BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1178 (trkA) DE:TRK potassium uptake system protein (trkA)
         (227 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75029 trk potassium uptake system protein (trka) PAB1178 -...   446  e-124
sp|O57719|TRKA_PYRHO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO...   425  e-118
sp|Q58505|TRKA_METJA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO...   159  3e-38
pir||B69036 TRK system potassium uptake protein TrkA - Methanoba...   139  3e-32
sp|O27333|TRKA_METTH TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO...   139  3e-32
gb|AAG20882.1| (AE005156) Vng6223c [Halobacterium sp. NRC-1]          112  3e-24
gi|11498444 TRK potassium uptake system protein (trkA-2) [Archae...   108  8e-23
gb|AAG18790.1| (AE004983) TRK potassium uptake system protein; T...   101  6e-21
gb|AAG20878.1| (AE005155) TRK potassium uptake system protein; T...   100  2e-20
pir||E83643 potassium uptake protein TrkA PA0016 [imported] - Ps...    99  4e-20
gb|AAG20112.1| (AE005090) TRK potassium uptake system protein; T...    98  7e-20
gb|AAG20842.1| (AE005152) TRK potassium uptake system protein; T...    97  2e-19
gb|AAG20899.1| (AE005157) TRK potassium uptake system protein; T...    96  3e-19
gb|AAG19633.1| (AE005052) TRK potassium uptake system protein; T...    93  2e-18
sp|P39449|TRKA_METMA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO...    90  2e-17
sp|P39448|TRKA_VIBAL TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g...    87  2e-16
pir||T45222 heat shock protein trkA [imported] - Methanosarcina ...    86  3e-16
pir||F82372 potassium uptake protein TrkA VC0043 [imported] - Vi...    86  3e-16
sp|P23868|TRKA_ECOLI TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g...    85  5e-16
sp|O07194|TRKA_MYCTU TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g...    85  7e-16
sp|Q53949|TRKA_STRCO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO...    85  9e-16
sp|P39445|TRKA_SALTY TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g...    83  2e-15
pir||D81063 Trk system potassium uptake protein TrkA NMB1614 [im...    78  1e-13
gb|AAA88557.1| (M29790) unknown protein [Streptomyces coelicolor...    77  2e-13
sp|P71354|TRKA_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g...    73  4e-12
pir||G70430 conserved hypothetical protein aq_1503 - Aquifex aeo...    73  4e-12
pir||G75284 probable potassium channel - Deinococcus radiodurans...    72  6e-12
pir||F70529 probable trkA protein - Mycobacterium tuberculosis (...    71  1e-11
pir||S76263 hypothetical protein - Synechocystis sp. (strain PCC...    70  2e-11
pir||F70327 conserved hypothetical protein aq_303 - Aquifex aeol...    69  3e-11

>pir||C75029 trk potassium uptake system protein (trka) PAB1178 - Pyrococcus
           abyssi (strain Orsay) >gi|5459187|emb|CAB50673.1|
           (AJ248288) TRK potassium uptake system protein (trkA)
           [Pyrococcus abyssi]
           Length = 227
           
 Score =  446 bits (1134), Expect = e-124
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN
Sbjct: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI
Sbjct: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
           VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI
Sbjct: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180

Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
           IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE
Sbjct: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227


>sp|O57719|TRKA_PYRHO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           >gi|7450646|pir||H71214 hypothetical protein PH1984 -
           Pyrococcus horikoshii >gi|3258428|dbj|BAA31111.1|
           (AP000007) 228aa long hypothetical protein [Pyrococcus
           horikoshii]
           Length = 228
           
 Score =  425 bits (1082), Expect = e-118
 Identities = 211/227 (92%), Positives = 224/227 (97%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MYI+IMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEY+SGLVIEGDATDQKVLEN
Sbjct: 1   MYIVIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYISGLVIEGDATDQKVLEN 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           ANIKNA+AFAALTG+DDANILACILAKHLNP IMTILRITDPGKKKIFE+VKELK YFDI
Sbjct: 61  ANIKNANAFAALTGKDDANILACILAKHLNPNIMTILRITDPGKKKIFEDVKELKTYFDI 120

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
           VVSPEDIAANYIFRTLVTPGF+RVLLPREGAEIIQFQ++EDCEVAGKP+KELNLPKDSLI
Sbjct: 121 VVSPEDIAANYIFRTLVTPGFNRVLLPREGAEIIQFQIDEDCEVAGKPVKELNLPKDSLI 180

Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
           IAVYDEKGNL IPSGDT+IPKKGQVIIFAKNSALQ+VKKIMEKK++E
Sbjct: 181 IAVYDEKGNLTIPSGDTIIPKKGQVIIFAKNSALQEVKKIMEKKKKE 227


>sp|Q58505|TRKA_METJA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           >gi|2129328|pir||H64437 TRK system potassium uptake
           protein A - Methanococcus jannaschii
           >gi|1591749|gb|AAB99108.1| (U67553) TRK system potassium
           uptake protein (trkA) [Methanococcus jannaschii]
           Length = 218
           
 Score =  159 bits (397), Expect = 3e-38
 Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 8/221 (3%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MYIII G GR+G  +A+ L  +GHD+ +I+++++  ++ S  +  LVI GD T  K LE+
Sbjct: 1   MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLED 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A I++AD + A+TG+++ N+++ +LAK       TI RI++   K +FE +       D+
Sbjct: 61  AGIEDADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLG-----VDV 114

Query: 121 VVSPEDIAANYIFRTLVTPG-FDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
           VVSPE IAANYI + +  PG  D  ++ R  AEI++F + E  +V  K IKEL  P+D L
Sbjct: 115 VVSPELIAANYIEKLIERPGILDLAIVGRGEAEILEFIIPEKAKVVNKKIKELGRPQDYL 174

Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
           IIA+YD    L IPSGDT +    +V++  K  A   ++K+
Sbjct: 175 IIAIYD-GDELKIPSGDTELKSGDRVLVLVKKDAADAIRKM 214


>pir||B69036 TRK system potassium uptake protein TrkA - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622379|gb|AAB85754.1| (AE000893) TRK system
           potassium uptake protein TrkA [Methanobacterium
           thermoautotrophicum]
           Length = 218
           
 Score =  139 bits (346), Expect = 3e-32
 Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 11/221 (4%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MY++IMG GR+G  +A +L S+GHDV +IE         +  +  LVI G+ TD K LE 
Sbjct: 3   MYVVIMGGGRVGLTLANLLISDGHDVTLIENEETLCANAAVELDALVICGNGTDIKTLEE 62

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
           ANI NAD F A TG D+AN+L+CIL +  + PKI  I R+++P  ++ F++V       D
Sbjct: 63  ANISNADVFVAATGNDEANLLSCILVREYSIPKI--IARVSNPDHEEAFKKVG-----ID 115

Query: 120 IVVSPEDIAANYIFRTLVTPGF-DRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDS 178
            V+SPE  AA Y+ + +  P   D ++L    AEI+  ++    +V GK + +++     
Sbjct: 116 HVISPERTAAGYLEKLITRPKVADLIVLGHGDAEILDMEIRSS-KVVGKRVGDVSPTDKY 174

Query: 179 LIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKK 219
           +I+A+Y+  G+L+IP  D V+ +  +V +  K  A+++  +
Sbjct: 175 IIVAIYN-NGDLIIPQPDMVLERGTKVSVLVKTDAVKEATR 214


>sp|O27333|TRKA_METTH TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           Length = 216
           
 Score =  139 bits (346), Expect = 3e-32
 Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 11/221 (4%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MY++IMG GR+G  +A +L S+GHDV +IE         +  +  LVI G+ TD K LE 
Sbjct: 1   MYVVIMGGGRVGLTLANLLISDGHDVTLIENEETLCANAAVELDALVICGNGTDIKTLEE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
           ANI NAD F A TG D+AN+L+CIL +  + PKI  I R+++P  ++ F++V       D
Sbjct: 61  ANISNADVFVAATGNDEANLLSCILVREYSIPKI--IARVSNPDHEEAFKKVG-----ID 113

Query: 120 IVVSPEDIAANYIFRTLVTPGF-DRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDS 178
            V+SPE  AA Y+ + +  P   D ++L    AEI+  ++    +V GK + +++     
Sbjct: 114 HVISPERTAAGYLEKLITRPKVADLIVLGHGDAEILDMEIRSS-KVVGKRVGDVSPTDKY 172

Query: 179 LIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKK 219
           +I+A+Y+  G+L+IP  D V+ +  +V +  K  A+++  +
Sbjct: 173 IIVAIYN-NGDLIIPQPDMVLERGTKVSVLVKTDAVKEATR 212


>gb|AAG20882.1| (AE005156) Vng6223c [Halobacterium sp. NRC-1]
           Length = 217
           
 Score =  112 bits (278), Expect = 3e-24
 Identities = 69/218 (31%), Positives = 113/218 (51%), Gaps = 10/218 (4%)

Query: 4   IIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENANI 63
           +I G G++G   A  L S GHDV +IE + +R  E+S+   G VI GDAT   +L  A++
Sbjct: 8   VIAGGGQVGLQAAGNLSSLGHDVVLIEPDEQRVAELSDAYVGPVIHGDATRPSILTQADL 67

Query: 64  KNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVVS 123
            +ADA AALT    AN+  C+ A+HLNP I T+ R  D    + +EEV       D  + 
Sbjct: 68  DDADAIAALTDDTSANLAICMEAQHLNPAIQTLAR-ADTQCNEEYEEV------VDATLL 120

Query: 124 PEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLIIAV 183
           P+ +  +Y    L       ++ P    +II+  V E   VAG+ + E+ LP+ SL+I+ 
Sbjct: 121 PKYLGGDYAADMLTGEDVRTLVYPTSDLDIIEISVAESAPVAGRRLDEIALPEGSLLIST 180

Query: 184 YDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
            D +    +   + V+  + + ++  +     +V+ +M
Sbjct: 181 ADREH---LAGPEMVLEPERRYVLAVEADVADEVRDLM 215


>gi|11498444 TRK potassium uptake system protein (trkA-2) [Archaeoglobus
           fulgidus] >gi|7388322|sp|O29420|TRKA_ARCFU TRK SYSTEM
           POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           >gi|7450649|pir||F69354 TRK potassium uptake system
           protein (trkA-2) homolog - Archaeoglobus fulgidus
           >gi|2649767|gb|AAB90401.1| (AE001046) TRK potassium
           uptake system protein (trkA-2) [Archaeoglobus fulgidus]
           Length = 436
           
 Score =  108 bits (266), Expect = 8e-23
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 6/221 (2%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M I+I GAG +G  +A  L +  HDV IIE +  R   +SE +  + I G+A + KVL +
Sbjct: 1   MRIVIAGAGEVGYHLAMSL-APNHDVIIIEKDVSRFERVSE-LDVVAINGNAANMKVLRD 58

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A ++ AD F A+TG D+ N+L+ + AK +  K   I+R+ +P +      VKE    +D+
Sbjct: 59  AGVERADVFLAVTGNDEVNLLSGLAAKKVGAK-NVIVRVENP-EYVDRPIVKEHPLGYDV 116

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
           ++ P+   A    R +  PG   V+    G  E+I+ QV E  +  GK I +L LP++ +
Sbjct: 117 LICPQLSLAQEAARLIGIPGAIEVVTFSGGKVEMIELQVMEGSKADGKAIADLYLPQNVV 176

Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
           I ++Y   G++ IP GDTV+    +V I +K   ++ +K I
Sbjct: 177 IASIY-RNGHIEIPRGDTVLRAGDRVAIVSKTEDVEMLKGI 216


 Score = 99.8 bits (245), Expect = 2e-20
 Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGL-VIEGDATDQKVLENA 61
           + I GAG IG+  A++L      V +IE + ER   +S  + G+ ++ GDATD + L   
Sbjct: 225 VTIFGAGTIGSYTAKILAKGMTSVKLIESSMERCEALSGELEGVRIVCGDATDIEFLIEE 284

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
            I  +DA  A T  D+ N+L  +L+K+L  +I  I ++      K+FE V       D+ 
Sbjct: 285 EIGKSDAVLAATESDEKNLLISLLSKNLGARI-AIAKVEKREYVKLFEAVG-----VDVA 338

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLII 181
           ++P  +  N + + L T   +  L   EG  +++  V  +  + GK +K+L LPKD++I 
Sbjct: 339 LNPRSVTYNEVSKLLRTMRIE-TLAEIEGTAVVEVVV-RNTRLVGKALKDLPLPKDAIIG 396

Query: 182 AVYDEKGN-LVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
           A+   +GN  +IP GDT I  + ++++FAK   ++ +++I
Sbjct: 397 AIV--RGNECLIPRGDTTIEYEDRLLVFAKWDEIEKIEEI 434


>gb|AAG18790.1| (AE004983) TRK potassium uptake system protein; TrkA1
           [Halobacterium sp. NRC-1]
           Length = 228
           
 Score =  101 bits (250), Expect = 6e-21
 Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 13/205 (6%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MY+II+GAG IGT +  +    G++VA+IE +  RA   ++    LV+  DAT +  L +
Sbjct: 1   MYLIIVGAGDIGTPLIDVATRSGNEVAVIERDDSRAARAADDYDCLVLHDDATIKDTLAD 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
           A    ADA  + T +D  NI+ C+LA   + P I+++  + +P    +FE +        
Sbjct: 61  AGAGRADAIISTTDQDATNIMVCLLAAEFDIPAILSV--VHNPEHMGVFERIG-----VS 113

Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKEL----NLP 175
            + +P+ + A Y++R +  P     +   + AE+ +  V +   VAG  ++E      LP
Sbjct: 114 TMENPQQLIAEYLYRAVTRPAIVDYMRIGDHAEVFEISVTDSAPVAGTTLQEAANTGALP 173

Query: 176 KDSLIIAV-YDEKGNLVIPSGDTVI 199
            D L++A+  D  G+ + P GDTVI
Sbjct: 174 DDVLVVAIERDGDGDPITPRGDTVI 198


>gb|AAG20878.1| (AE005155) TRK potassium uptake system protein; TrkA3
           [Halobacterium sp. NRC-1]
           Length = 217
           
 Score = 99.8 bits (245), Expect = 2e-20
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 9/204 (4%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENAN 62
           +II G GR+G   A +L   GHDV IIE +     +I++     VIEGDAT+  ++E A 
Sbjct: 7   LIIAGGGRVGFQTAELLADRGHDVTIIERDTRVVDDIADQWMATVIEGDATNPAIIEQAG 66

Query: 63  IKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVV 122
           +  AD  AALTG    N+  C+ A  L P I TI RI D G +  +       R+ D VV
Sbjct: 67  VDRADGIAALTGETGLNLAVCLAAAELTPSIRTIARI-DHGVRDSY------TRFVDAVV 119

Query: 123 SPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLIIA 182
            PE   A      ++      +       E++  +V +    AGK ++++  P  ++II+
Sbjct: 120 FPERAGARVAANEIIGDDVQTLADITGDLELMLVRVADGAPAAGKQLRDVRFPAGTVIIS 179

Query: 183 VYDEKGNLVIPSGDTVIPKKGQVI 206
             D  G  +     T+ P    +I
Sbjct: 180 GAD--GQRIARPDTTLTPGSRYII 201


>pir||E83643 potassium uptake protein TrkA PA0016 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9945835|gb|AAG03406.1|AE004441_7 (AE004441)
           potassium uptake protein TrkA [Pseudomonas aeruginosa]
           Length = 457
           
 Score = 99.1 bits (243), Expect = 4e-20
 Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++G  +A  L SE +D+ +++ + +R R++ + +    ++G A+   VL  
Sbjct: 1   MKIIILGAGQVGGTLAEHLASEANDITVVDTDGDRLRDLGDRLDIRTVQGKASFPTVLRQ 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A   +AD   A+T  D+ N++AC +A  L      I R+ +P                D+
Sbjct: 61  AGADDADMLVAVTNSDETNMVACQVAYTLFNTPTKIARVREPAYLTRTGLFDNEAIPVDV 120

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL--NLPK- 176
           ++SPE +  NYI R +  PG  +V+   EG A+++  +      + G+ +++L  ++P  
Sbjct: 121 LISPEQVVTNYIKRLIEHPGALQVIDFAEGKAQLVGIKAYYGGPLVGQELRQLREHMPNV 180

Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
           D+ + A+Y  +   +IP GDTVI    +V   A  + ++ V   M +
Sbjct: 181 DTRVAAIY-RRNRPIIPQGDTVIEADDEVFFIAAKAHIRAVMGEMRR 226


 Score = 84.7 bits (206), Expect = 9e-16
 Identities = 68/227 (29%), Positives = 116/227 (50%), Gaps = 16/227 (7%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLENA 61
           III G G +G  +A  +ES  + V IIE +  R R +S+ + S +V+ G A+D+ +L   
Sbjct: 234 IIIAGGGNVGERLAEAIESR-YQVKIIERSPLRCRHLSDTLDSTIVLNGSASDRDLLLEE 292

Query: 62  NIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           NI   D F ALT  D+ANI++ +LAK L   K+MT+  I +P    + +  +      DI
Sbjct: 293 NIGETDVFLALTNDDEANIMSSLLAKRLGASKVMTL--INNPAYVDLVQGGE-----IDI 345

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGA----EIIQFQVNEDCEVAGKPIKELNLPK 176
            +SP+      +   +     + V   R GA    E++     +  +V G+ I E+ LP 
Sbjct: 346 AISPQLATIGTLLAHVRRGDIESVHSLRRGAAEAIEVVAHGDAKSSKVIGRSINEIKLPP 405

Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIF-AKNSALQDVKKIME 222
            + I A+  ++  ++I  GDT I     V++F      ++DV+++ +
Sbjct: 406 GTTIGALVRDE-EVLIAHGDTRIESGDHVLLFLVDKKYIRDVERLFQ 451


>gb|AAG20112.1| (AE005090) TRK potassium uptake system protein; TrkA6
           [Halobacterium sp. NRC-1]
           Length = 259
           
 Score = 98.3 bits (241), Expect = 7e-20
 Identities = 63/221 (28%), Positives = 113/221 (50%), Gaps = 6/221 (2%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M I+I+GAGR+G+  AR++ +E H V +IE + +RA E +      V+EGD T +  L +
Sbjct: 35  MDIVIVGAGRVGSRTARVVTNEDHAVTVIEQDYDRA-ERARTEGFDVVEGDGTSEDTLLD 93

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A I  ADA  ALT   + N +AC++  H + +  T+LRI +  ++ I+ +  +     D 
Sbjct: 94  AGIDTADAIGALTSDLNTNFIACMVGNHHDCR--TVLRIDEDYREDIYRKYAD---EVDE 148

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
           +V PE + A      L+      +    E  +++Q  V ++  + G  I EL LP  + +
Sbjct: 149 IVYPERLGAIGAKNALLGGNVTAIADLAEHLQVVQLTVTDEAPMRGYSISELELPAGARL 208

Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
           +A      +L +P     +    ++ + A+   L  V++I+
Sbjct: 209 LAFGKHDASLALPLPSETLETGDRIAVLAEFDTLDSVRQIL 249


>gb|AAG20842.1| (AE005152) TRK potassium uptake system protein; TrkA2
           [Halobacterium sp. NRC-1]
           Length = 234
           
 Score = 97.1 bits (238), Expect = 2e-19
 Identities = 64/225 (28%), Positives = 113/225 (49%), Gaps = 16/225 (7%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M  +I+GAGRIG+ V  +       V +IE   ERA E     +  VI  DAT+++ L  
Sbjct: 1   MTTVIVGAGRIGSSVIELAADANIGVTVIEQEHERAHEFKADENCHVIHDDATERETLHE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKK-KIFEEVKELKRYFD 119
           A + NADA  A T +D  N++  +LA+ L  +  T++ +    +   +F ++        
Sbjct: 61  AEVGNADAIIATTDQDTTNLMVLMLARELGCE--TLVSVVHAEENIPLFRQLGA-----T 113

Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPRE---GAEIIQFQVNEDCEVAGKPIKELN--- 173
           I+ +P+ + A Y+FR    PG    +   +   GAE+ +  V +   + GK +++ +   
Sbjct: 114 IIENPQRLIAEYLFRGTHDPGIQGFMHVGDRDGGAEVFEISVADGAPIIGKTLEQADVAG 173

Query: 174 -LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDV 217
            LP   +++AV +  G ++IP G+T I     V +F+K   + +V
Sbjct: 174 FLPPSMVVVAV-ERDGEIIIPRGNTQIETDDLVTVFSKEGIINEV 217


>gb|AAG20899.1| (AE005157) TRK potassium uptake system protein; TrkA4
           [Halobacterium sp. NRC-1]
           Length = 232
           
 Score = 96.0 bits (235), Expect = 3e-19
 Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 12/225 (5%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M +II+GAG +G  +  +    G++V ++E +  RA EI++     V+  DATD+  +++
Sbjct: 1   MQVIIVGAGTVGAPLVDVATGSGNEVVVVEQDGGRANEIADAYDCAVLHADATDESTIQD 60

Query: 61  ANIKNADAFAALTGRDDANILACIL-AKHLNPKIMTILRITDPGKKKIFEEVKELKRYFD 119
           A    ADA    TGRD  N+  C+L A+H  P ++++L+   P  + +F E+        
Sbjct: 61  AGADRADALITTTGRDPTNLFVCLLGAEHDIPTVVSLLQ--RPAHRHLFAELGVY----- 113

Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN----LP 175
            V    D+AA  ++R    P     +     A + +  V  D  +A   + +      LP
Sbjct: 114 TVAGLHDLAAESLYRVARQPAVSESMPVAGDAAVFRITVGADAPIADTMLVDARSTGVLP 173

Query: 176 KDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
            D L++AV    G   I   +T I    +V +++      DV  +
Sbjct: 174 DDVLVVAVRTGDGEAEIARSETTITPGDEVTVYSSRGTTADVTAV 218


>gb|AAG19633.1| (AE005052) TRK potassium uptake system protein; TrkA5
           [Halobacterium sp. NRC-1]
           Length = 222
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 13/222 (5%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MYII++GAG IG+ V ++L    +++ +IE + + A ++S     LV+  DAT +  L +
Sbjct: 1   MYIIVVGAGDIGSQVIQLLTKSANEIVVIETDPDVADQVSRDYDCLVLNADATAKDTLVD 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A  + ADA    T RD  NI+  +LA  L+ +   +  + DP   ++F  +       ++
Sbjct: 61  AGSEKADAIITTTDRDPTNIMVMLLADELDIE-SKVSVVQDPDNMELFRRIG-----VNV 114

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN----LPK 176
           + +P+ +   Y+ R +  P     +     AE+ +  V ED  +A + +++ +    L  
Sbjct: 115 LENPQRLIGEYLVRAVQRPSIKDFMTLGGEAEVFEITVTEDAPLAEQTLQDADTNGLLGD 174

Query: 177 DSLIIAVYDEKGNLVI-PSGDTVIPKKGQVIIFAKNSALQDV 217
           D L++A+  E+G+ VI P G+T I     +  F+K+     V
Sbjct: 175 DVLVVAI--ERGDDVITPRGETTIHAGDLITAFSKHGVTSSV 214


>sp|P39449|TRKA_METMA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           >gi|629381|pir||S39806 trkA protein - Methanosarcina
           mazei >gi|414170|emb|CAA52360.1| (X74307) trkA
           [Methanosarcina mazei]
           Length = 406
           
 Score = 90.5 bits (221), Expect = 2e-17
 Identities = 64/232 (27%), Positives = 121/232 (51%), Gaps = 14/232 (6%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M  +I+GAG +G  +A+ L S  +DV II+ + E A+   E +  LVIEG+  + ++L  
Sbjct: 1   MKAVIIGAGEVGYHIAKAL-SPKNDVVIIDKDEEAAKRADE-LDVLVIEGNGANAEILSR 58

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPK------IMTILRITDPGKKKIFEEVKEL 114
             ++NAD   A+TG D+ NI+AC+ AK +           TI R+++P    I   V   
Sbjct: 59  V-LQNADLLVAVTGVDEVNIVACMTAKLIMKNKNGWKDTKTIARVSNP--DYIDSPVTSR 115

Query: 115 KRY-FDIVVSPEDIAANYIFRTLVTP-GFDRVLLPREGAEIIQFQVNEDCEVAGKPIKEL 172
            +   D+++ PE   A+ +   L +P   D  +       + +F ++ + ++ GK +++L
Sbjct: 116 AQVGVDLMICPELALASEVADILSSPSAIDAEMFAEGKVRMTEFAISPESKLVGKHMQDL 175

Query: 173 NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKK 224
            L    ++ AV+ E   ++IP GD +I     +++  K  +++D++ +   K
Sbjct: 176 KLADCCIVSAVFRE-DQIIIPHGDDLIKANDHMVVVGKPESMEDLESVFGSK 226


 Score = 90.1 bits (220), Expect = 2e-17
 Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 9/177 (5%)

Query: 3   IIIMGAGRIGTLVARMLESEGH-DVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLEN 60
           I+++G G +G  +A++++ E + D+ IIE ++ R  E++E + + LV+ GD TD  +L  
Sbjct: 233 ILLIGCGIVGMYLAKLIDKEENADLRIIEHSKSRCIEVAEILENALVLNGDGTDVSLLRE 292

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
            NI++ D   A+T  D+ N+L  +LAK L  K   I R        +FE V       D+
Sbjct: 293 ENIEDMDVVVAVTDSDEKNLLCSLLAKQLGAK-KVIARADRSDYLPLFEMVG-----IDM 346

Query: 121 VVSPEDIAANYIFRTLVTPGFDRV-LLPREGAEIIQFQVNEDCEVAGKPIKELNLPK 176
            VSP +   N + +  +  G   +  +  E AEII++  +E   + GKP+ ++  PK
Sbjct: 347 AVSPREATVNEVLKLTMGRGIQTLTTIEGERAEIIEYTASEKSRIVGKPLNKVKFPK 403


>sp|P39448|TRKA_VIBAL TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1073743|pir||S50220
           potassium transport protein trkA [validated] - Vibrio
           alginolyticus >gi|541661|dbj|BAA05838.1| (D28477) TrkA
           protein [Vibrio alginolyticus]
           >gi|3288670|dbj|BAA31228.1| (D86411) TrkA [Vibrio
           alginolyticus] >gi|1092506|prf||2024220A K transporter
           [Vibrio alginolyticus]
           Length = 458
           
 Score = 86.6 bits (211), Expect = 2e-16
 Identities = 60/233 (25%), Positives = 111/233 (46%), Gaps = 16/233 (6%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++G  +A  L  E +D+ I++ N +R RE+ +     V+ G A+   VL  
Sbjct: 1   MKIIILGAGQVGGTLAENLVGENNDITIVDNNADRLRELQDKYDLRVVNGHASHPDVLHE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
           A  ++AD   A+T  D+ N+ AC +A  L      + RI  P      E + E +  F  
Sbjct: 61  AGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRVARIRSP------EYLAEKEALFKS 114

Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL 172
                D +++PE++  +YI R +  PG  +V+    +   ++  +      + G  +  L
Sbjct: 115 GAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEQKVSLVAVKAYYGGPLVGNALSAL 174

Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
             ++P     +A    +G  + P G T+I    +V   A ++ ++ V   +++
Sbjct: 175 REHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHIRSVMSELQR 227


 Score = 83.9 bits (204), Expect = 1e-15
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 16/227 (7%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIE-GDATDQKVLENA 61
           I+I+G G IG  +A+ LE + + V +IE N +RA ++SE +   ++  GDA DQ++L   
Sbjct: 235 IMIVGGGNIGASLAKRLE-QNYSVKLIERNYQRAEKLSEELENTIVFCGDAADQELLSEE 293

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
           NI   D F ALT  D+ NI++ +LAK +  K + +L      ++  + ++ +     D+ 
Sbjct: 294 NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLI-----QRGAYVDLVQ-GGVIDVA 347

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
           +SP+    + +   +       V   R G AE I+   + D    +V G+ I ++ LP  
Sbjct: 348 ISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAVAHGDESTSKVVGRAIGDIKLPPG 407

Query: 178 SLIIAVYDEKGNLVIPSGD-TVIPKKGQVIIFAKNSA-LQDVKKIME 222
           + I A+   +G  V+ + D TVI +   V++F  N   + DV+ + +
Sbjct: 408 TTIGAIV--RGEEVLIAHDRTVIEQDDHVVMFLVNKKYVSDVEALFQ 452


>pir||T45222 heat shock protein trkA [imported] - Methanosarcina thermophila
           (fragment) >gi|5824108|emb|CAB53764.1| (AJ010400) TrkA
           protein [Methanosarcina thermophila]
           Length = 401
           
 Score = 86.2 bits (210), Expect = 3e-16
 Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 9/173 (5%)

Query: 3   IIIMGAGRIGTLVARMLESEGH-DVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLEN 60
           ++I+G G +G  +A+++  E + D+ IIE  ++R  E++E + G L++ GD TD  +L+ 
Sbjct: 233 VLIIGCGIVGFYLAKLISKEENVDLKIIEHRKDRCIEVAETLEGVLILNGDGTDLNLLKE 292

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
            NI++ D   A+T  D+ N+L  +LAK L  K   I R        +FE V       D+
Sbjct: 293 ENIEDMDVVIAVTDSDEKNLLCALLAKQLGAK-KVIARADRSDYLPLFEMVG-----IDM 346

Query: 121 VVSPEDIAANYIFRTLVTPGFDRV-LLPREGAEIIQFQVNEDCEVAGKPIKEL 172
            VSP +   N + +  +  G   +  +  E AEII++  +E  ++ G+P+ ++
Sbjct: 347 AVSPREATVNEVLKLTMGRGIQTLTTIEGEKAEIIEYTASESSKIVGRPLSKV 399


 Score = 84.7 bits (206), Expect = 9e-16
 Identities = 61/227 (26%), Positives = 117/227 (50%), Gaps = 12/227 (5%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M  +++GAG +G  +A+ L S  HDV ++E + E AR   E +   V+EG+  +  +L +
Sbjct: 1   MKAVVIGAGEVGYHIAKFL-SLTHDVIVVEKDEEVARRADE-LDVQVLEGNGANADILTS 58

Query: 61  ANIKNADAFAALTGRDDANILACILAKHL---NP---KIMTILRITDPGKKKIFEEVKEL 114
             + +AD   A+TG D+ NI+AC+ AK +   +P   +  TI R+++P    +       
Sbjct: 59  I-LHDADILIAVTGVDEVNIVACMTAKLILRSHPGWKETKTIARVSNPDYIDV-PVTSRA 116

Query: 115 KRYFDIVVSPEDIAANYIFRTLVTP-GFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN 173
           +   DI++ PE   A+ +   L +P   D  +      ++ +F ++ + ++ GK +++L 
Sbjct: 117 QVGVDIMICPELALASEVAEVLSSPSAIDAQVFAEGKVQMTEFAISPESKLVGKQMQDLK 176

Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
           L    ++ AV+ +   + IP G  VI     V++  K  A++ +  I
Sbjct: 177 LADCCIVSAVFRDH-RIFIPHGSDVIKANDHVVVVGKPEAMESLSSI 222


>pir||F82372 potassium uptake protein TrkA VC0043 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9654436|gb|AAF93221.1|
           (AE004095) potassium uptake protein TrkA [Vibrio
           cholerae]
           Length = 458
           
 Score = 86.2 bits (210), Expect = 3e-16
 Identities = 59/230 (25%), Positives = 111/230 (47%), Gaps = 10/230 (4%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++G  +A  L  E +D+ +++ N +R R++ +     V+ G A+   VL  
Sbjct: 1   MKIIILGAGQVGGTLAENLVGENNDITVVDKNADRLRDLQDKYDLRVVNGHASHPDVLRE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDP----GKKKIFEEVKELKR 116
           A  ++AD   A+T  D+ N+ AC +A  L      I RI  P     K+ +F+       
Sbjct: 61  AGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAEKEALFQSGAV--- 117

Query: 117 YFDIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL--N 173
             D +++PE++  +YI R +  PG  +V+    E   ++  +      + G  +  L  +
Sbjct: 118 PVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKAYYGGPLVGNALSALRDH 177

Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
           +P     +A    +G  + P G T+I    +V   A ++ ++ V   +++
Sbjct: 178 MPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHIRSVMSELQR 227


 Score = 81.5 bits (198), Expect = 8e-15
 Identities = 63/212 (29%), Positives = 105/212 (48%), Gaps = 15/212 (7%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIE-GDATDQKVLENA 61
           I+I+G G IG  +A+ LE + + V +IE N +RA ++SE +   ++  GDA DQ++L   
Sbjct: 235 IMIVGGGNIGASLAKRLE-QTYSVKLIEHNYQRAEQLSEQLENTIVFCGDAADQELLSEE 293

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
           NI   D F ALT  D+ NI++ +LAK +  K   +L I   G   + +         D+ 
Sbjct: 294 NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKAMVL-IQRSGYVDLVQ-----GGVIDVA 347

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGA----EIIQFQVNEDCEVAGKPIKELNLPKD 177
           +SP+    + +   +       V   R GA    E I        +V G+ + ++ LP  
Sbjct: 348 ISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAIAHGDESTSKVVGRAVGDIKLPPG 407

Query: 178 SLIIAVYDEKGNLVIPSGD-TVIPKKGQVIIF 208
           + I A+   +G  V+ + D TVI +   V++F
Sbjct: 408 TTIGAIV--RGEEVLIAHDRTVIEQDDHVVMF 437


>sp|P23868|TRKA_ECOLI TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|486860|pir||S36252
           potassium transport system trkG/trkH protein trkA
           [validated] - Escherichia coli >gi|43137|emb|CAA36359.1|
           (X52114) TrkA protein of the  constitutive K+ -transport
           system Trk [Escherichia coli] >gi|443993|emb|CAA54371.1|
           (X77091) trkA [Escherichia coli]
           >gi|606224|gb|AAA58087.1| (U18997) TrkA protein of the
           constitutive K+ transport system Trk [Escherichia coli]
           >gi|1789685|gb|AAC76315.1| (AE000407) transport of
           potassium [Escherichia coli K12]
           Length = 458
           
 Score = 85.4 bits (208), Expect = 5e-16
 Identities = 68/227 (29%), Positives = 124/227 (53%), Gaps = 16/227 (7%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
           I+++G G IG  +AR LE + + V +IE N++RA E++E +   +V  GDA+DQ++L   
Sbjct: 235 IMLVGGGNIGAGLARRLEKD-YSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEE 293

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
           +I   D F A+T  D+ANI++ +LAK +  K + +L      +++ + ++ +     DI 
Sbjct: 294 HIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLI-----QRRAYVDLVQ-GSVIDIA 347

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
           +SP+    + +   +       V   R G AE I+   + D     V G+ I E+ LP  
Sbjct: 348 ISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPG 407

Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKG-QVIIFAKNSA-LQDVKKIME 222
           ++I AV   +GN V+ + D +  ++G  VI+F  +   + DV+++ +
Sbjct: 408 TIIGAVV--RGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQ 452


 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 58/233 (24%), Positives = 108/233 (45%), Gaps = 19/233 (8%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++G  +A  L  E +D+ +++ N ER R + +     V++G  +  +VL  
Sbjct: 1   MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLRE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
           A   +AD   A+T  D+ N++AC +A  L      I RI  P      + V++  + F  
Sbjct: 61  AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP------DYVRDADKLFHS 114

Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL 172
                D +++PE +  + I+R +  PG  +V+   EG   +   +      + G  +  +
Sbjct: 115 DAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTM 174

Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
             ++P     +A        + P G T++    +V   A   A Q ++ +M +
Sbjct: 175 REHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIA---ASQHIRAVMSE 224


>sp|O07194|TRKA_MYCTU TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|7450650|pir||G70529
           probable trkB protein - Mycobacterium tuberculosis
           (strain H37RV) >gi|2181983|emb|CAB09482.1| (Z96072) trkB
           [Mycobacterium tuberculosis]
           Length = 220
           
 Score = 85.0 bits (207), Expect = 7e-16
 Identities = 56/224 (25%), Positives = 110/224 (49%), Gaps = 11/224 (4%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRER--AREISEYVSGLVIEGDATDQKVL 58
           M + + GAG +G  V R L   GHD+ +IE N +   A  I E    L   GDA +  +L
Sbjct: 1   MKVAVAGAGAVGRSVTRELVENGHDITLIERNPDHLDAAAIPEAHWRL---GDACELSLL 57

Query: 59  ENANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF 118
           E+ +++  D   A TG D  N++  +LAK        + R+ DP  + +F +   +    
Sbjct: 58  ESIHLEEFDVVVAATGDDKVNVVLSLLAKTEFAVPRVVARVNDPRNEWLFNDAWGV---- 113

Query: 119 DIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKELNLPKD 177
           D+ VS   + A+ I   +      R++  R G A +++  + ++    GKP+++L LP+D
Sbjct: 114 DVAVSTPRMLASLIEEAVTIGDLVRLMEFRTGQANLVEITLPDNTPWGGKPVRKLQLPRD 173

Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
           + ++ +      +++P  D  +    +++  A   A +++ +++
Sbjct: 174 AALVTIL-RGPRVIVPEADEPLEGGDELLFVAVTEAEEELSRLL 216


>sp|Q53949|TRKA_STRCO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
           >gi|7480330|pir||T34828 potassium uptake protein -
           Streptomyces coelicolor >gi|2815362|emb|CAA16485.1|
           (AL021530) potassium uptake protein [Streptomyces
           coelicolor A3(2)]
           Length = 223
           
 Score = 84.7 bits (206), Expect = 9e-16
 Identities = 61/228 (26%), Positives = 108/228 (46%), Gaps = 10/228 (4%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M+I+IMG GR+G+ +A+ LE +GH VA+I+ +    R +     G  + G   DQ  L  
Sbjct: 1   MHIVIMGCGRVGSALAQALEQQGHTVAVIDRDPTSFRRLGSSFGGRRVTGIGFDQDTLRE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
           A I+ A AFAA++  D++NI+A  +A+ +        RI DP + ++++      R    
Sbjct: 61  AGIEEAGAFAAVSSGDNSNIIAARVAREMFGVENVAARIYDPRRAEVYQ------RLGIP 114

Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLL-PREGAEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
            V+     A+ + R L+  G + +   P  G ++   +V+      G  I  L   +  +
Sbjct: 115 TVATVRWTADQMLRRLLPSGAEPLWRDPTGGVQLA--EVHTSSSWVGHKISRLQ-EETGV 171

Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
            +A     G  ++PS  TV+ +   V +  +   +  V+    K  EE
Sbjct: 172 RVAFVTRLGEAILPSSQTVLQEGDLVHVMMRTDEVHKVEAAFAKGPEE 219


>sp|P39445|TRKA_SALTY TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1084128|pir||S48001
           potassium uptake protein sapG [similarity] - Salmonella
           typhimurium >gi|565631|emb|CAA56663.1| (X80501) sapG
           [Salmonella typhimurium]
           Length = 458
           
 Score = 83.5 bits (203), Expect = 2e-15
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 16/227 (7%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
           I+++G G IG  +AR LE + + V +IE +++RA E++E +   +V  GDA+DQ++L   
Sbjct: 235 IMLVGGGNIGAGLARRLEKD-YSVKLIERDQQRAAELAEKLQNTIVFFGDASDQELLAEE 293

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
           +I   D F A+T  D+ANI++ +LAK +  K + +L      +++ + ++ +     DI 
Sbjct: 294 HIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLI-----QRRAYVDLVQ-GSVIDIA 347

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
           +SP+    + +   +       V   R G AE I+   + D     V G+ I E+ LP  
Sbjct: 348 ISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPG 407

Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKG-QVIIFAKNSA-LQDVKKIME 222
           ++I AV   +GN V+ + D +  ++G  VI+F  +   + DV+++ +
Sbjct: 408 TIIGAVV--RGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQ 452


 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 56/227 (24%), Positives = 107/227 (46%), Gaps = 7/227 (3%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++G  +A  L  E +D+ +++ N ER R + +     V++G  +  +VL  
Sbjct: 1   MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFDLRVVQGHGSHPRVLRE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRY-FD 119
           A   +AD   A+T  D+ N++AC +A  L      I RI  P   +  +++   +    D
Sbjct: 61  AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSEAVPID 120

Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL--NLPK 176
            +++PE +  + I+R +  PG  +V+   EG   +   +      + G  +  +  ++P 
Sbjct: 121 HLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPH 180

Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
               +A        + P G T++    +V   A   A Q ++ +M +
Sbjct: 181 IDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIA---ASQHIRAVMSE 224


>pir||D81063 Trk system potassium uptake protein TrkA NMB1614 [imported] -
           Neisseria meningitidis (group B strain MD58, group A
           strain Z2491) >gi|7226864|gb|AAF41966.1| (AE002511) Trk
           system potassium uptake protein TrkA [Neisseria
           meningitidis MC58] >gi|7380452|emb|CAB85038.1|
           (AL162757) potassium uptake protein [Neisseria
           meningitidis Z2491]
           Length = 470
           
 Score = 77.6 bits (188), Expect = 1e-13
 Identities = 70/230 (30%), Positives = 113/230 (48%), Gaps = 15/230 (6%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
           I+I G G IG  +A+ LE   ++V IIE    RA  I+E +   LV++G ATD+ +L+N 
Sbjct: 243 IMIAGGGNIGYRLAKQLE-HAYNVKIIECRPRRAEWIAENLDNTLVLQGSATDETLLDNE 301

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
            I   D F ALT  D++NI++ +LAK+L  K     R+     +  + ++ E  +  DIV
Sbjct: 302 YIDEIDVFCALTNDDESNIMSALLAKNLGAK-----RVIGIVNRSSYVDLLEGNK-IDIV 355

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
           VSP  I    I   +       V   R G AE I+   + D     + G+ I  +  P+ 
Sbjct: 356 VSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVVAHGDKKTSAIIGRRISGIKWPEG 415

Query: 178 SLIIAVYDE-KGNLVIPSGDTVIPKKGQVIIF--AKNSALQDVKKIMEKK 224
             I AV     G  ++      + + G  IIF  ++   L +++K+++ K
Sbjct: 416 CHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVSRRRILNELEKLIQVK 465


>gb|AAA88557.1| (M29790) unknown protein [Streptomyces coelicolor A3(2)]
           Length = 183
           
 Score = 76.9 bits (186), Expect = 2e-13
 Identities = 38/111 (34%), Positives = 65/111 (58%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M+I+IMG GR+G+ +A+ LE +GH VA+I+ +    R +     G  + G   DQ  L  
Sbjct: 1   MHIVIMGCGRVGSALAQALEQQGHTVAVIDRDPTSFRRLGSSFGGRRVTGIGFDQDTLRE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEV 111
           A I+ A AFAA++  D++NI+A  +A+ +        RI DP + ++++ +
Sbjct: 61  AGIEEAGAFAAVSSGDNSNIIAARVAREMFGVENVAARIYDPRRAEVYQRL 111


>sp|P71354|TRKA_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1573621|gb|AAC22285.1|
           (U32745) TRK system potassium uptake protein (trkA)
           [Haemophilus influenzae Rd]
           Length = 458
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 24/231 (10%)

Query: 3   IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLENA 61
           ++I+G G +   VA+ LE+    V +IE +  RA+ ++E +   LV  GDA+DQ +L   
Sbjct: 235 VMIVGGGNVAFGVAKRLENSC-TVKLIERDSNRAQALAEKLPKTLVFNGDASDQNLLFEE 293

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRY---- 117
           +I++ D F +L+  D+ANI++ +LAK L  K   +L           + +  +       
Sbjct: 294 HIESVDVFLSLSSDDEANIMSALLAKRLGAKKAMVL----------IQRIAYINLIQGGT 343

Query: 118 FDIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVN---EDCEVAGKPIKELN 173
            DI VSP+ +  + +   +       V   R G AE I+   +       + G+ I EL 
Sbjct: 344 IDIAVSPQQVTISALLGHVRKGDVKNVATLRHGIAEAIEIVAHGNVNTSNIVGRKIGELR 403

Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQ--VIIFAKNSALQDVKKIME 222
           LP   +I A+   +GN VI +   VI ++G   VI  +    + +++K+ +
Sbjct: 404 LPMGIIIGALL--RGNDVIIARRQVIIEEGDHIVIYLSDKKNVPEIEKLFQ 452


 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 60/231 (25%), Positives = 105/231 (44%), Gaps = 19/231 (8%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M III+GAG++GT +A  L SE +D+ +++    + + + E     V++G  +  KVL +
Sbjct: 1   MKIIILGAGQVGTTLAENLVSEDNDITLVDNESPQLQTLQEKHDLRVVQGSPSSPKVLRD 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
           A   +AD   A+T  D+ N++AC +   L      I RI +       E ++E  + F  
Sbjct: 61  AGAADADLMVAVTASDEINMVACQMGYTLFNTPTRIARIRNS------EYLREKDKLFNN 114

Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL 172
                D ++SPE++  + I R +  PG  +V         I+  +      + G  +   
Sbjct: 115 ENIPIDHLISPENLVTDEITRLIAYPGALQVAHFANNRISIVVVKAYYGGALVGYALSAF 174

Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
             ++P     I      G  + P G T++ + G  I F    A + +K IM
Sbjct: 175 REHMPHIDCRIMSILRNGKPIRPQGSTIV-EAGDEITFI--CATEHIKAIM 222


>pir||G70430 conserved hypothetical protein aq_1503 - Aquifex aeolicus
           >gi|2983887|gb|AAC07439.1| (AE000743) hypothetical
           protein [Aquifex aeolicus]
           Length = 218
           
 Score = 72.6 bits (175), Expect = 4e-12
 Identities = 58/214 (27%), Positives = 105/214 (48%), Gaps = 13/214 (6%)

Query: 5   IMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENANIK 64
           ++G GR G  VA+ L   G +V  ++++  + ++ISE V+   +  DA D+K LE A + 
Sbjct: 7   VIGLGRFGFYVAKTLAELGAEVIAVDVDENKVKQISEIVTHAYV-ADALDEKALEEAGVF 65

Query: 65  NADAFAALTGRD-DANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVVS 123
           NAD      G++ +A+I   ++ K    K + + +  +    K+ E +   +     VV 
Sbjct: 66  NADTAIVSIGQNVEASIFVVVILKEKGVKEI-VAKAINQLHGKVLERLGVAR-----VVY 119

Query: 124 PEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPK--DSLII 181
           PE   A  +  +L+  G    +    G  I + +  E+    GK +KEL+L K  D  ++
Sbjct: 120 PEMETAIKLAHSLLLKGLIEEIPFAPGYSIFEIKTPENFH--GKSLKELDLRKRYDITVL 177

Query: 182 AVYDEKGNLVI-PSGDTVIPKKGQVIIFAKNSAL 214
           AV    G +V+ PSGD V+ K+  +++      +
Sbjct: 178 AVKKPDGKIVVNPSGDYVLDKEDTLLVLGNKEKM 211


>pir||G75284 probable potassium channel - Deinococcus radiodurans (strain R1)
           >gi|6460150|gb|AAF11884.1|AE002065_1 (AE002065)
           potassium channel, putative [Deinococcus radiodurans]
           Length = 320
           
 Score = 71.8 bits (173), Expect = 6e-12
 Identities = 59/207 (28%), Positives = 96/207 (45%), Gaps = 17/207 (8%)

Query: 2   YIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENA 61
           + I+ G G++G  VA  L   G  V +I+  R    E +E      + GDATD+ VL  A
Sbjct: 107 HTIVCGYGQVGEAVATALRGAGRTVVVIDQ-RPAHLEWAEAHGLYTLVGDATDEDVLRRA 165

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
            I++A A  ++   D AN+   + AK LNP +  I R +D    +     K  +   D  
Sbjct: 166 GIEHAAALVSVLSSDPANLYVVLSAKGLNPGLRVIARASDESAAR-----KMRRAGADEG 220

Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNE---DCEVAGKPIKELNLPKDS 178
           V+P  ++ N I   ++ P   R+L     +E   F V E      + G+ ++ L     +
Sbjct: 221 VNPYQLSGNRIAGMMLAPHLARLLSGDVSSE--HFTVRELDVPAALVGQTVEHLGRSTGA 278

Query: 179 LIIAVYDEKGNL------VIPSGDTVI 199
           L++AV+     L      V+ +GDTV+
Sbjct: 279 LVVAVWRGGQALRGRPQEVLQAGDTVL 305


>pir||F70529 probable trkA protein - Mycobacterium tuberculosis (strain H37RV)
           >gi|2181982|emb|CAB09481.1| (Z96072) trkA [Mycobacterium
           tuberculosis] >gi|2582554|gb|AAC69359.1| (AF026541) CeoB
           [Mycobacterium tuberculosis]
           Length = 227
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 38/111 (34%), Positives = 63/111 (56%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           M +++MG GR+G  VA  L   GH+VAII+ +      +S   +G  + G   D+ VL  
Sbjct: 1   MRVVVMGCGRVGASVADGLSRIGHEVAIIDRDSAAFNRLSPQFAGERVLGQGFDRDVLLR 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEV 111
           A I+ ADAFAA++  D++NI++  LA+        + RI D  + +++E +
Sbjct: 61  AGIQGADAFAAVSSGDNSNIISARLARETFGVPRVVARIYDAKRAEVYERL 111


>pir||S76263 hypothetical protein - Synechocystis sp. (strain PCC 6803)
           >gi|1001490|dbj|BAA10115.1| (D64000) hypothetical
           protein [Synechocystis sp.]
           Length = 226
           
 Score = 69.9 bits (168), Expect = 2e-11
 Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 14/228 (6%)

Query: 1   MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
           MYI+I G G +G+ +A+ L   GH VA ++ +    +   E +  +  EG A +  VL  
Sbjct: 1   MYILIGGMGSMGSNLAKNLLKMGHTVAAVDTDPLACQYAREKIGVMAFEGSAVNTSVLLE 60

Query: 61  ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
           A ++ A A  A    D  N+    L+KH   P+I  ++R++D      F E   L     
Sbjct: 61  AGVRKAGAVIAALQEDALNLALVTLSKHYGVPQI--VVRMSDGD----FAEPYRLAGATH 114

Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPI----KELNL 174
           I +S  ++A N +   +  P  D ++   +G  E+++  +  +C + G+ +    ++   
Sbjct: 115 I-ISTTELALNRVINAIEYPQVDAMMHFEQGQIEVLKLSIPPNCTIVGRSVAAIAQDPRF 173

Query: 175 PKDSLIIAVY-DEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
           P  +LII    +   +L IP+G+T++     ++   K   ++ +   M
Sbjct: 174 PSGTLIIGYQANAHEDLKIPNGNTLLEDGSTILAVTKPELVRQLIDFM 221


>pir||F70327 conserved hypothetical protein aq_303 - Aquifex aeolicus
           >gi|2983007|gb|AAC06619.1| (AE000683) hypothetical
           protein [Aquifex aeolicus]
           Length = 368
           
 Score = 69.5 bits (167), Expect = 3e-11
 Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 11/235 (4%)

Query: 2   YIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENA 61
           + II+G  +    + R+L     ++ +++  RE  R+I E      I  +   + VLE A
Sbjct: 132 HFIIVGFNKTSQELIRLLRKRKIEIVVVDSRREVERQIKESKVKYYIIEEPYKRVVLEAA 191

Query: 62  NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
            I  A       G D  NI   + A+ + PK       +    +   ++++EL     +V
Sbjct: 192 GIYKAMGMVVNLGDDAKNIAVIVTARLMRPKKEDFFIYSFASSEDTAQKLEELGANRAVV 251

Query: 122 ---VSPEDIAANYIFR---TLVTPGFDRVLLPRE-GAEIIQFQVNEDCEVAGKPIKELNL 174
              +    +AA Y+F      ++  FDR+    E   +I++  V ED E+ GK +KEL+L
Sbjct: 252 PYRLLATRVAA-YVFHAGSAFISDLFDRIAFGEETEIDILEVTVPEDSELVGKQLKELDL 310

Query: 175 PKD--SLIIAVYDEKGNLVIP-SGDTVIPKKGQVIIFAKNSALQDVKKIMEKKRE 226
            K+    +IAV    G L++  SG+T I     +I+F     L+  ++I+ +K E
Sbjct: 311 RKNLGVTVIAVRKPDGKLIVTVSGETKIEPGDTLILFGHPKNLRKAQRILLRKVE 365


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79733441
Number of Sequences: 2977
Number of extensions: 3355662
Number of successful extensions: 11196
Number of sequences better than 1.0e-10: 30
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11126
Number of HSP's gapped (non-prelim): 40
length of query: 227
length of database: 189,106,746
effective HSP length: 57
effective length of query: 170
effective length of database: 154,992,987
effective search space: 26348807790
effective search space used: 26348807790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)