BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1178 (trkA) DE:TRK potassium uptake system protein (trkA)
(227 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75029 trk potassium uptake system protein (trka) PAB1178 -... 446 e-124
sp|O57719|TRKA_PYRHO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO... 425 e-118
sp|Q58505|TRKA_METJA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO... 159 3e-38
pir||B69036 TRK system potassium uptake protein TrkA - Methanoba... 139 3e-32
sp|O27333|TRKA_METTH TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO... 139 3e-32
gb|AAG20882.1| (AE005156) Vng6223c [Halobacterium sp. NRC-1] 112 3e-24
gi|11498444 TRK potassium uptake system protein (trkA-2) [Archae... 108 8e-23
gb|AAG18790.1| (AE004983) TRK potassium uptake system protein; T... 101 6e-21
gb|AAG20878.1| (AE005155) TRK potassium uptake system protein; T... 100 2e-20
pir||E83643 potassium uptake protein TrkA PA0016 [imported] - Ps... 99 4e-20
gb|AAG20112.1| (AE005090) TRK potassium uptake system protein; T... 98 7e-20
gb|AAG20842.1| (AE005152) TRK potassium uptake system protein; T... 97 2e-19
gb|AAG20899.1| (AE005157) TRK potassium uptake system protein; T... 96 3e-19
gb|AAG19633.1| (AE005052) TRK potassium uptake system protein; T... 93 2e-18
sp|P39449|TRKA_METMA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO... 90 2e-17
sp|P39448|TRKA_VIBAL TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g... 87 2e-16
pir||T45222 heat shock protein trkA [imported] - Methanosarcina ... 86 3e-16
pir||F82372 potassium uptake protein TrkA VC0043 [imported] - Vi... 86 3e-16
sp|P23868|TRKA_ECOLI TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g... 85 5e-16
sp|O07194|TRKA_MYCTU TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g... 85 7e-16
sp|Q53949|TRKA_STRCO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HO... 85 9e-16
sp|P39445|TRKA_SALTY TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g... 83 2e-15
pir||D81063 Trk system potassium uptake protein TrkA NMB1614 [im... 78 1e-13
gb|AAA88557.1| (M29790) unknown protein [Streptomyces coelicolor... 77 2e-13
sp|P71354|TRKA_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >g... 73 4e-12
pir||G70430 conserved hypothetical protein aq_1503 - Aquifex aeo... 73 4e-12
pir||G75284 probable potassium channel - Deinococcus radiodurans... 72 6e-12
pir||F70529 probable trkA protein - Mycobacterium tuberculosis (... 71 1e-11
pir||S76263 hypothetical protein - Synechocystis sp. (strain PCC... 70 2e-11
pir||F70327 conserved hypothetical protein aq_303 - Aquifex aeol... 69 3e-11
>pir||C75029 trk potassium uptake system protein (trka) PAB1178 - Pyrococcus
abyssi (strain Orsay) >gi|5459187|emb|CAB50673.1|
(AJ248288) TRK potassium uptake system protein (trkA)
[Pyrococcus abyssi]
Length = 227
Score = 446 bits (1134), Expect = e-124
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN
Sbjct: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI
Sbjct: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI
Sbjct: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE
Sbjct: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
>sp|O57719|TRKA_PYRHO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
>gi|7450646|pir||H71214 hypothetical protein PH1984 -
Pyrococcus horikoshii >gi|3258428|dbj|BAA31111.1|
(AP000007) 228aa long hypothetical protein [Pyrococcus
horikoshii]
Length = 228
Score = 425 bits (1082), Expect = e-118
Identities = 211/227 (92%), Positives = 224/227 (97%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MYI+IMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEY+SGLVIEGDATDQKVLEN
Sbjct: 1 MYIVIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYISGLVIEGDATDQKVLEN 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
ANIKNA+AFAALTG+DDANILACILAKHLNP IMTILRITDPGKKKIFE+VKELK YFDI
Sbjct: 61 ANIKNANAFAALTGKDDANILACILAKHLNPNIMTILRITDPGKKKIFEDVKELKTYFDI 120
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
VVSPEDIAANYIFRTLVTPGF+RVLLPREGAEIIQFQ++EDCEVAGKP+KELNLPKDSLI
Sbjct: 121 VVSPEDIAANYIFRTLVTPGFNRVLLPREGAEIIQFQIDEDCEVAGKPVKELNLPKDSLI 180
Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
IAVYDEKGNL IPSGDT+IPKKGQVIIFAKNSALQ+VKKIMEKK++E
Sbjct: 181 IAVYDEKGNLTIPSGDTIIPKKGQVIIFAKNSALQEVKKIMEKKKKE 227
>sp|Q58505|TRKA_METJA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
>gi|2129328|pir||H64437 TRK system potassium uptake
protein A - Methanococcus jannaschii
>gi|1591749|gb|AAB99108.1| (U67553) TRK system potassium
uptake protein (trkA) [Methanococcus jannaschii]
Length = 218
Score = 159 bits (397), Expect = 3e-38
Identities = 89/221 (40%), Positives = 137/221 (61%), Gaps = 8/221 (3%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MYIII G GR+G +A+ L +GHD+ +I+++++ ++ S + LVI GD T K LE+
Sbjct: 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLED 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A I++AD + A+TG+++ N+++ +LAK TI RI++ K +FE + D+
Sbjct: 61 AGIEDADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLG-----VDV 114
Query: 121 VVSPEDIAANYIFRTLVTPG-FDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
VVSPE IAANYI + + PG D ++ R AEI++F + E +V K IKEL P+D L
Sbjct: 115 VVSPELIAANYIEKLIERPGILDLAIVGRGEAEILEFIIPEKAKVVNKKIKELGRPQDYL 174
Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
IIA+YD L IPSGDT + +V++ K A ++K+
Sbjct: 175 IIAIYD-GDELKIPSGDTELKSGDRVLVLVKKDAADAIRKM 214
>pir||B69036 TRK system potassium uptake protein TrkA - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622379|gb|AAB85754.1| (AE000893) TRK system
potassium uptake protein TrkA [Methanobacterium
thermoautotrophicum]
Length = 218
Score = 139 bits (346), Expect = 3e-32
Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 11/221 (4%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MY++IMG GR+G +A +L S+GHDV +IE + + LVI G+ TD K LE
Sbjct: 3 MYVVIMGGGRVGLTLANLLISDGHDVTLIENEETLCANAAVELDALVICGNGTDIKTLEE 62
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
ANI NAD F A TG D+AN+L+CIL + + PKI I R+++P ++ F++V D
Sbjct: 63 ANISNADVFVAATGNDEANLLSCILVREYSIPKI--IARVSNPDHEEAFKKVG-----ID 115
Query: 120 IVVSPEDIAANYIFRTLVTPGF-DRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDS 178
V+SPE AA Y+ + + P D ++L AEI+ ++ +V GK + +++
Sbjct: 116 HVISPERTAAGYLEKLITRPKVADLIVLGHGDAEILDMEIRSS-KVVGKRVGDVSPTDKY 174
Query: 179 LIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKK 219
+I+A+Y+ G+L+IP D V+ + +V + K A+++ +
Sbjct: 175 IIVAIYN-NGDLIIPQPDMVLERGTKVSVLVKTDAVKEATR 214
>sp|O27333|TRKA_METTH TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
Length = 216
Score = 139 bits (346), Expect = 3e-32
Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 11/221 (4%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MY++IMG GR+G +A +L S+GHDV +IE + + LVI G+ TD K LE
Sbjct: 1 MYVVIMGGGRVGLTLANLLISDGHDVTLIENEETLCANAAVELDALVICGNGTDIKTLEE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
ANI NAD F A TG D+AN+L+CIL + + PKI I R+++P ++ F++V D
Sbjct: 61 ANISNADVFVAATGNDEANLLSCILVREYSIPKI--IARVSNPDHEEAFKKVG-----ID 113
Query: 120 IVVSPEDIAANYIFRTLVTPGF-DRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDS 178
V+SPE AA Y+ + + P D ++L AEI+ ++ +V GK + +++
Sbjct: 114 HVISPERTAAGYLEKLITRPKVADLIVLGHGDAEILDMEIRSS-KVVGKRVGDVSPTDKY 172
Query: 179 LIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKK 219
+I+A+Y+ G+L+IP D V+ + +V + K A+++ +
Sbjct: 173 IIVAIYN-NGDLIIPQPDMVLERGTKVSVLVKTDAVKEATR 212
>gb|AAG20882.1| (AE005156) Vng6223c [Halobacterium sp. NRC-1]
Length = 217
Score = 112 bits (278), Expect = 3e-24
Identities = 69/218 (31%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 4 IIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENANI 63
+I G G++G A L S GHDV +IE + +R E+S+ G VI GDAT +L A++
Sbjct: 8 VIAGGGQVGLQAAGNLSSLGHDVVLIEPDEQRVAELSDAYVGPVIHGDATRPSILTQADL 67
Query: 64 KNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVVS 123
+ADA AALT AN+ C+ A+HLNP I T+ R D + +EEV D +
Sbjct: 68 DDADAIAALTDDTSANLAICMEAQHLNPAIQTLAR-ADTQCNEEYEEV------VDATLL 120
Query: 124 PEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLIIAV 183
P+ + +Y L ++ P +II+ V E VAG+ + E+ LP+ SL+I+
Sbjct: 121 PKYLGGDYAADMLTGEDVRTLVYPTSDLDIIEISVAESAPVAGRRLDEIALPEGSLLIST 180
Query: 184 YDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
D + + + V+ + + ++ + +V+ +M
Sbjct: 181 ADREH---LAGPEMVLEPERRYVLAVEADVADEVRDLM 215
>gi|11498444 TRK potassium uptake system protein (trkA-2) [Archaeoglobus
fulgidus] >gi|7388322|sp|O29420|TRKA_ARCFU TRK SYSTEM
POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
>gi|7450649|pir||F69354 TRK potassium uptake system
protein (trkA-2) homolog - Archaeoglobus fulgidus
>gi|2649767|gb|AAB90401.1| (AE001046) TRK potassium
uptake system protein (trkA-2) [Archaeoglobus fulgidus]
Length = 436
Score = 108 bits (266), Expect = 8e-23
Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 6/221 (2%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M I+I GAG +G +A L + HDV IIE + R +SE + + I G+A + KVL +
Sbjct: 1 MRIVIAGAGEVGYHLAMSL-APNHDVIIIEKDVSRFERVSE-LDVVAINGNAANMKVLRD 58
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A ++ AD F A+TG D+ N+L+ + AK + K I+R+ +P + VKE +D+
Sbjct: 59 AGVERADVFLAVTGNDEVNLLSGLAAKKVGAK-NVIVRVENP-EYVDRPIVKEHPLGYDV 116
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
++ P+ A R + PG V+ G E+I+ QV E + GK I +L LP++ +
Sbjct: 117 LICPQLSLAQEAARLIGIPGAIEVVTFSGGKVEMIELQVMEGSKADGKAIADLYLPQNVV 176
Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
I ++Y G++ IP GDTV+ +V I +K ++ +K I
Sbjct: 177 IASIY-RNGHIEIPRGDTVLRAGDRVAIVSKTEDVEMLKGI 216
Score = 99.8 bits (245), Expect = 2e-20
Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 12/220 (5%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGL-VIEGDATDQKVLENA 61
+ I GAG IG+ A++L V +IE + ER +S + G+ ++ GDATD + L
Sbjct: 225 VTIFGAGTIGSYTAKILAKGMTSVKLIESSMERCEALSGELEGVRIVCGDATDIEFLIEE 284
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
I +DA A T D+ N+L +L+K+L +I I ++ K+FE V D+
Sbjct: 285 EIGKSDAVLAATESDEKNLLISLLSKNLGARI-AIAKVEKREYVKLFEAVG-----VDVA 338
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLII 181
++P + N + + L T + L EG +++ V + + GK +K+L LPKD++I
Sbjct: 339 LNPRSVTYNEVSKLLRTMRIE-TLAEIEGTAVVEVVV-RNTRLVGKALKDLPLPKDAIIG 396
Query: 182 AVYDEKGN-LVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
A+ +GN +IP GDT I + ++++FAK ++ +++I
Sbjct: 397 AIV--RGNECLIPRGDTTIEYEDRLLVFAKWDEIEKIEEI 434
>gb|AAG18790.1| (AE004983) TRK potassium uptake system protein; TrkA1
[Halobacterium sp. NRC-1]
Length = 228
Score = 101 bits (250), Expect = 6e-21
Identities = 64/205 (31%), Positives = 108/205 (52%), Gaps = 13/205 (6%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MY+II+GAG IGT + + G++VA+IE + RA ++ LV+ DAT + L +
Sbjct: 1 MYLIIVGAGDIGTPLIDVATRSGNEVAVIERDDSRAARAADDYDCLVLHDDATIKDTLAD 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
A ADA + T +D NI+ C+LA + P I+++ + +P +FE +
Sbjct: 61 AGAGRADAIISTTDQDATNIMVCLLAAEFDIPAILSV--VHNPEHMGVFERIG-----VS 113
Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKEL----NLP 175
+ +P+ + A Y++R + P + + AE+ + V + VAG ++E LP
Sbjct: 114 TMENPQQLIAEYLYRAVTRPAIVDYMRIGDHAEVFEISVTDSAPVAGTTLQEAANTGALP 173
Query: 176 KDSLIIAV-YDEKGNLVIPSGDTVI 199
D L++A+ D G+ + P GDTVI
Sbjct: 174 DDVLVVAIERDGDGDPITPRGDTVI 198
>gb|AAG20878.1| (AE005155) TRK potassium uptake system protein; TrkA3
[Halobacterium sp. NRC-1]
Length = 217
Score = 99.8 bits (245), Expect = 2e-20
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 9/204 (4%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENAN 62
+II G GR+G A +L GHDV IIE + +I++ VIEGDAT+ ++E A
Sbjct: 7 LIIAGGGRVGFQTAELLADRGHDVTIIERDTRVVDDIADQWMATVIEGDATNPAIIEQAG 66
Query: 63 IKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVV 122
+ AD AALTG N+ C+ A L P I TI RI D G + + R+ D VV
Sbjct: 67 VDRADGIAALTGETGLNLAVCLAAAELTPSIRTIARI-DHGVRDSY------TRFVDAVV 119
Query: 123 SPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLIIA 182
PE A ++ + E++ +V + AGK ++++ P ++II+
Sbjct: 120 FPERAGARVAANEIIGDDVQTLADITGDLELMLVRVADGAPAAGKQLRDVRFPAGTVIIS 179
Query: 183 VYDEKGNLVIPSGDTVIPKKGQVI 206
D G + T+ P +I
Sbjct: 180 GAD--GQRIARPDTTLTPGSRYII 201
>pir||E83643 potassium uptake protein TrkA PA0016 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945835|gb|AAG03406.1|AE004441_7 (AE004441)
potassium uptake protein TrkA [Pseudomonas aeruginosa]
Length = 457
Score = 99.1 bits (243), Expect = 4e-20
Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 5/227 (2%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++G +A L SE +D+ +++ + +R R++ + + ++G A+ VL
Sbjct: 1 MKIIILGAGQVGGTLAEHLASEANDITVVDTDGDRLRDLGDRLDIRTVQGKASFPTVLRQ 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A +AD A+T D+ N++AC +A L I R+ +P D+
Sbjct: 61 AGADDADMLVAVTNSDETNMVACQVAYTLFNTPTKIARVREPAYLTRTGLFDNEAIPVDV 120
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL--NLPK- 176
++SPE + NYI R + PG +V+ EG A+++ + + G+ +++L ++P
Sbjct: 121 LISPEQVVTNYIKRLIEHPGALQVIDFAEGKAQLVGIKAYYGGPLVGQELRQLREHMPNV 180
Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
D+ + A+Y + +IP GDTVI +V A + ++ V M +
Sbjct: 181 DTRVAAIY-RRNRPIIPQGDTVIEADDEVFFIAAKAHIRAVMGEMRR 226
Score = 84.7 bits (206), Expect = 9e-16
Identities = 68/227 (29%), Positives = 116/227 (50%), Gaps = 16/227 (7%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLENA 61
III G G +G +A +ES + V IIE + R R +S+ + S +V+ G A+D+ +L
Sbjct: 234 IIIAGGGNVGERLAEAIESR-YQVKIIERSPLRCRHLSDTLDSTIVLNGSASDRDLLLEE 292
Query: 62 NIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFDI 120
NI D F ALT D+ANI++ +LAK L K+MT+ I +P + + + DI
Sbjct: 293 NIGETDVFLALTNDDEANIMSSLLAKRLGASKVMTL--INNPAYVDLVQGGE-----IDI 345
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGA----EIIQFQVNEDCEVAGKPIKELNLPK 176
+SP+ + + + V R GA E++ + +V G+ I E+ LP
Sbjct: 346 AISPQLATIGTLLAHVRRGDIESVHSLRRGAAEAIEVVAHGDAKSSKVIGRSINEIKLPP 405
Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIF-AKNSALQDVKKIME 222
+ I A+ ++ ++I GDT I V++F ++DV+++ +
Sbjct: 406 GTTIGALVRDE-EVLIAHGDTRIESGDHVLLFLVDKKYIRDVERLFQ 451
>gb|AAG20112.1| (AE005090) TRK potassium uptake system protein; TrkA6
[Halobacterium sp. NRC-1]
Length = 259
Score = 98.3 bits (241), Expect = 7e-20
Identities = 63/221 (28%), Positives = 113/221 (50%), Gaps = 6/221 (2%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M I+I+GAGR+G+ AR++ +E H V +IE + +RA E + V+EGD T + L +
Sbjct: 35 MDIVIVGAGRVGSRTARVVTNEDHAVTVIEQDYDRA-ERARTEGFDVVEGDGTSEDTLLD 93
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A I ADA ALT + N +AC++ H + + T+LRI + ++ I+ + + D
Sbjct: 94 AGIDTADAIGALTSDLNTNFIACMVGNHHDCR--TVLRIDEDYREDIYRKYAD---EVDE 148
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPKDSLI 180
+V PE + A L+ + E +++Q V ++ + G I EL LP + +
Sbjct: 149 IVYPERLGAIGAKNALLGGNVTAIADLAEHLQVVQLTVTDEAPMRGYSISELELPAGARL 208
Query: 181 IAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
+A +L +P + ++ + A+ L V++I+
Sbjct: 209 LAFGKHDASLALPLPSETLETGDRIAVLAEFDTLDSVRQIL 249
>gb|AAG20842.1| (AE005152) TRK potassium uptake system protein; TrkA2
[Halobacterium sp. NRC-1]
Length = 234
Score = 97.1 bits (238), Expect = 2e-19
Identities = 64/225 (28%), Positives = 113/225 (49%), Gaps = 16/225 (7%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M +I+GAGRIG+ V + V +IE ERA E + VI DAT+++ L
Sbjct: 1 MTTVIVGAGRIGSSVIELAADANIGVTVIEQEHERAHEFKADENCHVIHDDATERETLHE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKK-KIFEEVKELKRYFD 119
A + NADA A T +D N++ +LA+ L + T++ + + +F ++
Sbjct: 61 AEVGNADAIIATTDQDTTNLMVLMLARELGCE--TLVSVVHAEENIPLFRQLGA-----T 113
Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPRE---GAEIIQFQVNEDCEVAGKPIKELN--- 173
I+ +P+ + A Y+FR PG + + GAE+ + V + + GK +++ +
Sbjct: 114 IIENPQRLIAEYLFRGTHDPGIQGFMHVGDRDGGAEVFEISVADGAPIIGKTLEQADVAG 173
Query: 174 -LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDV 217
LP +++AV + G ++IP G+T I V +F+K + +V
Sbjct: 174 FLPPSMVVVAV-ERDGEIIIPRGNTQIETDDLVTVFSKEGIINEV 217
>gb|AAG20899.1| (AE005157) TRK potassium uptake system protein; TrkA4
[Halobacterium sp. NRC-1]
Length = 232
Score = 96.0 bits (235), Expect = 3e-19
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 12/225 (5%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M +II+GAG +G + + G++V ++E + RA EI++ V+ DATD+ +++
Sbjct: 1 MQVIIVGAGTVGAPLVDVATGSGNEVVVVEQDGGRANEIADAYDCAVLHADATDESTIQD 60
Query: 61 ANIKNADAFAALTGRDDANILACIL-AKHLNPKIMTILRITDPGKKKIFEEVKELKRYFD 119
A ADA TGRD N+ C+L A+H P ++++L+ P + +F E+
Sbjct: 61 AGADRADALITTTGRDPTNLFVCLLGAEHDIPTVVSLLQ--RPAHRHLFAELGVY----- 113
Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN----LP 175
V D+AA ++R P + A + + V D +A + + LP
Sbjct: 114 TVAGLHDLAAESLYRVARQPAVSESMPVAGDAAVFRITVGADAPIADTMLVDARSTGVLP 173
Query: 176 KDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
D L++AV G I +T I +V +++ DV +
Sbjct: 174 DDVLVVAVRTGDGEAEIARSETTITPGDEVTVYSSRGTTADVTAV 218
>gb|AAG19633.1| (AE005052) TRK potassium uptake system protein; TrkA5
[Halobacterium sp. NRC-1]
Length = 222
Score = 93.2 bits (228), Expect = 2e-18
Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MYII++GAG IG+ V ++L +++ +IE + + A ++S LV+ DAT + L +
Sbjct: 1 MYIIVVGAGDIGSQVIQLLTKSANEIVVIETDPDVADQVSRDYDCLVLNADATAKDTLVD 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A + ADA T RD NI+ +LA L+ + + + DP ++F + ++
Sbjct: 61 AGSEKADAIITTTDRDPTNIMVMLLADELDIE-SKVSVVQDPDNMELFRRIG-----VNV 114
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN----LPK 176
+ +P+ + Y+ R + P + AE+ + V ED +A + +++ + L
Sbjct: 115 LENPQRLIGEYLVRAVQRPSIKDFMTLGGEAEVFEITVTEDAPLAEQTLQDADTNGLLGD 174
Query: 177 DSLIIAVYDEKGNLVI-PSGDTVIPKKGQVIIFAKNSALQDV 217
D L++A+ E+G+ VI P G+T I + F+K+ V
Sbjct: 175 DVLVVAI--ERGDDVITPRGETTIHAGDLITAFSKHGVTSSV 214
>sp|P39449|TRKA_METMA TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
>gi|629381|pir||S39806 trkA protein - Methanosarcina
mazei >gi|414170|emb|CAA52360.1| (X74307) trkA
[Methanosarcina mazei]
Length = 406
Score = 90.5 bits (221), Expect = 2e-17
Identities = 64/232 (27%), Positives = 121/232 (51%), Gaps = 14/232 (6%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M +I+GAG +G +A+ L S +DV II+ + E A+ E + LVIEG+ + ++L
Sbjct: 1 MKAVIIGAGEVGYHIAKAL-SPKNDVVIIDKDEEAAKRADE-LDVLVIEGNGANAEILSR 58
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPK------IMTILRITDPGKKKIFEEVKEL 114
++NAD A+TG D+ NI+AC+ AK + TI R+++P I V
Sbjct: 59 V-LQNADLLVAVTGVDEVNIVACMTAKLIMKNKNGWKDTKTIARVSNP--DYIDSPVTSR 115
Query: 115 KRY-FDIVVSPEDIAANYIFRTLVTP-GFDRVLLPREGAEIIQFQVNEDCEVAGKPIKEL 172
+ D+++ PE A+ + L +P D + + +F ++ + ++ GK +++L
Sbjct: 116 AQVGVDLMICPELALASEVADILSSPSAIDAEMFAEGKVRMTEFAISPESKLVGKHMQDL 175
Query: 173 NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKK 224
L ++ AV+ E ++IP GD +I +++ K +++D++ + K
Sbjct: 176 KLADCCIVSAVFRE-DQIIIPHGDDLIKANDHMVVVGKPESMEDLESVFGSK 226
Score = 90.1 bits (220), Expect = 2e-17
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 9/177 (5%)
Query: 3 IIIMGAGRIGTLVARMLESEGH-DVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLEN 60
I+++G G +G +A++++ E + D+ IIE ++ R E++E + + LV+ GD TD +L
Sbjct: 233 ILLIGCGIVGMYLAKLIDKEENADLRIIEHSKSRCIEVAEILENALVLNGDGTDVSLLRE 292
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
NI++ D A+T D+ N+L +LAK L K I R +FE V D+
Sbjct: 293 ENIEDMDVVVAVTDSDEKNLLCSLLAKQLGAK-KVIARADRSDYLPLFEMVG-----IDM 346
Query: 121 VVSPEDIAANYIFRTLVTPGFDRV-LLPREGAEIIQFQVNEDCEVAGKPIKELNLPK 176
VSP + N + + + G + + E AEII++ +E + GKP+ ++ PK
Sbjct: 347 AVSPREATVNEVLKLTMGRGIQTLTTIEGERAEIIEYTASEKSRIVGKPLNKVKFPK 403
>sp|P39448|TRKA_VIBAL TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1073743|pir||S50220
potassium transport protein trkA [validated] - Vibrio
alginolyticus >gi|541661|dbj|BAA05838.1| (D28477) TrkA
protein [Vibrio alginolyticus]
>gi|3288670|dbj|BAA31228.1| (D86411) TrkA [Vibrio
alginolyticus] >gi|1092506|prf||2024220A K transporter
[Vibrio alginolyticus]
Length = 458
Score = 86.6 bits (211), Expect = 2e-16
Identities = 60/233 (25%), Positives = 111/233 (46%), Gaps = 16/233 (6%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++G +A L E +D+ I++ N +R RE+ + V+ G A+ VL
Sbjct: 1 MKIIILGAGQVGGTLAENLVGENNDITIVDNNADRLRELQDKYDLRVVNGHASHPDVLHE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
A ++AD A+T D+ N+ AC +A L + RI P E + E + F
Sbjct: 61 AGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRVARIRSP------EYLAEKEALFKS 114
Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL 172
D +++PE++ +YI R + PG +V+ + ++ + + G + L
Sbjct: 115 GAIPVDHLIAPEELVTSYIERLIQYPGALQVVSFAEQKVSLVAVKAYYGGPLVGNALSAL 174
Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
++P +A +G + P G T+I +V A ++ ++ V +++
Sbjct: 175 REHMPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHIRSVMSELQR 227
Score = 83.9 bits (204), Expect = 1e-15
Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 16/227 (7%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIE-GDATDQKVLENA 61
I+I+G G IG +A+ LE + + V +IE N +RA ++SE + ++ GDA DQ++L
Sbjct: 235 IMIVGGGNIGASLAKRLE-QNYSVKLIERNYQRAEKLSEELENTIVFCGDAADQELLSEE 293
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
NI D F ALT D+ NI++ +LAK + K + +L ++ + ++ + D+
Sbjct: 294 NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLI-----QRGAYVDLVQ-GGVIDVA 347
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
+SP+ + + + V R G AE I+ + D +V G+ I ++ LP
Sbjct: 348 ISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAVAHGDESTSKVVGRAIGDIKLPPG 407
Query: 178 SLIIAVYDEKGNLVIPSGD-TVIPKKGQVIIFAKNSA-LQDVKKIME 222
+ I A+ +G V+ + D TVI + V++F N + DV+ + +
Sbjct: 408 TTIGAIV--RGEEVLIAHDRTVIEQDDHVVMFLVNKKYVSDVEALFQ 452
>pir||T45222 heat shock protein trkA [imported] - Methanosarcina thermophila
(fragment) >gi|5824108|emb|CAB53764.1| (AJ010400) TrkA
protein [Methanosarcina thermophila]
Length = 401
Score = 86.2 bits (210), Expect = 3e-16
Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 3 IIIMGAGRIGTLVARMLESEGH-DVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLEN 60
++I+G G +G +A+++ E + D+ IIE ++R E++E + G L++ GD TD +L+
Sbjct: 233 VLIIGCGIVGFYLAKLISKEENVDLKIIEHRKDRCIEVAETLEGVLILNGDGTDLNLLKE 292
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
NI++ D A+T D+ N+L +LAK L K I R +FE V D+
Sbjct: 293 ENIEDMDVVIAVTDSDEKNLLCALLAKQLGAK-KVIARADRSDYLPLFEMVG-----IDM 346
Query: 121 VVSPEDIAANYIFRTLVTPGFDRV-LLPREGAEIIQFQVNEDCEVAGKPIKEL 172
VSP + N + + + G + + E AEII++ +E ++ G+P+ ++
Sbjct: 347 AVSPREATVNEVLKLTMGRGIQTLTTIEGEKAEIIEYTASESSKIVGRPLSKV 399
Score = 84.7 bits (206), Expect = 9e-16
Identities = 61/227 (26%), Positives = 117/227 (50%), Gaps = 12/227 (5%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M +++GAG +G +A+ L S HDV ++E + E AR E + V+EG+ + +L +
Sbjct: 1 MKAVVIGAGEVGYHIAKFL-SLTHDVIVVEKDEEVARRADE-LDVQVLEGNGANADILTS 58
Query: 61 ANIKNADAFAALTGRDDANILACILAKHL---NP---KIMTILRITDPGKKKIFEEVKEL 114
+ +AD A+TG D+ NI+AC+ AK + +P + TI R+++P +
Sbjct: 59 I-LHDADILIAVTGVDEVNIVACMTAKLILRSHPGWKETKTIARVSNPDYIDV-PVTSRA 116
Query: 115 KRYFDIVVSPEDIAANYIFRTLVTP-GFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELN 173
+ DI++ PE A+ + L +P D + ++ +F ++ + ++ GK +++L
Sbjct: 117 QVGVDIMICPELALASEVAEVLSSPSAIDAQVFAEGKVQMTEFAISPESKLVGKQMQDLK 176
Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKI 220
L ++ AV+ + + IP G VI V++ K A++ + I
Sbjct: 177 LADCCIVSAVFRDH-RIFIPHGSDVIKANDHVVVVGKPEAMESLSSI 222
>pir||F82372 potassium uptake protein TrkA VC0043 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654436|gb|AAF93221.1|
(AE004095) potassium uptake protein TrkA [Vibrio
cholerae]
Length = 458
Score = 86.2 bits (210), Expect = 3e-16
Identities = 59/230 (25%), Positives = 111/230 (47%), Gaps = 10/230 (4%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++G +A L E +D+ +++ N +R R++ + V+ G A+ VL
Sbjct: 1 MKIIILGAGQVGGTLAENLVGENNDITVVDKNADRLRDLQDKYDLRVVNGHASHPDVLRE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDP----GKKKIFEEVKELKR 116
A ++AD A+T D+ N+ AC +A L I RI P K+ +F+
Sbjct: 61 AGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSPQYLAEKEALFQSGAV--- 117
Query: 117 YFDIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL--N 173
D +++PE++ +YI R + PG +V+ E ++ + + G + L +
Sbjct: 118 PVDHLIAPEELVTSYIERLIQYPGALQVVSFAEEKVSLVAVKAYYGGPLVGNALSALRDH 177
Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
+P +A +G + P G T+I +V A ++ ++ V +++
Sbjct: 178 MPHIDTRVAAIFRQGRPIRPQGTTIIEADDEVFFVAASNHIRSVMSELQR 227
Score = 81.5 bits (198), Expect = 8e-15
Identities = 63/212 (29%), Positives = 105/212 (48%), Gaps = 15/212 (7%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIE-GDATDQKVLENA 61
I+I+G G IG +A+ LE + + V +IE N +RA ++SE + ++ GDA DQ++L
Sbjct: 235 IMIVGGGNIGASLAKRLE-QTYSVKLIEHNYQRAEQLSEQLENTIVFCGDAADQELLSEE 293
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
NI D F ALT D+ NI++ +LAK + K +L I G + + D+
Sbjct: 294 NIDQVDVFIALTNEDETNIMSAMLAKRMGAKKAMVL-IQRSGYVDLVQ-----GGVIDVA 347
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGA----EIIQFQVNEDCEVAGKPIKELNLPKD 177
+SP+ + + + V R GA E I +V G+ + ++ LP
Sbjct: 348 ISPQQATISALLTHVRRADIVNVSSLRRGAAEAIEAIAHGDESTSKVVGRAVGDIKLPPG 407
Query: 178 SLIIAVYDEKGNLVIPSGD-TVIPKKGQVIIF 208
+ I A+ +G V+ + D TVI + V++F
Sbjct: 408 TTIGAIV--RGEEVLIAHDRTVIEQDDHVVMF 437
>sp|P23868|TRKA_ECOLI TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|486860|pir||S36252
potassium transport system trkG/trkH protein trkA
[validated] - Escherichia coli >gi|43137|emb|CAA36359.1|
(X52114) TrkA protein of the constitutive K+ -transport
system Trk [Escherichia coli] >gi|443993|emb|CAA54371.1|
(X77091) trkA [Escherichia coli]
>gi|606224|gb|AAA58087.1| (U18997) TrkA protein of the
constitutive K+ transport system Trk [Escherichia coli]
>gi|1789685|gb|AAC76315.1| (AE000407) transport of
potassium [Escherichia coli K12]
Length = 458
Score = 85.4 bits (208), Expect = 5e-16
Identities = 68/227 (29%), Positives = 124/227 (53%), Gaps = 16/227 (7%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
I+++G G IG +AR LE + + V +IE N++RA E++E + +V GDA+DQ++L
Sbjct: 235 IMLVGGGNIGAGLARRLEKD-YSVKLIERNQQRAAELAEKLQNTIVFFGDASDQELLAEE 293
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
+I D F A+T D+ANI++ +LAK + K + +L +++ + ++ + DI
Sbjct: 294 HIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLI-----QRRAYVDLVQ-GSVIDIA 347
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
+SP+ + + + V R G AE I+ + D V G+ I E+ LP
Sbjct: 348 ISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPG 407
Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKG-QVIIFAKNSA-LQDVKKIME 222
++I AV +GN V+ + D + ++G VI+F + + DV+++ +
Sbjct: 408 TIIGAVV--RGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQ 452
Score = 78.8 bits (191), Expect = 5e-14
Identities = 58/233 (24%), Positives = 108/233 (45%), Gaps = 19/233 (8%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++G +A L E +D+ +++ N ER R + + V++G + +VL
Sbjct: 1 MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFDLRVVQGHGSHPRVLRE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
A +AD A+T D+ N++AC +A L I RI P + V++ + F
Sbjct: 61 AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP------DYVRDADKLFHS 114
Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL 172
D +++PE + + I+R + PG +V+ EG + + + G + +
Sbjct: 115 DAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTM 174
Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
++P +A + P G T++ +V A A Q ++ +M +
Sbjct: 175 REHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIA---ASQHIRAVMSE 224
>sp|O07194|TRKA_MYCTU TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|7450650|pir||G70529
probable trkB protein - Mycobacterium tuberculosis
(strain H37RV) >gi|2181983|emb|CAB09482.1| (Z96072) trkB
[Mycobacterium tuberculosis]
Length = 220
Score = 85.0 bits (207), Expect = 7e-16
Identities = 56/224 (25%), Positives = 110/224 (49%), Gaps = 11/224 (4%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRER--AREISEYVSGLVIEGDATDQKVL 58
M + + GAG +G V R L GHD+ +IE N + A I E L GDA + +L
Sbjct: 1 MKVAVAGAGAVGRSVTRELVENGHDITLIERNPDHLDAAAIPEAHWRL---GDACELSLL 57
Query: 59 ENANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF 118
E+ +++ D A TG D N++ +LAK + R+ DP + +F + +
Sbjct: 58 ESIHLEEFDVVVAATGDDKVNVVLSLLAKTEFAVPRVVARVNDPRNEWLFNDAWGV---- 113
Query: 119 DIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKELNLPKD 177
D+ VS + A+ I + R++ R G A +++ + ++ GKP+++L LP+D
Sbjct: 114 DVAVSTPRMLASLIEEAVTIGDLVRLMEFRTGQANLVEITLPDNTPWGGKPVRKLQLPRD 173
Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
+ ++ + +++P D + +++ A A +++ +++
Sbjct: 174 AALVTIL-RGPRVIVPEADEPLEGGDELLFVAVTEAEEELSRLL 216
>sp|Q53949|TRKA_STRCO TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA HOMOLOG
>gi|7480330|pir||T34828 potassium uptake protein -
Streptomyces coelicolor >gi|2815362|emb|CAA16485.1|
(AL021530) potassium uptake protein [Streptomyces
coelicolor A3(2)]
Length = 223
Score = 84.7 bits (206), Expect = 9e-16
Identities = 61/228 (26%), Positives = 108/228 (46%), Gaps = 10/228 (4%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M+I+IMG GR+G+ +A+ LE +GH VA+I+ + R + G + G DQ L
Sbjct: 1 MHIVIMGCGRVGSALAQALEQQGHTVAVIDRDPTSFRRLGSSFGGRRVTGIGFDQDTLRE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDI 120
A I+ A AFAA++ D++NI+A +A+ + RI DP + ++++ R
Sbjct: 61 AGIEEAGAFAAVSSGDNSNIIAARVAREMFGVENVAARIYDPRRAEVYQ------RLGIP 114
Query: 121 VVSPEDIAANYIFRTLVTPGFDRVLL-PREGAEIIQFQVNEDCEVAGKPIKELNLPKDSL 179
V+ A+ + R L+ G + + P G ++ +V+ G I L + +
Sbjct: 115 TVATVRWTADQMLRRLLPSGAEPLWRDPTGGVQLA--EVHTSSSWVGHKISRLQ-EETGV 171
Query: 180 IIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEKKREE 227
+A G ++PS TV+ + V + + + V+ K EE
Sbjct: 172 RVAFVTRLGEAILPSSQTVLQEGDLVHVMMRTDEVHKVEAAFAKGPEE 219
>sp|P39445|TRKA_SALTY TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1084128|pir||S48001
potassium uptake protein sapG [similarity] - Salmonella
typhimurium >gi|565631|emb|CAA56663.1| (X80501) sapG
[Salmonella typhimurium]
Length = 458
Score = 83.5 bits (203), Expect = 2e-15
Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 16/227 (7%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
I+++G G IG +AR LE + + V +IE +++RA E++E + +V GDA+DQ++L
Sbjct: 235 IMLVGGGNIGAGLARRLEKD-YSVKLIERDQQRAAELAEKLQNTIVFFGDASDQELLAEE 293
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
+I D F A+T D+ANI++ +LAK + K + +L +++ + ++ + DI
Sbjct: 294 HIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLI-----QRRAYVDLVQ-GSVIDIA 347
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
+SP+ + + + V R G AE I+ + D V G+ I E+ LP
Sbjct: 348 ISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTSRVVGRVIDEIKLPPG 407
Query: 178 SLIIAVYDEKGNLVIPSGDTVIPKKG-QVIIFAKNSA-LQDVKKIME 222
++I AV +GN V+ + D + ++G VI+F + + DV+++ +
Sbjct: 408 TIIGAVV--RGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERLFQ 452
Score = 79.2 bits (192), Expect = 4e-14
Identities = 56/227 (24%), Positives = 107/227 (46%), Gaps = 7/227 (3%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++G +A L E +D+ +++ N ER R + + V++G + +VL
Sbjct: 1 MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFDLRVVQGHGSHPRVLRE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRY-FD 119
A +AD A+T D+ N++AC +A L I RI P + +++ + D
Sbjct: 61 AGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSPDYVRDADKLFHSEAVPID 120
Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPIKEL--NLPK 176
+++PE + + I+R + PG +V+ EG + + + G + + ++P
Sbjct: 121 HLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKAYYGGPLIGNALSTMREHMPH 180
Query: 177 DSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIMEK 223
+A + P G T++ +V A A Q ++ +M +
Sbjct: 181 IDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIA---ASQHIRAVMSE 224
>pir||D81063 Trk system potassium uptake protein TrkA NMB1614 [imported] -
Neisseria meningitidis (group B strain MD58, group A
strain Z2491) >gi|7226864|gb|AAF41966.1| (AE002511) Trk
system potassium uptake protein TrkA [Neisseria
meningitidis MC58] >gi|7380452|emb|CAB85038.1|
(AL162757) potassium uptake protein [Neisseria
meningitidis Z2491]
Length = 470
Score = 77.6 bits (188), Expect = 1e-13
Identities = 70/230 (30%), Positives = 113/230 (48%), Gaps = 15/230 (6%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSG-LVIEGDATDQKVLENA 61
I+I G G IG +A+ LE ++V IIE RA I+E + LV++G ATD+ +L+N
Sbjct: 243 IMIAGGGNIGYRLAKQLE-HAYNVKIIECRPRRAEWIAENLDNTLVLQGSATDETLLDNE 301
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
I D F ALT D++NI++ +LAK+L K R+ + + ++ E + DIV
Sbjct: 302 YIDEIDVFCALTNDDESNIMSALLAKNLGAK-----RVIGIVNRSSYVDLLEGNK-IDIV 355
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNED---CEVAGKPIKELNLPKD 177
VSP I I + V R G AE I+ + D + G+ I + P+
Sbjct: 356 VSPHLITIGSILAHIRRGDIVAVHPIRRGTAEAIEVVAHGDKKTSAIIGRRISGIKWPEG 415
Query: 178 SLIIAVYDE-KGNLVIPSGDTVIPKKGQVIIF--AKNSALQDVKKIMEKK 224
I AV G ++ + + G IIF ++ L +++K+++ K
Sbjct: 416 CHIAAVVRAGTGETIMGHHTETVIQDGDHIIFFVSRRRILNELEKLIQVK 465
>gb|AAA88557.1| (M29790) unknown protein [Streptomyces coelicolor A3(2)]
Length = 183
Score = 76.9 bits (186), Expect = 2e-13
Identities = 38/111 (34%), Positives = 65/111 (58%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M+I+IMG GR+G+ +A+ LE +GH VA+I+ + R + G + G DQ L
Sbjct: 1 MHIVIMGCGRVGSALAQALEQQGHTVAVIDRDPTSFRRLGSSFGGRRVTGIGFDQDTLRE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEV 111
A I+ A AFAA++ D++NI+A +A+ + RI DP + ++++ +
Sbjct: 61 AGIEEAGAFAAVSSGDNSNIIAARVAREMFGVENVAARIYDPRRAEVYQRL 111
>sp|P71354|TRKA_HAEIN TRK SYSTEM POTASSIUM UPTAKE PROTEIN TRKA >gi|1573621|gb|AAC22285.1|
(U32745) TRK system potassium uptake protein (trkA)
[Haemophilus influenzae Rd]
Length = 458
Score = 72.6 bits (175), Expect = 4e-12
Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 24/231 (10%)
Query: 3 IIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYV-SGLVIEGDATDQKVLENA 61
++I+G G + VA+ LE+ V +IE + RA+ ++E + LV GDA+DQ +L
Sbjct: 235 VMIVGGGNVAFGVAKRLENSC-TVKLIERDSNRAQALAEKLPKTLVFNGDASDQNLLFEE 293
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRY---- 117
+I++ D F +L+ D+ANI++ +LAK L K +L + + +
Sbjct: 294 HIESVDVFLSLSSDDEANIMSALLAKRLGAKKAMVL----------IQRIAYINLIQGGT 343
Query: 118 FDIVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVN---EDCEVAGKPIKELN 173
DI VSP+ + + + + V R G AE I+ + + G+ I EL
Sbjct: 344 IDIAVSPQQVTISALLGHVRKGDVKNVATLRHGIAEAIEIVAHGNVNTSNIVGRKIGELR 403
Query: 174 LPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQ--VIIFAKNSALQDVKKIME 222
LP +I A+ +GN VI + VI ++G VI + + +++K+ +
Sbjct: 404 LPMGIIIGALL--RGNDVIIARRQVIIEEGDHIVIYLSDKKNVPEIEKLFQ 452
Score = 70.6 bits (170), Expect = 1e-11
Identities = 60/231 (25%), Positives = 105/231 (44%), Gaps = 19/231 (8%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M III+GAG++GT +A L SE +D+ +++ + + + E V++G + KVL +
Sbjct: 1 MKIIILGAGQVGTTLAENLVSEDNDITLVDNESPQLQTLQEKHDLRVVQGSPSSPKVLRD 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYF-- 118
A +AD A+T D+ N++AC + L I RI + E ++E + F
Sbjct: 61 AGAADADLMVAVTASDEINMVACQMGYTLFNTPTRIARIRNS------EYLREKDKLFNN 114
Query: 119 -----DIVVSPEDIAANYIFRTLVTPGFDRVL-LPREGAEIIQFQVNEDCEVAGKPIKEL 172
D ++SPE++ + I R + PG +V I+ + + G +
Sbjct: 115 ENIPIDHLISPENLVTDEITRLIAYPGALQVAHFANNRISIVVVKAYYGGALVGYALSAF 174
Query: 173 --NLPKDSLIIAVYDEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
++P I G + P G T++ + G I F A + +K IM
Sbjct: 175 REHMPHIDCRIMSILRNGKPIRPQGSTIV-EAGDEITFI--CATEHIKAIM 222
>pir||G70430 conserved hypothetical protein aq_1503 - Aquifex aeolicus
>gi|2983887|gb|AAC07439.1| (AE000743) hypothetical
protein [Aquifex aeolicus]
Length = 218
Score = 72.6 bits (175), Expect = 4e-12
Identities = 58/214 (27%), Positives = 105/214 (48%), Gaps = 13/214 (6%)
Query: 5 IMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENANIK 64
++G GR G VA+ L G +V ++++ + ++ISE V+ + DA D+K LE A +
Sbjct: 7 VIGLGRFGFYVAKTLAELGAEVIAVDVDENKVKQISEIVTHAYV-ADALDEKALEEAGVF 65
Query: 65 NADAFAALTGRD-DANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIVVS 123
NAD G++ +A+I ++ K K + + + + K+ E + + VV
Sbjct: 66 NADTAIVSIGQNVEASIFVVVILKEKGVKEI-VAKAINQLHGKVLERLGVAR-----VVY 119
Query: 124 PEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNEDCEVAGKPIKELNLPK--DSLII 181
PE A + +L+ G + G I + + E+ GK +KEL+L K D ++
Sbjct: 120 PEMETAIKLAHSLLLKGLIEEIPFAPGYSIFEIKTPENFH--GKSLKELDLRKRYDITVL 177
Query: 182 AVYDEKGNLVI-PSGDTVIPKKGQVIIFAKNSAL 214
AV G +V+ PSGD V+ K+ +++ +
Sbjct: 178 AVKKPDGKIVVNPSGDYVLDKEDTLLVLGNKEKM 211
>pir||G75284 probable potassium channel - Deinococcus radiodurans (strain R1)
>gi|6460150|gb|AAF11884.1|AE002065_1 (AE002065)
potassium channel, putative [Deinococcus radiodurans]
Length = 320
Score = 71.8 bits (173), Expect = 6e-12
Identities = 59/207 (28%), Positives = 96/207 (45%), Gaps = 17/207 (8%)
Query: 2 YIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENA 61
+ I+ G G++G VA L G V +I+ R E +E + GDATD+ VL A
Sbjct: 107 HTIVCGYGQVGEAVATALRGAGRTVVVIDQ-RPAHLEWAEAHGLYTLVGDATDEDVLRRA 165
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
I++A A ++ D AN+ + AK LNP + I R +D + K + D
Sbjct: 166 GIEHAAALVSVLSSDPANLYVVLSAKGLNPGLRVIARASDESAAR-----KMRRAGADEG 220
Query: 122 VSPEDIAANYIFRTLVTPGFDRVLLPREGAEIIQFQVNE---DCEVAGKPIKELNLPKDS 178
V+P ++ N I ++ P R+L +E F V E + G+ ++ L +
Sbjct: 221 VNPYQLSGNRIAGMMLAPHLARLLSGDVSSE--HFTVRELDVPAALVGQTVEHLGRSTGA 278
Query: 179 LIIAVYDEKGNL------VIPSGDTVI 199
L++AV+ L V+ +GDTV+
Sbjct: 279 LVVAVWRGGQALRGRPQEVLQAGDTVL 305
>pir||F70529 probable trkA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2181982|emb|CAB09481.1| (Z96072) trkA [Mycobacterium
tuberculosis] >gi|2582554|gb|AAC69359.1| (AF026541) CeoB
[Mycobacterium tuberculosis]
Length = 227
Score = 71.0 bits (171), Expect = 1e-11
Identities = 38/111 (34%), Positives = 63/111 (56%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
M +++MG GR+G VA L GH+VAII+ + +S +G + G D+ VL
Sbjct: 1 MRVVVMGCGRVGASVADGLSRIGHEVAIIDRDSAAFNRLSPQFAGERVLGQGFDRDVLLR 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEV 111
A I+ ADAFAA++ D++NI++ LA+ + RI D + +++E +
Sbjct: 61 AGIQGADAFAAVSSGDNSNIISARLARETFGVPRVVARIYDAKRAEVYERL 111
>pir||S76263 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001490|dbj|BAA10115.1| (D64000) hypothetical
protein [Synechocystis sp.]
Length = 226
Score = 69.9 bits (168), Expect = 2e-11
Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 1 MYIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLEN 60
MYI+I G G +G+ +A+ L GH VA ++ + + E + + EG A + VL
Sbjct: 1 MYILIGGMGSMGSNLAKNLLKMGHTVAAVDTDPLACQYAREKIGVMAFEGSAVNTSVLLE 60
Query: 61 ANIKNADAFAALTGRDDANILACILAKHLN-PKIMTILRITDPGKKKIFEEVKELKRYFD 119
A ++ A A A D N+ L+KH P+I ++R++D F E L
Sbjct: 61 AGVRKAGAVIAALQEDALNLALVTLSKHYGVPQI--VVRMSDGD----FAEPYRLAGATH 114
Query: 120 IVVSPEDIAANYIFRTLVTPGFDRVLLPREG-AEIIQFQVNEDCEVAGKPI----KELNL 174
I +S ++A N + + P D ++ +G E+++ + +C + G+ + ++
Sbjct: 115 I-ISTTELALNRVINAIEYPQVDAMMHFEQGQIEVLKLSIPPNCTIVGRSVAAIAQDPRF 173
Query: 175 PKDSLIIAVY-DEKGNLVIPSGDTVIPKKGQVIIFAKNSALQDVKKIM 221
P +LII + +L IP+G+T++ ++ K ++ + M
Sbjct: 174 PSGTLIIGYQANAHEDLKIPNGNTLLEDGSTILAVTKPELVRQLIDFM 221
>pir||F70327 conserved hypothetical protein aq_303 - Aquifex aeolicus
>gi|2983007|gb|AAC06619.1| (AE000683) hypothetical
protein [Aquifex aeolicus]
Length = 368
Score = 69.5 bits (167), Expect = 3e-11
Identities = 62/235 (26%), Positives = 109/235 (46%), Gaps = 11/235 (4%)
Query: 2 YIIIMGAGRIGTLVARMLESEGHDVAIIEMNRERAREISEYVSGLVIEGDATDQKVLENA 61
+ II+G + + R+L ++ +++ RE R+I E I + + VLE A
Sbjct: 132 HFIIVGFNKTSQELIRLLRKRKIEIVVVDSRREVERQIKESKVKYYIIEEPYKRVVLEAA 191
Query: 62 NIKNADAFAALTGRDDANILACILAKHLNPKIMTILRITDPGKKKIFEEVKELKRYFDIV 121
I A G D NI + A+ + PK + + ++++EL +V
Sbjct: 192 GIYKAMGMVVNLGDDAKNIAVIVTARLMRPKKEDFFIYSFASSEDTAQKLEELGANRAVV 251
Query: 122 ---VSPEDIAANYIFR---TLVTPGFDRVLLPRE-GAEIIQFQVNEDCEVAGKPIKELNL 174
+ +AA Y+F ++ FDR+ E +I++ V ED E+ GK +KEL+L
Sbjct: 252 PYRLLATRVAA-YVFHAGSAFISDLFDRIAFGEETEIDILEVTVPEDSELVGKQLKELDL 310
Query: 175 PKD--SLIIAVYDEKGNLVIP-SGDTVIPKKGQVIIFAKNSALQDVKKIMEKKRE 226
K+ +IAV G L++ SG+T I +I+F L+ ++I+ +K E
Sbjct: 311 RKNLGVTVIAVRKPDGKLIVTVSGETKIEPGDTLILFGHPKNLRKAQRILLRKVE 365
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79733441
Number of Sequences: 2977
Number of extensions: 3355662
Number of successful extensions: 11196
Number of sequences better than 1.0e-10: 30
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11126
Number of HSP's gapped (non-prelim): 40
length of query: 227
length of database: 189,106,746
effective HSP length: 57
effective length of query: 170
effective length of database: 154,992,987
effective search space: 26348807790
effective search space used: 26348807790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)