BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1179 (PAB1179) DE:Hypothetical protein
         (108 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75029 hypothetical protein PAB1179 - Pyrococcus abyssi (st...   204  2e-52
pir||G71214 hypothetical protein PH1983 - Pyrococcus horikoshii ...   166  4e-41

>pir||B75029 hypothetical protein PAB1179 - Pyrococcus abyssi (strain Orsay)
           >gi|5459186|emb|CAB50672.1| (AJ248288) hypothetical
           protein [Pyrococcus abyssi]
           Length = 108
           
 Score =  204 bits (513), Expect = 2e-52
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MIPMEDVLREIIKAERDAEERIERAKEEAKAIIRKAREEARKIEEETLKKAEEEAQKLIE 60
           MIPMEDVLREIIKAERDAEERIERAKEEAKAIIRKAREEARKIEEETLKKAEEEAQKLIE
Sbjct: 1   MIPMEDVLREIIKAERDAEERIERAKEEAKAIIRKAREEARKIEEETLKKAEEEAQKLIE 60

Query: 61  SKKKEGEEEAKRIMSEGEAEISEILSKARDSEKFEKAVSECLKIIRGI 108
           SKKKEGEEEAKRIMSEGEAEISEILSKARDSEKFEKAVSECLKIIRGI
Sbjct: 61  SKKKEGEEEAKRIMSEGEAEISEILSKARDSEKFEKAVSECLKIIRGI 108


>pir||G71214 hypothetical protein PH1983 - Pyrococcus horikoshii
           >gi|3258427|dbj|BAA31110.1| (AP000007) 123aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 123
           
 Score =  166 bits (417), Expect = 4e-41
 Identities = 85/108 (78%), Positives = 99/108 (90%)

Query: 1   MIPMEDVLREIIKAERDAEERIERAKEEAKAIIRKAREEARKIEEETLKKAEEEAQKLIE 60
           M+ ME+VLREIIKAER AEERIE+AKEEAK I+R+A+E+ARKIEEE +KKAE EAQKLIE
Sbjct: 16  MVQMEEVLREIIKAERLAEERIEKAKEEAKKIVREAKEDARKIEEEIVKKAEMEAQKLIE 75

Query: 61  SKKKEGEEEAKRIMSEGEAEISEILSKARDSEKFEKAVSECLKIIRGI 108
            KKKEGEEEAK+I+S GEAEISE+L+KA+  EKFE+AVSECLKIIRGI
Sbjct: 76  EKKKEGEEEAKKILSSGEAEISEMLTKAKSEEKFEEAVSECLKIIRGI 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.305    0.125    0.299 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30818605
Number of Sequences: 2977
Number of extensions: 1192085
Number of successful extensions: 47580
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47566
Number of HSP's gapped (non-prelim): 2
length of query: 108
length of database: 189,106,746
effective HSP length: 68
effective length of query: 40
effective length of database: 148,409,630
effective search space: 5936385200
effective search space used: 5936385200
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 43 (21.9 bits)
S2: 158 (66.0 bits)