BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1181 (atpK) DE:PROBABLE ATPASE PROTEOLIPID CHAIN (EC
3.6.1.34).
(158 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75028 probable H+-transporting ATP synthase (EC 3.6.1.34) ... 301 3e-81
pir||D71214 hypothetical protein PH1980 - Pyrococcus horikoshii ... 275 2e-73
sp|Q57674|ATPL_METJA PROBABLE ATPASE PROTEOLIPID CHAIN >gi|21279... 120 9e-27
pir||T44670 V-ATPase proteolipid [imported] - Desulfurococcus sp... 116 1e-25
pir||C69228 ATP synthase, subunit K - Methanobacterium thermoaut... 109 1e-23
sp|P43457|NTPK_ENTHR V-TYPE SODIUM ATP SYNTHASE SUBUNIT K (NA(+)... 94 6e-19
>pir||H75028 probable H+-transporting ATP synthase (EC 3.6.1.34) proteolipid
chain PAB1181 - Pyrococcus abyssi (strain Orsay)
>gi|5459184|emb|CAB50670.1| (AJ248288) PROBABLE ATPASE
PROTEOLIPID CHAIN (EC 3.6.1.34) [Pyrococcus abyssi]
Length = 158
Score = 301 bits (762), Expect = 3e-81
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MNVMEPIVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQ 60
MNVMEPIVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQ
Sbjct: 1 MNVMEPIVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQ 60
Query: 61 SIYGLITLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGLSAIPQGIIASSGI 120
SIYGLITLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGLSAIPQGIIASSGI
Sbjct: 61 SIYGLITLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGLSAIPQGIIASSGI 120
Query: 121 GAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL 158
GAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL
Sbjct: 121 GAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL 158
>pir||D71214 hypothetical protein PH1980 - Pyrococcus horikoshii
>gi|3258424|dbj|BAA31107.1| (AP000007) 162aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 162
Score = 275 bits (695), Expect = 2e-73
Identities = 144/162 (88%), Positives = 152/162 (92%), Gaps = 4/162 (2%)
Query: 1 MNVMEPIVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQ 60
M +M+PIVYV+LGMALGAGLAGAASSFGVGIAGAAAAGAVAEDE+NFRNALIL+GLPMTQ
Sbjct: 1 MKIMDPIVYVSLGMALGAGLAGAASSFGVGIAGAAAAGAVAEDERNFRNALILEGLPMTQ 60
Query: 61 SIYGLITLFLIGMTAGIIGGGGFKF----SNDLISSAILFGAGLLVGLTGLSAIPQGIIA 116
SIYGLITLFLIGM AGIIGGGGFKF + ++I SAILFGAGLLVGLTG SAIPQGIIA
Sbjct: 61 SIYGLITLFLIGMAAGIIGGGGFKFAEPTTENIIKSAILFGAGLLVGLTGFSAIPQGIIA 120
Query: 117 SSGIGAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL 158
SGIGAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL
Sbjct: 121 GSGIGAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL 162
>sp|Q57674|ATPL_METJA PROBABLE ATPASE PROTEOLIPID CHAIN >gi|2127955|pir||F64327
H+-transporting ATP synthase (EC 3.6.1.34) subunit K -
Methanococcus jannaschii >gi|1590959|gb|AAB98207.1|
(U67478) H+-transporting ATP synthase, subunit K (atpK)
[Methanococcus jannaschii]
Length = 220
Score = 120 bits (298), Expect = 9e-27
Identities = 63/156 (40%), Positives = 93/156 (59%), Gaps = 12/156 (7%)
Query: 3 VMEPIVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQSI 62
+++P++ A+G L G+AG S G GI GA+ AG VAED F A++ Q LP TQ +
Sbjct: 1 MVDPLILGAVGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGTAIVFQALPQTQGL 60
Query: 63 YGLITLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGLSAIPQGIIASSGIGA 122
YG + LI F +S +F AGL GL GLSAI QGI AS+G+GA
Sbjct: 61 YGFLVAILI------------LFVFKTVSPWAMFAAGLAAGLAGLSAIGQGIAASAGLGA 108
Query: 123 VSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIMSL 158
V+++ F + ++F+ + ET AI+GL+ AI+L++ +
Sbjct: 109 VAEDNSIFGKAMVFSVLPETQAIYGLLIAILLLVGV 144
>pir||T44670 V-ATPase proteolipid [imported] - Desulfurococcus sp. (strain SY)
(fragment) >gi|2104722|gb|AAB64412.1| (U96487) V-ATPase
proteolipid [Desulfurococcus sp. SY]
Length = 120
Score = 116 bits (289), Expect = 1e-25
Identities = 67/97 (69%), Positives = 80/97 (82%), Gaps = 8/97 (8%)
Query: 37 AGAVAEDEKNFRNALILQGLPMTQSIYGLITLFLIGMTAGIIGGGGFKF----SNDLISS 92
AG VAEDEKNF+NALIL+GLPMTQSIYGLITLFLI ++AGII GGGFKF +++++ S
Sbjct: 1 AGVVAEDEKNFKNALILEGLPMTQSIYGLITLFLILLSAGII-GGGFKFAQATTDNIVKS 59
Query: 93 AILFGAGLLVGLTGLSAIPQGIIASSGIGAVSKNPRT 129
AILFGAGL VGLTGLSAIPQ ++S + +V PRT
Sbjct: 60 AILFGAGLTVGLTGLSAIPQ--VSSRALESVPL-PRT 93
>pir||C69228 ATP synthase, subunit K - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622056|gb|AAB85455.1| (AE000869)
ATP synthase, subunit K [Methanobacterium
thermoautotrophicum]
Length = 162
Score = 109 bits (271), Expect = 1e-23
Identities = 63/158 (39%), Positives = 95/158 (59%), Gaps = 11/158 (6%)
Query: 7 IVYVALGMALGA-------GLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMT 59
+V +ALG AL A G AG S G GIA A + GAVAE+ F +I LP T
Sbjct: 1 MVEIALGTALAAIGAGVAVGFAGLGSGLGQGIAAAESVGAVAENSDMFARGIIFSTLPET 60
Query: 60 QSIYGLITLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGL-SAIPQGIIASS 118
Q+IYG + L+ + +G++GGG D+ + + GAG +G GL S + QGI ++S
Sbjct: 61 QAIYGFLIAILLLVFSGLLGGGK---GLDVTAGLVAVGAGAAIGFAGLGSGMGQGITSAS 117
Query: 119 GIGAVSKNPRTFTQNLIFAAMAETMAIFGLVGAIILIM 156
+GAV ++P F + +IF+A++ET AI+G + AI+L++
Sbjct: 118 SVGAVVEDPDMFARGIIFSALSETQAIYGFLIAILLMV 155
>sp|P43457|NTPK_ENTHR V-TYPE SODIUM ATP SYNTHASE SUBUNIT K (NA(+)-TRANSLOCATING ATPASE
SUBUNIT K) (SODIUM ATPASE PROTEOLIPID COMPONENT)
>gi|1075719|pir||C54392 Na+-ATPase complex 16K
proteolipid chain - Enterococcus hirae
>gi|416405|dbj|BAA03841.1| (D16334) Na+-ATPase K subunit
[Enterococcus hirae] >gi|472919|emb|CAA54237.1| (X76913)
v-type Na-ATPase [Enterococcus hirae]
>gi|487274|dbj|BAA04271.1| (D17462) Na+ -ATPase subunit
K [Enterococcus hirae]
Length = 156
Score = 94.4 bits (231), Expect = 6e-19
Identities = 57/152 (37%), Positives = 81/152 (52%), Gaps = 9/152 (5%)
Query: 7 IVYVALGMALGAGLAGAASSFGVGIAGAAAAGAVAEDEKNFRNALILQGLPMTQSIYGLI 66
+V+ L MA +G S+ GVG+ G AAA + F ALILQ LP TQ +YG +
Sbjct: 12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEKFGQALILQLLPGTQGLYGFV 71
Query: 67 TLFLIGMTAGIIGGGGFKFSNDLISSAILFGAGLLVGLTGL-SAIPQGIIASSGIGAVSK 125
FLI + G ++ GA L + TGL S I QG +A++GI ++K
Sbjct: 72 IAFLIFINLG--------SDMSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAK 123
Query: 126 NPRTFTQNLIFAAMAETMAIFGLVGAIILIMS 157
P T+ +IFAAM ET AI G V + +L+++
Sbjct: 124 KPEHATKGIIFAAMVETYAILGFVISFLLVLN 155
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.141 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51245356
Number of Sequences: 2977
Number of extensions: 2131458
Number of successful extensions: 11722
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11700
Number of HSP's gapped (non-prelim): 8
length of query: 158
length of database: 189,106,746
effective HSP length: 55
effective length of query: 103
effective length of database: 156,189,961
effective search space: 16087565983
effective search space used: 16087565983
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)