BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1183 (atpC) DE:H+-transporting ATP synthase, subunit C
(atpC)
(370 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75028 h+-transporting ATP synthase, chain C (atpc) PAB1183... 713 0.0
pir||A71214 probable H(+)-transporting ATP synthase subunit C - ... 588 e-167
pir||T44672 H+-transporting ATP synthase, chain C [imported] - D... 431 e-120
sp|Q57672|ATPC_METJA ATP SYNTHASE, SUBUNIT C >gi|2127950|pir||D6... 192 5e-48
pir||A69228 ATP synthase, subunit C - Methanobacterium thermoaut... 158 1e-37
gi|11498764 H+-transporting ATP synthase, subunit C (atpC) [Arch... 118 7e-26
sp|Q60184|ATPC_METMA ATP SYNTHASE, SUBUNIT C >gi|11266769|pir||T... 101 2e-20
sp|Q48330|ATPC_HALVO ATP SYNTHASE, SUBUNIT C >gi|11357098|pir||T... 80 4e-14
gb|AAG20279.1| (AE005102) H+-transporting ATP synthase subunit C... 76 4e-13
dbj|BAA09871.1| (D63799) vacuolar type ATP synthase subunit [The... 74 2e-12
emb|CAC11151.1| (AL445063) ATP synthase (subunit C) related prot... 73 4e-12
pir||G75487 v-type ATP synthase, C subunit - Deinococcus radiodu... 71 3e-11
>pir||F75028 h+-transporting ATP synthase, chain C (atpc) PAB1183 - Pyrococcus
abyssi (strain Orsay) >gi|5459182|emb|CAB50668.1|
(AJ248288) H+-transporting ATP synthase, subunit C
(atpC) [Pyrococcus abyssi]
Length = 370
Score = 713 bits (1821), Expect = 0.0
Identities = 370/370 (100%), Positives = 370/370 (100%)
Query: 1 MEWSTLTTIFDTSLAVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE 60
MEWSTLTTIFDTSLAVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE
Sbjct: 1 MEWSTLTTIFDTSLAVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE 60
Query: 61 SKSLQNFVVSLEDTDYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEI 120
SKSLQNFVVSLEDTDYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEI
Sbjct: 61 SKSLQNFVVSLEDTDYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEI 120
Query: 121 MLEEWDVRNIINVVKAKLSNMPPQDFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEE 180
MLEEWDVRNIINVVKAKLSNMPPQDFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEE
Sbjct: 121 MLEEWDVRNIINVVKAKLSNMPPQDFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEE 180
Query: 181 PLRRLLLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLR 240
PLRRLLLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLR
Sbjct: 181 PLRRLLLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLR 240
Query: 241 AKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVES 300
AKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVES
Sbjct: 241 AKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVES 300
Query: 301 GNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPE 360
GNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPE
Sbjct: 301 GNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPE 360
Query: 361 KIKEMVGELA 370
KIKEMVGELA
Sbjct: 361 KIKEMVGELA 370
>pir||A71214 probable H(+)-transporting ATP synthase subunit C - Pyrococcus
horikoshii >gi|3258421|dbj|BAA31104.1| (AP000007) 370aa
long hypothetical H(+)-transporting ATP synthase subunit
C [Pyrococcus horikoshii]
Length = 370
Score = 588 bits (1499), Expect = e-167
Identities = 286/370 (77%), Positives = 337/370 (90%)
Query: 1 MEWSTLTTIFDTSLAVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE 60
ME STLTTI DT+LAV+FTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE
Sbjct: 1 MEISTLTTILDTTLAVIFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAE 60
Query: 61 SKSLQNFVVSLEDTDYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEI 120
SK+LQNFVVSLEDTDY RL SLQSYN+ ++ERALDLSLVD++ELM+KIMPKRI+GLFEI
Sbjct: 61 SKTLQNFVVSLEDTDYSPRLASLQSYNLYEIERALDLSLVDLVELMIKIMPKRIRGLFEI 120
Query: 121 MLEEWDVRNIINVVKAKLSNMPPQDFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEE 180
+LEEWDVRNI NV+KAKLSN+PPQDFI+PAG+M KVKAM E+KTMEE+LVILEGT+YEE
Sbjct: 121 LLEEWDVRNITNVIKAKLSNLPPQDFIIPAGRMFPKVKAMVESKTMEEILVILEGTEYEE 180
Query: 181 PLRRLLLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLR 240
PLR+LLL EI LQ FELELYK++YSKLL+Y +SRKGEEK+I+ EF+ MLIDY NIS +LR
Sbjct: 181 PLRKLLLKEIDLQAFELELYKIYYSKLLKYASSRKGEEKLISEEFIKMLIDYRNISIILR 240
Query: 241 AKLSSLAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVES 300
AKLS + E+I+ L+IPGG LS++ +E+M++SEDV+MALGELEGT+YG+ L++VREAVE
Sbjct: 241 AKLSGMPSEEIKSLLIPGGMLSRAVLESMLSSEDVMMALGELEGTRYGDALKDVREAVEG 300
Query: 301 GNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPE 360
G I+ VE ALR+YIL RMKELSQFYPLSVAVA+ YLL++ESEVRKLKA+AKLIED KPE
Sbjct: 301 GRIDKVEEALRRYILNRMKELSQFYPLSVAVALTYLLERESEVRKLKAVAKLIEDKAKPE 360
Query: 361 KIKEMVGELA 370
KIKE++GE+A
Sbjct: 361 KIKELIGEMA 370
>pir||T44672 H+-transporting ATP synthase, chain C [imported] - Desulfurococcus
sp. (strain SY) >gi|2104724|gb|AAB64414.1| (U96487)
V-ATPase C subunit [Desulfurococcus sp. SY]
Length = 364
Score = 431 bits (1096), Expect = e-120
Identities = 212/365 (58%), Positives = 286/365 (78%), Gaps = 4/365 (1%)
Query: 6 LTTIFDTSLAVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAESKSLQ 65
+T I +T++AVVFTWV YKT +IIWKYTPYSYPNARI+AMEA+LLT+Q+F+ELAES++LQ
Sbjct: 4 VTGILNTTIAVVFTWVGYKTARIIWKYTPYSYPNARIKAMEAKLLTEQKFNELAESRTLQ 63
Query: 66 NFVVSLEDTDYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEIMLEEW 125
NFVV+LEDTDY L + SY +E+VE+AL+ +L ELM KI+PKR KG FE++LE W
Sbjct: 64 NFVVNLEDTDYKDYLADVSSYTVEEVEKALERALAGTYELMFKILPKRSKGFFELLLEGW 123
Query: 126 DVRNIINVVKAKLSNMPPQDFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEEPLRRL 185
DVRNI NVVKAKL+N P D+++ G ML KVKAMAEAKT+EE+LVILEGT YEE ++L
Sbjct: 124 DVRNIANVVKAKLANEPASDYVVELGTMLPKVKAMAEAKTLEEILVILEGTPYEEVYQKL 183
Query: 186 LLNEITLQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSS 245
LL EI + FE ELY++HY KLL Y SRK +E+II EFV + ID NI T LRAK +
Sbjct: 184 LLGEIDVTRFETELYRMHYGKLLSYALSRKDDERIILEEFVRLSIDRVNILTALRAKKAG 243
Query: 246 LAQEDIRKLIIPGGTLSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVESGNIES 305
L+ E+I+ ++IPGGT+ ++ +++ + MAL EL+ TKYG+V+R+VRE +E ++
Sbjct: 244 LSAEEIKPMLIPGGTVK---LDPLLHVDSFDMALAELDSTKYGQVIRDVREEIEK-DLSV 299
Query: 306 VEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIKEM 365
+E AL +I+ R+ EL +FYPLS+A ++Y+L++E E+RKL+AIAKLIE+GV+PE+IKE+
Sbjct: 300 LEKALNDHIIERISELERFYPLSIATPLSYVLRREREIRKLRAIAKLIENGVEPERIKEL 359
Query: 366 VGELA 370
GE+A
Sbjct: 360 AGEVA 364
>sp|Q57672|ATPC_METJA ATP SYNTHASE, SUBUNIT C >gi|2127950|pir||D64327 H+-transporting ATP
synthase (EC 3.6.1.34) subunit C - Methanococcus
jannaschii >gi|1590956|gb|AAB98202.1| (U67477)
H+-transporting ATP synthase, subunit C (atpC)
[Methanococcus jannaschii]
Length = 399
Score = 192 bits (483), Expect = 5e-48
Identities = 127/388 (32%), Positives = 219/388 (55%), Gaps = 30/388 (7%)
Query: 3 WSTLTTIFDTSLA------------VVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLL 50
+S + T FD L +V W+ +++ PY+Y NARIR+ EA+L
Sbjct: 15 YSAIMTYFDNPLTLLIVVATIIIVLIVIVWIT----KMVIDLAPYAYVNARIRSKEAKLF 70
Query: 51 TDQRFSELAESKSLQNFVVSLEDTDYGKRLTSLQSYNIED---VERALDLSLVDVIELMV 107
D + +EL ES SL+ V LEDTDYG+ + + + ++D VE+ALD+ L D+ L+
Sbjct: 71 DDAKLNELIESGSLEELVGLLEDTDYGQYVIEVMN-ELKDPVAVEKALDMYLADLYGLIY 129
Query: 108 KIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPPQD---FIMPAGKM-LQKVKAMAEA 163
+I P K + ++ +++D++NI +++AK + ++ ++P G + ++K+K +AE
Sbjct: 130 RISPDSAKKVLKVFAKKFDIKNIKTLIRAKFVGLSAEETYALLIPLGNIPVEKLKELAEV 189
Query: 164 KTMEEMLVILEGTDYEEPLRRLLLN---EITLQEFELELYKVHYSKLLRYVNSRKGEEKI 220
KT+EE++ L+GT+Y + L+ L N + FEL L K +Y + LR +G+E+
Sbjct: 190 KTVEEVVRGLDGTEYFKILQEELSNYDQTSNIIGFELALDK-YYLESLRKTIMTEGKEED 248
Query: 221 IASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLI-IPGGTLSKSTIEAMINSEDVVMAL 279
I EFV +ID N+ +L+ K L+ E++ K + + G L+ ++ ++++ + L
Sbjct: 249 IFREFVGTIIDVENLKVILKGKADGLSAEELSKYVTLTGYELADWKLKDLMSAGGIEGVL 308
Query: 280 GELEGTKYGEVLREVREAVE-SGNIESVEIALRKYILRRMKELSQFYPLSVAVAVAYLLQ 338
LEGT Y EVL E E E + +I + E AL K++L + K+LS P V + ++
Sbjct: 309 SGLEGTSYAEVLAEAMEEYEKTKSIYAFEKALDKFVLEKGKKLSTRKPFGVGPIIGLIVS 368
Query: 339 KESEVRKLKAIAKLIEDGVKPEKIKEMV 366
KE EV+ LKAI K + +KPE+I+ ++
Sbjct: 369 KELEVKNLKAIIKGKIENLKPEEIRSLL 396
>pir||A69228 ATP synthase, subunit C - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622054|gb|AAB85453.1| (AE000869)
ATP synthase, subunit C [Methanobacterium
thermoautotrophicum]
Length = 385
Score = 158 bits (395), Expect = 1e-37
Identities = 108/362 (29%), Positives = 189/362 (51%), Gaps = 16/362 (4%)
Query: 15 AVVFTWVAYKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDT 74
A++ V T + I P++YPNAR+RA RLL +++ SE+ E++S++ F L
Sbjct: 29 AIIGAIVVIATIRPILDLFPFAYPNARVRARIGRLLNEKQLSEILETESMEEFKNYLRGL 88
Query: 75 -DYGKRLTSLQSYNIEDVERALDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINV 133
DY K + +E+AL+ L + E++ +I P I+ F L+ WDVRNI ++
Sbjct: 89 PDYAKYIDRFP------IEKALESQLAETYEMVSQIAPASIRDPFRANLKRWDVRNIKSL 142
Query: 134 VKAKLSNMPPQD---FIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEEPLRRLLLN-E 189
+ AK + + ++ ++P G++ + ++ +A+A +++E++ LE T+Y L L E
Sbjct: 143 ITAKAAGLSAEETVNLLVPGGEVYEIIEGLADASSVQEVVTGLEATEYAGVLEDALSGYE 202
Query: 190 IT--LQEFELELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLA 247
T L E L + L+R V S + I + ++D +N+ +LRAK L+
Sbjct: 203 ETGMLLPIEAALDRKFLEGLIRTVGSPSDDNTKILHTYFGTMVDISNLKIILRAKADGLS 262
Query: 248 QEDIRKLIIPGG-TLSKSTIEAMINSEDVVMALGELEGTKYGEVLRE-VREAVESGNIES 305
+DI I+P G + + ++ ++ SEDV + LEGT YG++L E + E +G++
Sbjct: 263 YDDISPYIVPHGYQIREWKLKDLMESEDVSGVVSGLEGTDYGQMLSEALSEYTSTGSVAV 322
Query: 306 VEIALRKYILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAK-LIEDGVKPEKIKE 364
E L + R + + P V + +L +KE EV+ LK IA+ E G +KE
Sbjct: 323 FERVLEDNLNRMARNFALKKPFGVGPMIGFLSRKEVEVKNLKVIARSKREPGFPEAMVKE 382
Query: 365 MV 366
M+
Sbjct: 383 ML 384
>gi|11498764 H+-transporting ATP synthase, subunit C (atpC) [Archaeoglobus
fulgidus] >gi|7428289|pir||C69395 H+-transporting ATP
synthase, subunit C (atpC) homolog - Archaeoglobus
fulgidus >gi|2649417|gb|AAB90075.1| (AE001023)
H+-transporting ATP synthase, subunit C (atpC)
[Archaeoglobus fulgidus]
Length = 342
Score = 118 bits (294), Expect = 7e-26
Identities = 97/353 (27%), Positives = 174/353 (48%), Gaps = 28/353 (7%)
Query: 23 YKTGQIIWKYTPYSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTS 82
YK + W Y AR + M++RLL + F +L + V + +T+Y K +
Sbjct: 6 YKGNRAAWAYIV-----ARTKVMKSRLLKPEDFRKLLNME-FDEIVRYIGETEYKKEIDE 59
Query: 83 LQSYNIED---VERALDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLS 139
L Y ++ AL +L ++++ K L LE+WDV NIIN+++ K++
Sbjct: 60 L-GYKFTGPRLLDHALYANLARTYRKLIEVSFGASKFLIMKYLEKWDVWNIINIIRGKMA 118
Query: 140 NMPPQ---DFIMPAGKMLQKVKAMAEAKTMEEMLVILEGTDYEEPLRRLLLNEITLQEFE 196
N+ P+ D ++PAG+ K +EE++ EGT Y EPL + + + + E
Sbjct: 119 NVQPEVVDDILVPAGERDMDFWKTLLVKDIEEIVKSFEGTPYYEPLSK--IGSEDMSKIE 176
Query: 197 LELYKVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLII 256
LYKV+Y +LL+ +N K+ +F+ M ID N+ TLLR K ++I + I
Sbjct: 177 DGLYKVYYRELLK-LNPSDFAMKLFL-DFIKMEIDIRNVKTLLRLKAEDATPDEIMECTI 234
Query: 257 PGG-TLSKSTIE--AMINSEDVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKY 313
PGG L++ + A + ++++ A LEG + ++ +E + +VEI K
Sbjct: 235 PGGYELTEEELRKLAAMPIDEMIKA---LEGYWFWNDVQ-----IEGKEVAAVEIEFDKV 286
Query: 314 ILRRMKELSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIKEMV 366
++ + + + YPLS+ + Y++ K+ EV L+ + G+ E+I+ +
Sbjct: 287 WIKTISKRASNYPLSILPVLQYIVLKKVEVDNLRVLGWGKYYGLPSEEIERQM 339
>sp|Q60184|ATPC_METMA ATP SYNTHASE, SUBUNIT C >gi|11266769|pir||T45105 H+-transporting
ATP synthase (EC 3.6.1.34) chain C [imported] -
Methanosarcina mazei >gi|1199636|gb|AAC06373.1| (U47274)
A1AO H+ ATPase, subunit C [Methanosarcina mazei]
Length = 360
Score = 101 bits (248), Expect = 2e-20
Identities = 83/339 (24%), Positives = 167/339 (48%), Gaps = 14/339 (4%)
Query: 35 YSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTSL-QSYNIEDV-E 92
Y+Y R+RAM+++LL + + L + + +++++Y + L Y+ D+ E
Sbjct: 26 YAYAVTRVRAMKSKLLPKESYPRLL-NMGIDEITRFIQESEYKNDVDELAMKYSGGDLAE 84
Query: 93 RALDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPPQDFI---MP 149
AL+ +L + +V+I + L L+ +D+ NI +++ K+ N +D + +
Sbjct: 85 HALNRNLALTYDKLVRITSGELNYLIVAYLKRYDIWNIKTLLRGKIYNASVEDILESLIA 144
Query: 150 AGKMLQ-KVKAMAEAKTMEEMLVILEGTDYEEPLRRLLLNEITLQEFELELYKVHYSKLL 208
AG+ + +A T +E++ L+ T+Y L++ + L E EL K++Y+ L
Sbjct: 145 AGEFTYTSMSELAAKATYQEIVEALKHTEYYPLLQKF--DGTNLAYIENELDKIYYADLF 202
Query: 209 RYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQED-IRKLIIPGGTLSKSTIE 267
+ + +++ + ++ V + +D N+ L R K + + Q D I L+I GG K
Sbjct: 203 EAIGKPRSKDRKLFAQVVRLEVDVKNLINLFRLKKAGVMQPDEIMPLMIEGGLELKIEKL 262
Query: 268 AMINSEDVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKYILRRMKELSQFYPL 327
A + ++ V EL+ T+Y E + V + ++ ++E L +Y L LS P+
Sbjct: 263 AALPYDEFV---NELQRTQYWEAISGV-VGPDMISLTTLESRLTRYYLESSTILSHVSPI 318
Query: 328 SVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIKEMV 366
+V + Y++ K +E L+ I + E G+ E IK+ +
Sbjct: 319 TVVPILDYIIHKNNEATNLRIIFRGKETGLSDELIKDQL 357
>sp|Q48330|ATPC_HALVO ATP SYNTHASE, SUBUNIT C >gi|11357098|pir||T47201 H+-transporting
ATP synthase (EC 3.6.1.34) chain C [validated] -
Haloferax volcanii >gi|693940|emb|CAA56049.1| (X79516)
membrane ATPase [Haloferax volcanii]
>gi|1098055|prf||2115218B ATPase [Haloferax volcanii]
Length = 348
Score = 80.0 bits (194), Expect = 4e-14
Identities = 85/338 (25%), Positives = 158/338 (46%), Gaps = 17/338 (5%)
Query: 37 YPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTSLQSY--NIEDVERA 94
Y AR+RA + L D+ + +L + +E+++Y + +L S ++ +E A
Sbjct: 11 YVIARVRARRSALFGDEEYRKLVRMGPAE-IARFMEESEYEAEVNALGSRFSGVDLIEYA 69
Query: 95 LDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPPQDF---IMPAG 151
L+ +L ++ R+ L L ++D N+ V++ S ++ ++ G
Sbjct: 70 LNQNLAKQFNDILDWADGRLYDLIARYLRKFDAWNVKTVIRGLYSGASREEVESDLIRXG 129
Query: 152 KMLQK-VKAMAEAKTMEEMLVILEGTDYEEPLRRLL--LNEI-TLQEFELELYKVHYSKL 207
+ + + + A +EE++ +L GT + + L E+ L E + + Y +L
Sbjct: 130 EFDDRLISRLLXAGEIEEVVSVLSGTIFGDGLAAAYEEYEEVGVLVPLENAVDRAFYEQL 189
Query: 208 LRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGTLSKST-I 266
L + GEE EF+ ID+ N LR S A D I GGTL ++T +
Sbjct: 190 LD--DLVVGEEAKQYREFLEAEIDFRNARNALRIARSG-ADLDPVDYFIEGGTLFRATEL 246
Query: 267 EAMINSEDVVMALGELEGTKYGEVLREVREAVESGN-IESVEIALRKYILRRMKELSQFY 325
++ S D +++ ++ ++YG+ L +E+ + + E AL +L L +
Sbjct: 247 ASLATSPDELVS--KIRDSRYGDRLSAALSDLEAADSLIGFERALDAALLEYADTLGYVF 304
Query: 326 PLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIK 363
PLSV V+Y+L KE EV ++AIA+ E G+ P+ I+
Sbjct: 305 PLSVTPIVSYILAKEREVDNIRAIARGREAGLDPDAIE 342
>gb|AAG20279.1| (AE005102) H+-transporting ATP synthase subunit C; AtpC
[Halobacterium sp. NRC-1]
Length = 352
Score = 76.5 bits (185), Expect = 4e-13
Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 17/342 (4%)
Query: 35 YSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTSLQSYN--IEDVE 92
Y Y ARIR A L D + +L + + +ED+ Y + SL S + ++ VE
Sbjct: 9 YEYVVARIRHRRAGLFGDDEYRKLLRMGTGE-IARFMEDSTYKDAVDSLASRHRGMDLVE 67
Query: 93 RALDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPPQDF---IMP 149
AL+ L + ++ R+ L ++D N+ V + S+ ++
Sbjct: 68 YALNEGLAAEFDALLSWSEGRLYDQLAKYLRKFDAWNVKTVFRGLYSHADTDAIRADLVD 127
Query: 150 AGKM-LQKVKAMAEAKTMEEMLVILEGT---DYEEPLRRLLLNEITLQEFELELYKVHYS 205
AG+ + + A ++E ++ L GT Y EP +E +L E + + +Y
Sbjct: 128 AGEFDAAFLDELLSADSVETVVDALSGTIFDTYLEPAFADYEDEDSLVPLENAVDRAYYE 187
Query: 206 KL--LRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGTLSK 263
L + + + + + +EF+ ID+ N LR S ++ D I GGTL +
Sbjct: 188 NLNPSQPATAAQDSPEALYAEFLTAEIDFRNARNALRLARSGVSV-DPAAYFIEGGTLFE 246
Query: 264 -STIEAMINSEDVVMALGELEGTKYGEVLREVREAVE-SGNIESVEIALRKYILRRMKEL 321
S + ++ + +++ ++ + YG+ L A+E S ++ E AL + +L L
Sbjct: 247 ASEMTTLVERQSDLVS--RIQDSTYGDELSTALTALEESDSLIGFEHALDRALLSYSDHL 304
Query: 322 SQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIK 363
S YP SV +AY+L KE EV ++AIA+ E G+ ++I+
Sbjct: 305 SYVYPTSVCPVLAYVLAKEREVDNIRAIARGREAGMSEDEIQ 346
>dbj|BAA09871.1| (D63799) vacuolar type ATP synthase subunit [Thermus thermophilus]
Length = 323
Score = 74.1 bits (179), Expect = 2e-12
Identities = 80/335 (23%), Positives = 156/335 (45%), Gaps = 22/335 (6%)
Query: 35 YSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTSLQSYNIEDVERA 94
++Y NAR+R LL + F E A S +F+ L +T YG L + DV+RA
Sbjct: 5 FAYLNARVRVRRGTLLKESFFQE-ALDLSFADFLRLLSETVYGGELAG---QGLPDVDRA 60
Query: 95 LDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPPQDFIMPAGKML 154
+ + ++ + +++ + ++L D+ N+ +++AK + P ++ ++ G +
Sbjct: 61 VLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLR 120
Query: 155 QKVKAMA-EAKTMEEMLVILE--GTDYEEPLRRLLLNEITLQEFELELYKVHYSKLLRYV 211
++V A EA+ M +L G LR +L L E L K + + +
Sbjct: 121 EEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAK-- 178
Query: 212 NSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGTLSKSTIEAMIN 271
+ KG ++ +++ + +D N+ T + + S LA + + GG A +
Sbjct: 179 -AAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPD---AFFLKGGRFVDRVRFARLM 234
Query: 272 SEDVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKYILRRMKELSQFYPLSVAV 331
D + L EL GT + L VR+ ++++E LR +L+ K+ Q PL V +
Sbjct: 235 EGDYAV-LDELSGTPFSG-LSGVRD------LKALERGLRCVLLKEAKKGVQD-PLGVGL 285
Query: 332 AVAYLLQKESEVRKLKAIAKLIEDGVKPEKIKEMV 366
+AY+ ++E E +L+ +A+ G+ +++E V
Sbjct: 286 VLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEV 320
>emb|CAC11151.1| (AL445063) ATP synthase (subunit C) related protein [Thermoplasma
acidophilum]
Length = 356
Score = 73.4 bits (177), Expect = 4e-12
Identities = 77/344 (22%), Positives = 151/344 (43%), Gaps = 26/344 (7%)
Query: 41 RIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDYGKRLTSLQSY--NIEDVERALDLS 98
R+R + + Q+ ++ ++ L + Y + SL + + + E A++
Sbjct: 11 RLRVYQTEFFSRQQIDQMLSMTDPKDVSAFLYNGPYREDYDSLSAVFKDPDLTEMAINRH 70
Query: 99 LVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSN---MPPQDFIM-----PA 150
+V L++ +P K L +WD+ NI V+ AK + F++ P
Sbjct: 71 MVRNNRLVLFAIPPLAKNAVVAYLSKWDIENIKTVISAKFLGHGIREAEPFLVSFRDIPL 130
Query: 151 GKML-----QKVKAMAEAKTMEEMLVILEGTDYEEPLRRLL-----LNEITLQEFELELY 200
G M + + M +E +L L Y + + L +I+ + L+ Y
Sbjct: 131 GIMSGTLTNEDYRNMINLPNIEAILNYLARFGYGTYMMQFLEDYRKTGDISPMLYSLDRY 190
Query: 201 KVHYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGT 260
+Y LL + +G+E + + +V ID NI T+L+ K+ + E + II GG
Sbjct: 191 --YYMNLLSALKYYRGDEAPVLN-YVRSDIDRQNIVTMLKGKVLKIPFERMSSGIIDGGN 247
Query: 261 LSKSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKYILRRMKE 320
+ + + + +S+D V L+ +Y ++ ++ +E+G++ +IA+R I RR +
Sbjct: 248 IGVNRLREIYSSQDAVSVADALK--QYYDLEEPKKKYMETGDLYHFDIAIRNIIARRFLD 305
Query: 321 LSQFYPLSVAVAVAYLLQKESEVRKLKAIAKLIEDGVKPEKIKE 364
PLS+ ++L+ E E L+ I +G+ P +I E
Sbjct: 306 TMSMLPLSLDSLFYFILRSEIERHNLRTIYLSKVNGM-PREITE 348
>pir||G75487 v-type ATP synthase, C subunit - Deinococcus radiodurans (strain
R1) >gi|6458403|gb|AAF10276.1|AE001926_8 (AE001926)
v-type ATP synthase, C subunit [Deinococcus radiodurans]
Length = 352
Score = 70.6 bits (170), Expect = 3e-11
Identities = 75/329 (22%), Positives = 136/329 (40%), Gaps = 37/329 (11%)
Query: 35 YSYPNARIRAMEARLLTDQRFSELAESKSLQNFVVSLEDTDY--GKRLTSLQSYNIEDVE 92
YSY N R+R M +LL + S S Q F+ L +TD+ R T+ + + +++
Sbjct: 32 YSYINTRVRVMRTKLLDGRALDAALASGSYQEFLRVLSETDFAPNMRETTAEGAGLPELD 91
Query: 93 RALDLSLVDVIELMVKIMPKRIKGLFEIMLEEWDVRNIINVVKAKLSNMPP---QDFIMP 149
RAL +L D + ++ K E +L +WD+ N+ + + +S Q ++P
Sbjct: 92 RALSQNLFDTTQRVLGFADGDAKREIETLLMKWDLTNLKTLARGIVSGRGAETIQQNLIP 151
Query: 150 AGKMLQKVKAMAEAKTMEEMLVILEGTDYEEPLRRLLLNEIT-------LQEFELELYKV 202
G + V A T G PL ++ N +T L + E+ L +
Sbjct: 152 GGTIKPSVLQTASQSTDLASAATALGVG-GHPLAKVFRNAVTAYNTTGRLLDLEVLLDQG 210
Query: 203 HYSKLLRYVNSRKGEEKIIASEFVNMLIDYTNISTLLRAKLSSLAQEDIRKLIIPGGTLS 262
+Y RY + + +++ ID TN ++ +L L +PGG+L
Sbjct: 211 YY----RYATQVSRDTSL--RRYLSREIDITNALIARNSRGGTLD----TNLFVPGGSLD 260
Query: 263 KSTIEAMINSEDVVMALGELEGTKYGEVLREVREAVESGNIESVEIALRKYILRRMKELS 322
+ + G+ G ++ +E+ +IE E+A R + R + +
Sbjct: 261 AAGYGR--------LGAGDAGGN------ADITAILEAPSIEDAEVAARTALDRAARSSA 306
Query: 323 QFYPLSVAVAVAYLLQKESEVRKLKAIAK 351
V + + +L +KE EV KL+ I +
Sbjct: 307 VSDVEGVGIILDFLRRKEIEVAKLRLIGR 335
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.134 0.359
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116695489
Number of Sequences: 2977
Number of extensions: 4305247
Number of successful extensions: 15579
Number of sequences better than 1.0e-10: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 15527
Number of HSP's gapped (non-prelim): 13
length of query: 370
length of database: 189,106,746
effective HSP length: 62
effective length of query: 308
effective length of database: 152,000,552
effective search space: 46816170016
effective search space used: 46816170016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)