BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1188 (PAB1188) DE:CDP-ABEQUOSE SYNTHASE (EC 4.2.1.-)
(259 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75028 cdp-abequose synthase (EC 4.2.1.-) PAB1188 - Pyrococ... 547 e-155
pir||C71213 hypothetical protein PH1971 - Pyrococcus horikoshii ... 505 e-142
pir||T44677 conserved hypothetical protein [imported] - Desulfur... 446 e-124
pir||G70385 conserved hypothetical protein aq_990 - Aquifex aeol... 243 2e-63
pir||G72426 conserved hypothetical protein - Thermotoga maritima... 211 7e-54
pir||D83101 conserved hypothetical protein PA4348 [imported] - P... 183 2e-45
emb|CAA59460.1| (X85171) CDP-abequose synthase [Thermotoga marit... 146 3e-34
sp|Q58142|Y732_METJA HYPOTHETICAL PROTEIN MJ0732 >gi|2127902|pir... 87 2e-16
pir||B71103 probable flavoprotein - Pyrococcus horikoshii >gi|32... 73 5e-12
>pir||A75028 cdp-abequose synthase (EC 4.2.1.-) PAB1188 - Pyrococcus abyssi
(strain Orsay) >gi|5459177|emb|CAB50663.1| (AJ248288)
CDP-ABEQUOSE SYNTHASE (EC 4.2.1.-) [Pyrococcus abyssi]
Length = 259
Score = 547 bits (1394), Expect = e-155
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MVRDVGEYFLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDP 60
MVRDVGEYFLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDP
Sbjct: 1 MVRDVGEYFLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDP 60
Query: 61 GGYKIFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLP 120
GGYKIFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLP
Sbjct: 61 GGYKIFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLP 120
Query: 121 HFGFESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIA 180
HFGFESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIA
Sbjct: 121 HFGFESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIA 180
Query: 181 FPDERYMVVEDIEKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRF 240
FPDERYMVVEDIEKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRF
Sbjct: 181 FPDERYMVVEDIEKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRF 240
Query: 241 VPRFLDWLENLQVGVDLMR 259
VPRFLDWLENLQVGVDLMR
Sbjct: 241 VPRFLDWLENLQVGVDLMR 259
>pir||C71213 hypothetical protein PH1971 - Pyrococcus horikoshii
>gi|3258415|dbj|BAA31098.1| (AP000007) 258aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 258
Score = 505 bits (1286), Expect = e-142
Identities = 229/258 (88%), Positives = 252/258 (96%)
Query: 2 VRDVGEYFLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDPG 61
++ VGEYFLDP++DPG+DH+LYKD++H+V+YLGTQEGLEDVDVNSYLIVS GKGILIDPG
Sbjct: 1 MKKVGEYFLDPNLDPGRDHILYKDDEHMVIYLGTQEGLEDVDVNSYLIVSKGKGILIDPG 60
Query: 62 GYKIFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLPH 121
GYKIF KVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWRE+SNAKI++HWLWVRFLPH
Sbjct: 61 GYKIFTKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREISNAKIIIHWLWVRFLPH 120
Query: 122 FGFESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAF 181
FGFE++RGYAHEL DEGET+NFG TTLEFIPAHFLHSPGHFT+YDRRSKFLFSGDIGIAF
Sbjct: 121 FGFENIRGYAHELQDEGETLNFGATTLEFIPAHFLHSPGHFTVYDRRSKFLFSGDIGIAF 180
Query: 182 PDERYMVVEDIEKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRFV 241
PDERY+VVE++E+HIQYMRPLHERLMASNKALRLWVNKVR LDIEAILPQHGAIIP+RFV
Sbjct: 181 PDERYLVVENMERHIQYMRPLHERLMASNKALRLWVNKVRGLDIEAILPQHGAIIPRRFV 240
Query: 242 PRFLDWLENLQVGVDLMR 259
PRFLDWLENL+VGVDLMR
Sbjct: 241 PRFLDWLENLKVGVDLMR 258
>pir||T44677 conserved hypothetical protein [imported] - Desulfurococcus sp.
(strain SY) >gi|2104729|gb|AAB64419.1| (U96487) ORF1
[Desulfurococcus sp. SY]
Length = 255
Score = 446 bits (1134), Expect = e-124
Identities = 200/255 (78%), Positives = 233/255 (90%)
Query: 5 VGEYFLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDPGGYK 64
+GEYF++P +DP KDHVLY+D++HLVVYLGTQEG EDVDVNSYLIVS GKG+LIDPGGYK
Sbjct: 1 MGEYFIEPGLDPRKDHVLYRDDEHLVVYLGTQEGGEDVDVNSYLIVSRGKGVLIDPGGYK 60
Query: 65 IFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLPHFGF 124
IF KVLAN+SKYIDP+DIEYIY+CHQDPDVAGS+PLWREVSNAKI+VHWLW RFLPHFGF
Sbjct: 61 IFSKVLANISKYIDPRDIEYIYICHQDPDVAGSLPLWREVSNAKIIVHWLWTRFLPHFGF 120
Query: 125 ESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAFPDE 184
E + HELPDEGET+ FG TTLEFIPAHFLHSPGHFTIYD RSKFLF+GDIGIA DE
Sbjct: 121 EDAKAVTHELPDEGETMPFGATTLEFIPAHFLHSPGHFTIYDHRSKFLFTGDIGIALLDE 180
Query: 185 RYMVVEDIEKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRFVPRF 244
Y+VVE++E+HIQ MRP+HERLMASN+A++ W+++V++LD+EAILPQHGAIIPKRF+PRF
Sbjct: 181 PYIVVENMERHIQAMRPVHERLMASNRAIKAWLDRVKFLDVEAILPQHGAIIPKRFIPRF 240
Query: 245 LDWLENLQVGVDLMR 259
D+LENL+ GVDL R
Sbjct: 241 YDFLENLKCGVDLYR 255
>pir||G70385 conserved hypothetical protein aq_990 - Aquifex aeolicus
>gi|2983503|gb|AAC07081.1| (AE000717) hypothetical
protein [Aquifex aeolicus]
Length = 251
Score = 243 bits (614), Expect = 2e-63
Identities = 119/243 (48%), Positives = 161/243 (65%), Gaps = 5/243 (2%)
Query: 19 DHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDPGGYKIFPKVLANVSKYID 78
+ +LY EDH VV V+ N YLI+ G+GIL+DPGG+K+F K+ +++SKY+
Sbjct: 3 EQILYDTEDHKVVLFEELTPASAVEANQYLIIHKGEGILLDPGGHKVFAKLKSDISKYLP 62
Query: 79 PKDIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLPHFGFESVRGYAHELP--D 136
P+ I+YI++ HQDPD+ I W +NA+ L+ LW RFLPHFG ES R +P D
Sbjct: 63 PQQIKYIFLSHQDPDIVAGINGWLLTTNAEALIPKLWYRFLPHFGLES-RYEERVIPIDD 121
Query: 137 EGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAFPDERYMVVEDIEKHI 196
+G +N L +PAHF+HSPG+F +YD SK LFSGD+G + ++ Y +VE+ E+H+
Sbjct: 122 KGTRVNLNGCELLVLPAHFMHSPGNFQLYDPCSKILFSGDLGASL-NQPYTIVENFEEHV 180
Query: 197 QYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIP-KRFVPRFLDWLENLQVGV 255
+YM H R MASNK LR W N VR LDIE I PQHGAI K V +F++W+ENL+ GV
Sbjct: 181 KYMEGFHRRYMASNKVLRFWANMVRQLDIEIIAPQHGAIFKGKDMVNKFIEWVENLECGV 240
Query: 256 DLM 258
DLM
Sbjct: 241 DLM 243
>pir||G72426 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980497|gb|AAD35107.1|AE001690_1 (AE001690)
conserved hypothetical protein [Thermotoga maritima]
Length = 253
Score = 211 bits (532), Expect = 7e-54
Identities = 108/246 (43%), Positives = 153/246 (61%), Gaps = 6/246 (2%)
Query: 18 KDHVLYKDEDHLVVYLGTQEGLED-VDVNSYLIVSGGKGILIDPGGYKIFPKVLANVSKY 76
++ +L+ + H ++LG +E E+ V N YLI+ G +GIL+DPGG +FP+V++NV++
Sbjct: 3 ENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEV 62
Query: 77 IDPKDIEYIYMCHQDPDVAGSIPLWREV-SNAKILVHWLWVRFLPHFGFESVRGYAHELP 135
+D I +I+ HQDPDV I LW + NAKI + LWVRFLPHFG + +
Sbjct: 63 VDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIV-PIS 121
Query: 136 DEGETINF-GVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAFPDE--RYMVVEDI 192
D+G I LE +PAHFLHS G+F +YD +K LFSGDIG A ++ RY V+D
Sbjct: 122 DKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDF 181
Query: 193 EKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHGAIIPKRFVPRFLDWLENLQ 252
E+H+ M H+R M+SN A + WV+ V I+ I PQHGA+ V +FL+W NL+
Sbjct: 182 ERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLK 241
Query: 253 VGVDLM 258
GVDL+
Sbjct: 242 CGVDLI 247
>pir||D83101 conserved hypothetical protein PA4348 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950575|gb|AAG07736.1|AE004851_4 (AE004851)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 261
Score = 183 bits (459), Expect = 2e-45
Identities = 97/247 (39%), Positives = 138/247 (55%), Gaps = 10/247 (4%)
Query: 21 VLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDPGGYKIFPKVLANVSKYIDPK 80
VL+ + H + E V N +LIV G+ +L+DPGG + + +SK +
Sbjct: 7 VLFDNGSHQCLCFDDLVSGEGVQSNQFLIVDNGQYLLLDPGGDLTYTPLSLELSKRFPLQ 66
Query: 81 DIEYIYMCHQDPDVAGSIPLWREVSNAKILVHWLWVRFLPHFG------FESVRGY--AH 132
+++YI+ HQDPD+ ++ W + A+++ LW RFLPH + Y
Sbjct: 67 ELDYIFASHQDPDIIAALDKWLLHTRARVICSKLWARFLPHLTANYLAVSHGINTYDRVM 126
Query: 133 ELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAFPDERYMVVEDI 192
LPD G+ I G +L+ IPAHFLHS G+F +YD SK LFSGD+G + D+ V D
Sbjct: 127 PLPDRGQAIALGDCSLKAIPAHFLHSVGNFQLYDPVSKILFSGDMGASLVDDA-APVSDF 185
Query: 193 EKHIQYMRPLHERLMASNKALRLWVNKVRYLDIEAILPQHG-AIIPKRFVPRFLDWLENL 251
HIQYM H R MA+NK RLW VR +D+E I+PQHG + K + FL W+ENL
Sbjct: 186 AAHIQYMDGFHRRYMAANKICRLWARMVRDMDVEMIVPQHGRPFVGKEMISAFLYWIENL 245
Query: 252 QVGVDLM 258
+ G+DL+
Sbjct: 246 ECGIDLL 252
>emb|CAA59460.1| (X85171) CDP-abequose synthase [Thermotoga maritima]
Length = 177
Score = 146 bits (365), Expect = 3e-34
Identities = 78/172 (45%), Positives = 102/172 (58%), Gaps = 5/172 (2%)
Query: 91 DPDVAGSIPLWREV-SNAKILVHWLWVRFLPHFGFESVRGYAHELPDEGETINF-GVTTL 148
DPDV I LW + NAKI + LWVRFLPHFG + + D+G I L
Sbjct: 1 DPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIV-PISDKGTKIKLLSGNEL 59
Query: 149 EFIPAHFLHSPGHFTIYDRRSKFLFSGDIGIAFPDE--RYMVVEDIEKHIQYMRPLHERL 206
E +PAHFLHS G+F +YD +K LFSGDIG A ++ RY V+D E+H+ M H+R
Sbjct: 60 EILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRY 119
Query: 207 MASNKALRLWVNKVRYLDIEAILPQHGAIIPKRFVPRFLDWLENLQVGVDLM 258
M+SN A + WV+ V I+ I PQHGA+ V +FL+W NL+ VDL+
Sbjct: 120 MSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCSVDLI 171
>sp|Q58142|Y732_METJA HYPOTHETICAL PROTEIN MJ0732 >gi|2127902|pir||D64391 flavoprotein -
Methanococcus jannaschii >gi|1591446|gb|AAB98728.1|
(U67519) flavoprotein (fprA) [Methanococcus jannaschii]
Length = 393
Score = 87.0 bits (212), Expect = 2e-16
Identities = 67/214 (31%), Positives = 104/214 (48%), Gaps = 14/214 (6%)
Query: 45 NSYLIVSGGKGILIDPGGYKIFPKVLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREV 104
NSYLI K +LID +F +++ +SK+IDPKD++YI + H + D +G + E+
Sbjct: 37 NSYLI-KDKKNVLIDTAKDYMFNELIYGISKFIDPKDLDYIIVNHVEKDHSGCVDKLVEI 95
Query: 105 SNAKILVHWLWVRFLPHFGFESVRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTI 164
SNA I+ + L + + + + D G+ IN G TL+FI LH P +
Sbjct: 96 SNATIITNEKGKEHLSL--YYDTKDWDFIIVDTGDEINIGDRTLKFIRTPMLHWPDNMLT 153
Query: 165 YDRRSKFLFSGDI---GIAFPDE-RYMVVEDIEKHIQ-YMRPLHERLMASNKALRLWVNK 219
Y + K LFS D IA + Y + E I +H + Y + LM + +
Sbjct: 154 YCKEEKILFSNDAFGQHIASSERFDYEIGEGIFEHAKDYFANI---LMPYKMLIPDAIKA 210
Query: 220 VRYLDIEAILPQHGAIIPK---RFVPRFLDWLEN 250
V+ LDIE I P HG I + + ++ +W N
Sbjct: 211 VKNLDIELICPSHGVIWKEYINEIIEKYNEWAMN 244
>pir||B71103 probable flavoprotein - Pyrococcus horikoshii
>gi|3257501|dbj|BAA30184.1| (AP000004) 411aa long
hypothetical flavoprotein [Pyrococcus horikoshii]
Length = 411
Score = 72.6 bits (175), Expect = 5e-12
Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 12/257 (4%)
Query: 9 FLDPSMDPGKDHVLYKDEDHLVVYLGTQEGLEDVDVNSYLIVSGGKGILIDPGGYKIFPK 68
+++ +D + ++L D+ + + E + N+YL+ G +L D + K
Sbjct: 7 WVEKLLDEPELYILRLDDSEIKHFEAAWSIPEGITYNAYLMKVGDAVVLFDTWKGEYTEK 66
Query: 69 VLANVSKYIDPKDIEYIYMCHQDPDVAGSIPLWREVS--NAKILVHWLWVRFLPHFGFES 126
L ++S +DPK+I +I + H +PD +G++P E++ AK++ L F +
Sbjct: 67 FLESLSTLVDPKEITHIIVHHTEPDHSGALPKLLELNEYRAKLIGTTFAKNLLQGFYGDK 126
Query: 127 VRGYAHELPDEGETINFGVTTLEFIPAHFLHSPGHFTIYDRRSKFLFSGDI--GIAFPDE 184
V H + D GE + G T FI +LH P YD K +FS D G P+
Sbjct: 127 VVENFHTIKD-GEEVKIGNRTFRFITVPWLHWPDTMITYDVEDKLIFSCDAGGGYGIPEA 185
Query: 185 RYMVVED-IEKHIQYMRPLHERLMAS-NKALRLWVNKVRYLDI----EAILPQHGAIIPK 238
ED ++K++ Y+ ++ +K + + K++ L I ILP HG +I +
Sbjct: 186 IDDSDEDVVKKYLPYVTKYIVTVIGHYHKYIVQNIKKLKELGIIENANMILPGHG-LIWR 244
Query: 239 RFVPRFLDWLENLQVGV 255
+ R + E + G+
Sbjct: 245 KSPTRIFEHYERVGAGI 261
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.146 0.458
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108333841
Number of Sequences: 2977
Number of extensions: 4790089
Number of successful extensions: 8485
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8464
Number of HSP's gapped (non-prelim): 9
length of query: 259
length of database: 189,106,746
effective HSP length: 48
effective length of query: 211
effective length of database: 160,379,370
effective search space: 33840047070
effective search space used: 33840047070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)