct: 533 SNGR---TVQQAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATS 589
Query: 488 ILITRPAYGEIAKVLIGERR 507
+ I +L G +R
Sbjct: 590 MFTAIIGTRAIVNLLYGGKR 609
>sp|Q9ZJ66|SECD_HELPJ PROTEIN-EXPORT MEMBRANE PROTEIN >gi|7445414|pir||D71805
protein-export membrane protein - Helicobacter pylori
(strain J99) >gi|4156069|gb|AAD07024.1| (AE001567)
PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 526
Score = 72.6 bits (175), Expect = 1e-11
Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 298 IGGSQNDLKAR---NDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAA 354
IGG + A +A+ LRSG++ + + + P LG+D + +IA +
Sbjct: 303 IGGGSGQISGNFSVAQASDLAIALRSGAMNAPIQVLEKRIVGPSLGKDSIKTSIIALVGG 362
Query: 355 LLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVD 414
++V + L+Y + + + +I+ + +I L LP +AGI+ +G VD
Sbjct: 363 FILVMGFMALYYSMAGVIACMALVV--NLFLIVAVMAIFGATLTLPGMAGIVLTVGIAVD 420
Query: 415 QQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFF----IILASASTTIVAMSFLFKFFV 470
I+I + + + G+ G++K + + I S T+++A L+ +
Sbjct: 421 ANIIINERIREVLREGE-------GVVKAIHLGYINASRAIFDSNITSLIASVLLYAYGT 473
Query: 471 GGLRGFAFTTILGILIGIL 489
G ++GFA TT +GIL I+
Sbjct: 474 GAIKGFALTTGIGILASII 492
>pir||H81178 protein-export membrane protein SecD NMB0607 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225837|gb|AAF41034.1| (AE002416) protein-export
membrane protein SecD [Neisseria meningitidis MC58]
Length = 618
Score = 71.8 bits (173), Expect = 2e-11
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 290 ASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLI 349
A T + I GS +A + +++LR+GSL + I I P LG++ +
Sbjct: 388 AITGGRVEISGSMTTAEAND----TSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFH 443
Query: 350 AGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAI 409
+ + +V A + ++YR + + ++ +L ++GI S ++ L LP +A + +
Sbjct: 444 STLWGFAIVAAFMVVYYRLMGFFSTIALSA--NILFLIGILSAMQATLTLPGMAALALTL 501
Query: 410 GTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFF 469
G +D ++I + + ++ AG + + I A+ I+ S T+++A L F
Sbjct: 502 GMAIDSNVLINERIREELRAG---VPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFG 558
Query: 470 VGGLRGFAFTTILGILIGILITRPAYGEIAKVLIGERR 507
G +RGFA LGIL + + + + + G RR
Sbjct: 559 SGPVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRR 596
>pir||C81926 probable protein-export membrane protein NMA0812 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379531|emb|CAB84094.1| (AL162754) putative
protein-export membrane protein [Neisseria meningitidis
Z2491]
Length = 618
Score = 71.8 bits (173), Expect = 2e-11
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 290 ASTEVMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLI 349
A T + I GS +A + +++LR+GSL + I I P LG++ +
Sbjct: 388 AITGGRVEISGSMTTAEAND----TSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFH 443
Query: 350 AGIAALLVVGAIVYLHYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAI 409
+ + +V A + ++YR + + ++ +L ++GI S ++ L LP +A + +
Sbjct: 444 STLWGFAIVAAFMVVYYRLMGFFSTIALSA--NILFLIGILSAMQATLTLPGMAALALTL 501
Query: 410 GTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFF 469
G +D ++I + + ++ AG + + I A+ I+ S T+++A L F
Sbjct: 502 GMAIDSNVLINERIREELRAG---VPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFG 558
Query: 470 VGGLRGFAFTTILGILIGILITRPAYGEIAKVLIGERR 507
G +RGFA LGIL + + + + + G RR
Sbjct: 559 SGPVRGFAVVHCLGILTSMYSSVVVFRALVNLWYGRRR 596
>pir||H69704 protein-export membrane protein secF - Bacillus subtilis
>gi|2635229|emb|CAB14724.1| (Z99118) protein-export
membrane protein [Bacillus subtilis]
Length = 571
Score = 71.4 bits (172), Expect = 2e-11
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 310 DAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKL 369
+A+ +A +L +G+LPVKL+ + + + G+ + AGI + ++ + +YR
Sbjct: 55 EAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLP 114
Query: 370 KIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTA 429
+ + + + + I L I + L LP IA +I +G VD I+ + + ++
Sbjct: 115 GLIAVITLSVY--IYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKL 172
Query: 430 GKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGIL 489
GK RS R+F I + TTI+A LF F ++GFA IL IL +
Sbjct: 173 GKS---VRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 229
>gb|AAC31122.1| (AF024506) SecDF protein [Bacillus subtilis]
Length = 737
Score = 71.4 bits (172), Expect = 2e-11
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 310 DAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKL 369
+A+ +A +L +G+LPVKL+ + + + G+ + AGI + ++ + +YR
Sbjct: 221 EAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLP 280
Query: 370 KIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTA 429
+ + + + + I L I + L LP IA +I +G VD I+ + + ++
Sbjct: 281 GLIAVITLSVY--IYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKL 338
Query: 430 GKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGIL 489
GK RS R+F I + TTI+A LF F ++GFA IL IL +
Sbjct: 339 GKS---VRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 395
>gb|AAD44348.1| (AF163861) SecD protein [Enterobacter aerogenes]
Length = 615
Score = 70.6 bits (170), Expect = 4e-11
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 6/199 (3%)
Query: 310 DAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYLHYRKL 369
+A+ ++++LR+G+L + I I P LG +Q L A +A L+V +I+++ +
Sbjct: 416 EARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVV--SILFMIFFYK 473
Query: 370 KIAIPVMFTSFSEVLIILGIASIIRW-NLDLPSIAGIIAAIGTGVDQQIVITDELLGDVT 428
K + + +++I+GI S+I L +P IAGI+ + VD ++I + + +++
Sbjct: 474 KFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELS 533
Query: 429 AGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIGI 488
G+ + I + AF I + TT++ + L+ G ++GFA TT +GI +
Sbjct: 534 NGR---TVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSM 590
Query: 489 LITRPAYGEIAKVLIGERR 507
I +L G +R
Sbjct: 591 FTAIVGTRAIVNLLYGGKR 609
>pir||F83169 secretion protein SecD PA3821 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949995|gb|AAG07208.1|AE004799_14
(AE004799) secretion protein SecD [Pseudomonas
aeruginosa]
Length = 620
Score = 69.9 bits (168), Expect = 7e-11
Identities = 54/192 (28%), Positives = 96/192 (49%), Gaps = 9/192 (4%)
Query: 305 LKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIAALLVVGAIVYL 364
L ++ +A++LR+G L + I P LG D + + A + +L V + +
Sbjct: 417 LDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIV 476
Query: 365 HYRKLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTGVDQQIVITDELL 424
YR + I + +F+ V+++ + SI+ L LP IAGI+ +G VD ++I +
Sbjct: 477 IYRFFGV-IATVALAFNMVMLV-ALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIR 534
Query: 425 GDVTAGKKRIVKRSGILKRMGRAFFIILASASTTIVAMSFLFKFFVGGLRGFAFTTILGI 484
++ G V+R+ I + RAF IL + T+++ L+ G ++GFA T LGI
Sbjct: 535 EELANGMS--VQRA-IHEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGI 591
Query: 485 L----IGILITR 492
+ I++TR
Sbjct: 592 ITSMFTAIMVTR 603
>pir||A81179 protein-export membrane protein SecF NMB0608 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7225838|gb|AAF41035.1| (AE002416) protein-export
membrane protein SecF [Neisseria meningitidis MC58]
>gi|7379532|emb|CAB84095.1| (AL162754) putative
protein-export membrane protein [Neisseria meningitidis
Z2491]
Length = 311
Score = 69.5 bits (167), Expect = 9e-11
Identities = 50/201 (24%), Positives = 98/201 (47%), Gaps = 15/201 (7%)
Query: 294 VMISIGGSQNDLKARNDAQVVAVVLRSGSLPVKLSIERIDYISPKLGEDFKRQVLIAGIA 353
+MI + + A+ QV+ ++ + +++ ++++I P++GE+ L+A
Sbjct: 87 IMIRLPNKEGVTSAQLSNQVMDLLKKDSP---DVTLRQVEFIGPQVGEELVSNGLMA--L 141
Query: 354 ALLVVGAIVYLHYR-KLKIAIPVMFTSFSEVLIILGIASIIRWNLDLPSIAGIIAAIGTG 412
+V+G I+YL R + + A+ + + +++IILG + +W L +AGI+A +G
Sbjct: 142 GFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGCFAFFQWEFSLTVLAGILAVLGYS 201
Query: 413 VDQQIVITDELLGDVTAGKKR-----IVKRSGILKRMGRAFFIILASASTTIVAMSFLFK 467
V++ +V+ D + + R V + I M R I+ ST + +S L
Sbjct: 202 VNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATMSRT---IITHGSTEAMVVSMLV- 257
Query: 468 FFVGGLRGFAFTTILGILIGI 488
F L GF+ +GI+ GI
Sbjct: 258 FGGAALHGFSMALTIGIVFGI 278
>pir||E83169 secretion protein SecF PA3820 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949994|gb|AAG07207.1|AE004799_13
(AE004799) secretion protein SecF [Pseudomonas
aeruginosa]
Length = 306
Score = 69.5 bits (167), Expect = 9e-11
Identities = 46/216 (21%), Positives = 108/216 (49%), Gaps = 20/216 (9%)
Query: 284 GLATGRASTEVMISIGGSQNDLKARNDAQ------VVAVVLRSGSLPVKLSIERIDYISP 337
G G + ++ G D+ R ++ VA L+ +++R++Y+ P
Sbjct: 64 GQLVGAGYEDAVVQSFGDARDVLVRMPSEDPELGKKVATALQQADAGNPANLKRVEYVGP 123
Query: 338 KLGEDFKRQVLIAGIAALLVVGAIV-YLHYR-KLKIAIPVMFTSFSEVLIILGIASIIRW 395
++GE+ + Q G+ LL +G I+ Y+ +R + K A+ + + + +I++G+ S +
Sbjct: 124 QVGEELRDQ---GGLGMLLALGGILLYVGFRFQWKFALGAILSLVHDAIIVMGVLSFFQV 180
Query: 396 NLDLPSIAGIIAAIGTGVDQQIVITDELLGDVTAGKKRIVKRSGILKRM----GRAFFII 451
DL +A ++A +G ++ IVI D + + R+++++ +++ + +
Sbjct: 181 TFDLTVLAAVLAVVGYSLNDTIVIFDRVRENF-----RVLRKADLVENLNISTSQTLLRT 235
Query: 452 LASASTTIVAMSFLFKFFVGGLRGFAFTTILGILIG 487
+A++ +T++A++ L F L GF+ +G++ G
Sbjct: 236 IATSVSTLLAIAALLFFGGDNLFGFSIALFVGVMAG 271
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.141 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168856821
Number of Sequences: 2977
Number of extensions: 6862107
Number of successful extensions: 21116
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 20990
Number of HSP's gapped (non-prelim): 82
length of query: 507
length of database: 189,106,746
effective HSP length: 58
effective length of query: 449
effective length of database: 154,394,500
effective search space: 69323130500
effective search space used: 69323130500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 167 (69.5 bits)