BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1184 (atpF) DE:H+-transporting ATP synthase, subunit F
(atpF)
         (103 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75028 h+-transporting ATP synthase, chain F (atpf) PAB1184...   201  1e-51
pir||H71213 probable H(+)-transporting ATP synthase subunit F - ...   192  9e-49
pir||T44673 H+-transporting ATP synthase, chain G [imported] - D...   141  2e-33
sp|Q57671|ATPF_METJA ATP SYNTHASE, SUBUNIT F >gi|2127953|pir||C6...    76  1e-13
pir||H69227 ATP synthase, subunit F - Methanobacterium thermoaut...    67  5e-11

>pir||E75028 h+-transporting ATP synthase, chain F (atpf) PAB1184 - Pyrococcus
           abyssi (strain Orsay) >gi|5459181|emb|CAB50667.1|
           (AJ248288) H+-transporting ATP synthase, subunit F
           (atpF) [Pyrococcus abyssi]
           Length = 103
           
 Score =  201 bits (507), Expect = 1e-51
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
           MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ
Sbjct: 1   MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60

Query: 61  RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
           RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR
Sbjct: 61  RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103


>pir||H71213 probable H(+)-transporting ATP synthase subunit F - Pyrococcus
           horikoshii >gi|3258420|dbj|BAA31103.1| (AP000007) 103aa
           long hypothetical H(+)-transporting ATP synthase subunit
           F [Pyrococcus horikoshii]
           Length = 103
           
 Score =  192 bits (483), Expect = 9e-49
 Identities = 95/103 (92%), Positives = 101/103 (97%)

Query: 1   MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
           MKVV+MGDSDTV GFRLAG+HEAYEFD SELSIERARNKLKELVERDDVGIILITERLAQ
Sbjct: 1   MKVVIMGDSDTVVGFRLAGIHEAYEFDLSELSIERARNKLKELVERDDVGIILITERLAQ 60

Query: 61  RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
           +IG+LPQVNLPIILQIPDKFGSIYGEELLREIVR+AVGIE+KR
Sbjct: 61  KIGELPQVNLPIILQIPDKFGSIYGEELLREIVRRAVGIEVKR 103


>pir||T44673 H+-transporting ATP synthase, chain G [imported] - Desulfurococcus
           sp. (strain SY) >gi|2104725|gb|AAB64415.1| (U96487)
           V-ATPase G subunit [Desulfurococcus sp. SY]
           Length = 102
           
 Score =  141 bits (352), Expect = 2e-33
 Identities = 68/103 (66%), Positives = 84/103 (81%), Gaps = 1/103 (0%)

Query: 1   MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
           MK+ V+GD DT  GF+LAG HE Y F+ + L +ER RNKLKELVER DVGIILITER AQ
Sbjct: 1   MKIAVLGDRDTALGFKLAGAHEVYAFEDTPLEMERLRNKLKELVERGDVGIILITERFAQ 60

Query: 61  RIGDLPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIKR 103
           R+ ++P V +PIILQ+PDK GS +GEE LREIVR+A+G+E+KR
Sbjct: 61  RV-EIPDVTIPIILQVPDKSGSKFGEEALREIVRRAIGVELKR 102


>sp|Q57671|ATPF_METJA ATP SYNTHASE, SUBUNIT F >gi|2127953|pir||C64327 H+-transporting ATP
           synthase (EC 3.6.1.34) subunit F - Methanococcus
           jannaschii >gi|1498994|gb|AAB98201.1| (U67477)
           H+-transporting ATP synthase, subunit F (atpF)
           [Methanococcus jannaschii]
           Length = 98
           
 Score = 75.7 bits (183), Expect = 1e-13
 Identities = 40/103 (38%), Positives = 67/103 (64%), Gaps = 6/103 (5%)

Query: 1   MKVVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQ 60
           MKV V+GD +T  GFRLAG+ + YE    E +++     + EL   +++  I+ITER+A+
Sbjct: 1   MKVGVVGDRETAIGFRLAGLTDVYEVKNDEEAVKA----INELANNENIAFIIITERIAE 56

Query: 61  RIGD-LPQVNLPIILQIPDKFGSIYGEELLREIVRKAVGIEIK 102
            I D L  +N  +I++IPDK G +   + ++E++RKA+G+ +K
Sbjct: 57  SIKDKLKNIN-KVIVEIPDKHGKLERIDPVKELIRKAIGVSMK 98


>pir||H69227 ATP synthase, subunit F - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622053|gb|AAB85452.1| (AE000869)
           ATP synthase, subunit F  [Methanobacterium
           thermoautotrophicum]
           Length = 106
           
 Score = 67.1 bits (161), Expect = 5e-11
 Identities = 37/105 (35%), Positives = 62/105 (58%), Gaps = 11/105 (10%)

Query: 3   VVVMGDSDTVTGFRLAGVHEAYEFDFSELSIERARNKLKELVERDDVGIILITERLAQRI 62
           + V+GD DTVTGFRL GV E Y  +  + + E  RN +     RD   II++TE++   +
Sbjct: 5   IAVVGDRDTVTGFRLGGVREGYVVETPDEAEETIRNLI-----RDGFSIIIVTEKIGDEL 59

Query: 63  GDLPQVN-----LPIILQIPDKFGSIYGE-ELLREIVRKAVGIEI 101
            +  +       LP+I++IPDK G    E + LR+++++ +G+E+
Sbjct: 60  REFIEETTSSSALPMIIEIPDKTGPSERETDPLRDLIKRVIGVEM 104


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.144    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34478472
Number of Sequences: 2977
Number of extensions: 1227759
Number of successful extensions: 2989
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2983
Number of HSP's gapped (non-prelim): 5
length of query: 103
length of database: 189,106,746
effective HSP length: 53
effective length of query: 50
effective length of database: 157,386,935
effective search space: 7869346750
effective search space used: 7869346750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)