BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1184 (atpF) DE:H+-transporting ATP synthase, subunit F
(atpF)
(103 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75028 h+-transporting ATP synthase, chain F (atpf) PAB1184... 201 1e-51
pir||H71213 probable H(+)-transporting ATP synthase subunit F - ... 192 9e-49
pir||T44673 H+-transporting ATP synthase, chain G [imported] - D... 141 2e-33
sp|Q57671|ATPF_METJA ATP SYNTHASE, SUBUNIT F >gi|2127953|pir||C6... 76 1e-13
pir||H69227 ATP synthase, subunit F - Methanobacterium thermoaut... 67 5e-11
>pir||E75028 h+-transporting ATP synthase, chain F (atpf) PAB1184 - Pyrococcus
abyssi (strain Orsay) >gi|5459181|emb|CAB50667.1|
(AJ248288) H+-transporting ATP synthase, subunit F
(atpF) [Pyrococcus abyssi]
Length = 103
Score = 201 bits (507), Expect = 1e-51
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ
Sbjct: 1 MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
Query: 61 RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR
Sbjct: 61 RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
>pir||H71213 probable H(+)-transporting ATP synthase subunit F - Pyrococcus
horikoshii >gi|3258420|dbj|BAA31103.1| (AP000007) 103aa
long hypothetical H(+)-transporting ATP synthase subunit
F [Pyrococcus horikoshii]
Length = 103
Score = 192 bits (483), Expect = 9e-49
Identities = 95/103 (92%), Positives = 101/103 (97%)
Query: 1 MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
MKVV+MGDSDTV GFRLAG+HEAYEFD SELSIERARNKLKELVERDDVGIILITERLAQ
Sbjct: 1 MKVVIMGDSDTVVGFRLAGIHEAYEFDLSELSIERARNKLKELVERDDVGIILITERLAQ 60
Query: 61 RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
+IG+LPQVNLPIILQIPDKFGSIYGEELLREIVR+AVGIE+KR
Sbjct: 61 KIGELPQVNLPIILQIPDKFGSIYGEELLREIVRRAVGIEVKR 103
>pir||T44673 H+-transporting ATP synthase, chain G [imported] - Desulfurococcus
sp. (strain SY) >gi|2104725|gb|AAB64415.1| (U96487)
V-ATPase G subunit [Desulfurococcus sp. SY]
Length = 102
Score = 141 bits (352), Expect = 2e-33
Identities = 68/103 (66%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Query: 1 MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
MK+ V+GD DT GF+LAG HE Y F+ + L +ER RNKLKELVER DVGIILITER AQ
Sbjct: 1 MKIAVLGDRDTALGFKLAGAHEVYAFEDTPLEMERLRNKLKELVERGDVGIILITERFAQ 60
Query: 61 RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
R+ ++P V +PIILQ+PDK GS +GEE LREIVR+A+G+E+KR
Sbjct: 61 RV-EIPDVTIPIILQVPDKSGSKFGEEALREIVRRAIGVELKR 102
>sp|Q57671|ATPF_METJA ATP SYNTHASE, SUBUNIT F >gi|2127953|pir||C64327 H+-transporting ATP
synthase (EC 3.6.1.34) subunit F - Methanococcus
jannaschii >gi|1498994|gb|AAB98201.1| (U67477)
H+-transporting ATP synthase, subunit F (atpF)
[Methanococcus jannaschii]
Length = 98
Score = 75.7 bits (183), Expect = 1e-13
Identities = 40/103 (38%), Positives = 67/103 (64%), Gaps = 6/103 (5%)
Query: 1 MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
MKV V+GD +T GFRLAG+ + YE E +++ + EL +++ I+ITER+A+
Sbjct: 1 MKVGVVGDRETAIGFRLAGLTDVYEVKNDEEAVKA----INELANNENIAFIIITERIAE 56
Query: 61 RIGD-LPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIK 102
I D L +N +I++IPDK G + + ++E++RKA+G+ +K
Sbjct: 57 SIKDKLKNIN-KVIVEIPDKHGKLERIDPVKELIRKAIGVSMK 98
>pir||H69227 ATP synthase, subunit F - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622053|gb|AAB85452.1| (AE000869)
ATP synthase, subunit F [Methanobacterium
thermoautotrophicum]
Length = 106
Score = 67.1 bits (161), Expect = 5e-11
Identities = 37/105 (35%), Positives = 62/105 (58%), Gaps = 11/105 (10%)
Query: 3 VVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQRI 62
+ V+GD DTVTGFRL GV E Y + + + E RN + RD II++TE++ +
Sbjct: 5 IAVVGDRDTVTGFRLGGVREGYVVETPDEAEETIRNLI-----RDGFSIIIVTEKIGDEL 59
Query: 63 GDLPQVN-----LPIILQIPDKFGSIYGE-ELLREIVRKAVGIEI 101
+ + LP+I++IPDK G E + LR+++++ +G+E+
Sbjct: 60 REFIEETTSSSALPMIIEIPDKTGPSERETDPLRDLIKRVIGVEM 104
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34478472
Number of Sequences: 2977
Number of extensions: 1227759
Number of successful extensions: 2989
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2983
Number of HSP's gapped (non-prelim): 5
length of query: 103
length of database: 189,106,746
effective HSP length: 53
effective length of query: 50
effective length of database: 157,386,935
effective search space: 7869346750
effective search space used: 7869346750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)