BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1193 (PAB1193) DE:Hypothetical protein
(931 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75027 hypothetical protein PAB1193 - Pyrococcus abyssi (st... 1938 0.0
pir||B72537 hypothetical protein APE1583 - Aeropyrum pernix (str... 313 7e-84
pir||B71212 hypothetical protein PH1962 - Pyrococcus horikoshii ... 258 2e-67
gb|AAK41510.1| Conserved hypothetical protein [Sulfolobus solfat... 154 5e-36
pir||H75141 oligopeptide-binding protein appa precursor PAB0627 ... 85 4e-15
pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii ... 71 6e-11
gb|AAD28552.1|AF113969_1 (AF113969) pullulanase [Thermococcus hy... 70 1e-10
>pir||B75027 hypothetical protein PAB1193 - Pyrococcus abyssi (strain Orsay)
>gi|5459170|emb|CAB50656.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 931
Score = 1938 bits (4964), Expect = 0.0
Identities = 931/931 (100%), Positives = 931/931 (100%)
Query: 1 MKRRLGFVLALLAVVGLLVTPLTLPVYAAEQGKPVETIYLTIRTNEEAAISDVAKGGANG 60
MKRRLGFVLALLAVVGLLVTPLTLPVYAAEQGKPVETIYLTIRTNEEAAISDVAKGGANG
Sbjct: 1 MKRRLGFVLALLAVVGLLVTPLTLPVYAAEQGKPVETIYLTIRTNEEAAISDVAKGGANG 60
Query: 61 GLDVFLYPISGKEFKNLPKDILDKLRLIRSVGGEVAIQINPVHDDDNPYTVTVGDKVYFN 120
GLDVFLYPISGKEFKNLPKDILDKLRLIRSVGGEVAIQINPVHDDDNPYTVTVGDKVYFN
Sbjct: 61 GLDVFLYPISGKEFKNLPKDILDKLRLIRSVGGEVAIQINPVHDDDNPYTVTVGDKVYFN 120
Query: 121 PFAIKEVRFALNYLINRQYIVSNIFGGSAQPMYGCVRPSTGAGIYFEPVYKALGFTPTGD 180
PFAIKEVRFALNYLINRQYIVSNIFGGSAQPMYGCVRPSTGAGIYFEPVYKALGFTPTGD
Sbjct: 121 PFAIKEVRFALNYLINRQYIVSNIFGGSAQPMYGCVRPSTGAGIYFEPVYKALGFTPTGD 180
Query: 181 LAKAQQMVEEAMKKAAEELKKEGHKLELKTGEDGKKWWYFDGEPVTVKFVIRVEDERKDI 240
LAKAQQMVEEAMKKAAEELKKEGHKLELKTGEDGKKWWYFDGEPVTVKFVIRVEDERKDI
Sbjct: 181 LAKAQQMVEEAMKKAAEELKKEGHKLELKTGEDGKKWWYFDGEPVTVKFVIRVEDERKDI 240
Query: 241 GLYVADLIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFEWQLYTAGWIITSNVKWPDWQT 300
GLYVADLIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFEWQLYTAGWIITSNVKWPDWQT
Sbjct: 241 GLYVADLIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFEWQLYTAGWIITSNVKWPDWQT 300
Query: 301 AAFYSTIWGKQPAAVGWSYTPETTVKDLVDYFGGPEKLIDALGLKYYNTPEKLKELYDMN 360
AAFYSTIWGKQPAAVGWSYTPETTVKDLVDYFGGPEKLIDALGLKYYNTPEKLKELYDMN
Sbjct: 301 AAFYSTIWGKQPAAVGWSYTPETTVKDLVDYFGGPEKLIDALGLKYYNTPEKLKELYDMN 360
Query: 361 IDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKISMAQGIMDGLVVFIAEQWEYFAVN 420
IDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKISMAQGIMDGLVVFIAEQWEYFAVN
Sbjct: 361 IDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKISMAQGIMDGLVVFIAEQWEYFAVN 420
Query: 421 KERVTRIAADVSAGLYSWWMWRGLETVDGVAYVAEFSQGGSIYTNAMNPIGGGGDIYGNM 480
KERVTRIAADVSAGLYSWWMWRGLETVDGVAYVAEFSQGGSIYTNAMNPIGGGGDIYGNM
Sbjct: 421 KERVTRIAADVSAGLYSWWMWRGLETVDGVAYVAEFSQGGSIYTNAMNPIGGGGDIYGNM 480
Query: 481 VMRAISDPATYVNPATGDVMPGRCTFKVERGPFTIPKNAIVYNSTLKKWVPQHAGEKAKV 540
VMRAISDPATYVNPATGDVMPGRCTFKVERGPFTIPKNAIVYNSTLKKWVPQHAGEKAKV
Sbjct: 481 VMRAISDPATYVNPATGDVMPGRCTFKVERGPFTIPKNAIVYNSTLKKWVPQHAGEKAKV 540
Query: 541 RVTYTCKFGKWHDGTPMTMEDIKAAIAFSYEWSYKDGDNDPYYDEAMGASTRTLEQTLGF 600
RVTYTCKFGKWHDGTPMTMEDIKAAIAFSYEWSYKDGDNDPYYDEAMGASTRTLEQTLGF
Sbjct: 541 RVTYTCKFGKWHDGTPMTMEDIKAAIAFSYEWSYKDGDNDPYYDEAMGASTRTLEQTLGF 600
Query: 601 VFVNPTTYIVYSNITHPVADDQIAGNNAWWATVPWYLRHAMEELVANPQKYGVTNNYTFT 660
VFVNPTTYIVYSNITHPVADDQIAGNNAWWATVPWYLRHAMEELVANPQKYGVTNNYTFT
Sbjct: 601 VFVNPTTYIVYSNITHPVADDQIAGNNAWWATVPWYLRHAMEELVANPQKYGVTNNYTFT 660
Query: 661 QAEGPRWLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQGEITPDEAVKAYKSLLDFINKHG 720
QAEGPRWLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQGEITPDEAVKAYKSLLDFINKHG
Sbjct: 661 QAEGPRWLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQGEITPDEAVKAYKSLLDFINKHG 720
Query: 721 HAYDSNGPFYLDKYDPDKMLMVFKRFSGNPIPPDYWKKTLLIARLVPKGAEVPARVMAGK 780
HAYDSNGPFYLDKYDPDKMLMVFKRFSGNPIPPDYWKKTLLIARLVPKGAEVPARVMAGK
Sbjct: 721 HAYDSNGPFYLDKYDPDKMLMVFKRFSGNPIPPDYWKKTLLIARLVPKGAEVPARVMAGK 780
Query: 781 PLTVKVMLTLKEEFPDWGEKPADRGYVTVSIVDANGNEVYSGEAKLTTAGTFELNVPGDE 840
PLTVKVMLTLKEEFPDWGEKPADRGYVTVSIVDANGNEVYSGEAKLTTAGTFELNVPGDE
Sbjct: 781 PLTVKVMLTLKEEFPDWGEKPADRGYVTVSIVDANGNEVYSGEAKLTTAGTFELNVPGDE 840
Query: 841 TKGWSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTS 900
TKGWSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTS
Sbjct: 841 TKGWSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTS 900
Query: 901 PTETTTKGGICGPAILVGLAVLPLLLRRRDN 931
PTETTTKGGICGPAILVGLAVLPLLLRRRDN
Sbjct: 901 PTETTTKGGICGPAILVGLAVLPLLLRRRDN 931
>pir||B72537 hypothetical protein APE1583 - Aeropyrum pernix (strain K1)
>gi|5105270|dbj|BAA80583.1| (AP000062) 930aa long
hypothetical protein [Aeropyrum pernix]
Length = 930
Score = 313 bits (793), Expect = 7e-84
Identities = 280/1018 (27%), Positives = 427/1018 (41%), Gaps = 211/1018 (20%)
Query: 1 MKRRLGFVLALLAVVGLLVTPLTLPVY---AAEQGKPVETIYLTIRTNEEAAISDVAKGG 57
M+ L +L ++ + + P ++P+ +A+ G+PVETI T+ A I +V G
Sbjct: 16 MRTSLARILIAAVMIAIFILP-SIPLVTLASAQAGQPVETITFKTVTDMTADIVEVGSGN 74
Query: 58 ANGGLDVFLYPISGKEFKNLPKDILDKLRLIRSVG-------------------GEVAIQ 98
A D+FL+ K + ++P+D++ + LI S GE+ ++
Sbjct: 75 A----DIFLWSQPLKNYLDIPQDVMANIDLIPSSSTFTALAINLASNIYDSTKQGEIVVK 130
Query: 99 INPVHDDDNPYTVTVGDKVY-------------------------FNPFAIKEVRFALNY 133
+N D + V + VY FNPF +K++R AL
Sbjct: 131 VNGPGDYETIQGVQIPGLVYKNSLDAFGSNWVDITQVDPNDRNIEFNPFGVKKIRQALQL 190
Query: 134 LINRQYIVSNIFGGSAQPMYGCVRPSTGAGIYFEPVYKALGFTPTGDLAKAQQMVEEAMK 193
+++R ++V+ I+ GSA PM +R A + + + LG T D+A AQQ++EEA+
Sbjct: 191 IVDRSFLVNGIYQGSANPMLTAIRSGHPAYEWVADIPEELGVTSVADVATAQQLMEEAIN 250
Query: 194 KAAEELKKEGHKLELKTGE--DGKKWWYF---DGE--PVTVKFVIRVEDERKDIGLYVAD 246
+ + + G++L K G KW YF DG PV V F+IRVEDER D G +A+
Sbjct: 251 ELNQIYAEYGYQLVFKDDPLAPGGKWLYFVYPDGTEVPVEVNFLIRVEDERLDSGRQIAN 310
Query: 247 LIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFE-------WQLYTAGWIITSN--VKWPD 297
IE YL KV ++ P VY +P W LYT GW+ ++ + W
Sbjct: 311 WIESYLWIKVNRIERTRTIVTPLVYGINPIQTSDTIGGRLWHLYTEGWVSVTDDPIYWAR 370
Query: 298 WQTAAFYSTIWGKQPAAVGWSYTPETTVKDLVDYFGGPEKLIDALGLKYYNTPEKLKELY 357
+ A FY+ + G Y P V+D +F PE LG K Y
Sbjct: 371 YDVAFFYAPLRG---------YGPNHRVQDWWFWFN-PEMY--ELGYKLY---------- 408
Query: 358 DMNIDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKISMAQGIMDGLVVFIAEQWEYF 417
F N T VDQ + + G+ + VF+ E E+F
Sbjct: 409 -----------------FGNYT----PDQVDQLREDIRTLTRLGLEEVPRVFLTENLEFF 447
Query: 418 AVNKERVTRIAADVSAGLYSWWMWRGLETVDGVAYVAEFSQGGSIYTNAMNPIGGGGDIY 477
+NK RVT + + GL+S W R TVDG V EFS G+++ + NP+ G DIY
Sbjct: 448 PINKNRVTGLIFGTTTGLWSMWGIRTSRTVDGNLTVIEFSAAGALFLSPWNPVLGFTDIY 507
Query: 478 GNMVMRAISDPATYVNPATGDVMPGRCTFKVERGP--FTIPKNAIVYNSTLKKWVPQ--- 532
++ ++D Y +P TG +P R ++ VE P +P +A+VY+ KW+
Sbjct: 508 SEVIRYQVADFGMYAHPVTGIPVPIRESWNVEVNPDGIPVPDDAMVYDPVENKWITVGEA 567
Query: 533 ---------------HAGEKAKVRVTYTCKFGKWHDGTPMTMEDIKAAIAFSYEWSYKD- 576
G +A +VT+ GKWHDGT MT+ DI +AF YEW++ D
Sbjct: 568 KAQGKDYIPGVGSVVSEGAQASAKVTFDFVLGKWHDGTDMTLADILGVLAFYYEWAFDDS 627
Query: 577 ---GDNDPYYD-EAMGASTRTLEQTLGFVFVNPTTYIVYSNITHPVADDQIAGNNAWWAT 632
G DPYYD E GA T TLE G V+ T VY+ V IA W
Sbjct: 628 QITGQPDPYYDSEIDGAVTGTLELIYGIKIVDEDTIEVYTPYLD-VDPALIASTIDMWVW 686
Query: 633 VPWYLRHAMEELVANPQKYGVTNNYTFTQAEGPRWLDLLVKDHVEDLKKVIEKLIEEKDV 692
P ++ A+E+ V G +T +A G +DLL H + + ++ +L+ + +
Sbjct: 687 TPLHMIIALEKAVVEDPG-GTNYGWTDREATGEIAVDLL--KHPDVIAQMASELVGQPEA 743
Query: 693 PWYLQG-----EITPDEAVKAYKSLLDFINKHGHAYDSNGPFYLDKYDPDKMLMVFKRFS 747
Y+ G + D ++AY ++FIN+ GHA NGPF ++ YDP+ +M F
Sbjct: 744 LKYVNGLNLLSQSDMDARLQAY---VNFINEKGHAVVFNGPFMVESYDPNANVMELVFFE 800
Query: 748 GNPIPPDYWKKTLLIARLVPKGAEVPARVMAGKPLTVKVMLTLKEEFPDWGEKPADRGYV 807
P+ +G++
Sbjct: 801 DYPL---------------------------------------------------GKGFI 809
Query: 808 TVSIVDANGNEVYSGEAKLTTAGTFELNVPGDETKGWSTGKYTAIIRGGLSKEVTSFTIK 867
+++ N VY GT E P T+ T T ++ + T
Sbjct: 810 PPQLLEVTRNNVY---------GTIETAPPTTTTETTPTETTTTETTTTETETTPTETTP 860
Query: 868 KTFVVIKPT---TTSPQQTTTSTPQQTSSPTATGTSPTETTTKGGICGPAILVGLAVL 922
VVI T T + QT T T Q + T T T+ T TT A ++ L +L
Sbjct: 861 AQTVVITKTVEKTVTQVQTETVTKTQVETQTETVTATTTVTTGVSTTVLAAIIILIIL 918
>pir||B71212 hypothetical protein PH1962 - Pyrococcus horikoshii
>gi|3258406|dbj|BAA31089.1| (AP000007) 841aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 841
Score = 258 bits (653), Expect = 2e-67
Identities = 163/421 (38%), Positives = 229/421 (53%), Gaps = 32/421 (7%)
Query: 45 NEEAAISDVAKGGANGGLDVFLYPISGKEFKNLPKDILDKLRLIRSVGGEVAIQINPVHD 104
NE I VAKG D+ Y +F L ++ + + + ++GG + NPVHD
Sbjct: 371 NENTIILGVAKGD----YDLSWYSFPSFKFSGLSEEDRNNIDMYVNIGGFWDMVWNPVHD 426
Query: 105 DDNPYTVTVGDKVYFNPFAIKEVRFALNYLINRQYIVSNIFGGSAQPMYGCVRPSTGAGI 164
DNPY VTVGDK YFNPFAI+E+RFAL YLINR YIV NI GS PM+ I
Sbjct: 427 KDNPYLVTVGDKKYFNPFAIREIRFALEYLINRNYIVQNILQGSGGPMFTPWTSGDKLAI 486
Query: 165 -YFEPVYKALGFTPTGDLAKAQQMVEEAMKKAAEELKKEGHKLELKTGEDGKKWWYFDGE 223
+PV A G GD A +++++AM+KAA +L K G+KLE G+ YF+G+
Sbjct: 487 KKLQPVLDAYGLDAQGDEEYALKLIDDAMRKAARDLAKMGYKLEKVNGKG-----YFNGQ 541
Query: 224 PVTVKFVIRVEDERKDIGLYVADLIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFEWQLY 283
PV + + R EDERKD Y+A++++K F V+ + + + A VY DP N+EW Y
Sbjct: 542 PVKLVGIGRQEDERKDEAYYIANILKK-AGFDVQVKIVDRRTASKMVYLSDPANYEWNYY 600
Query: 284 TAGWIITSNVKWPDWQTAAFYSTIWGKQPAAVGWSYTPE----TTVKDLVDYF--GGPEK 337
T GW+ +VK+ + +Y+T W P VGW +TP+ TV++++ Y G +
Sbjct: 601 TEGWVAGGSVKFSISRILQYYTTAW-FGPGFVGWKFTPQNTYRATVEEVLKYLGEGDIQS 659
Query: 338 LIDALGLKYYNTPEKLKELYDMNIDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKIS 397
ID L L+YY +P+KLK + + D + +I + + N+T E +YWDL KI
Sbjct: 660 AIDMLELEYYTSPDKLKPILNWTADDVGWLIY--TSHYKNQTLDSEA----KYWDLTKIG 713
Query: 398 MAQGIMDGLVVFIAEQWEYFAVNKERVTRIAADVSAGLYSWWMWRGLETVDGVAYVAEFS 457
A GI + VF AE WE+F VNK R+ D + GL G V AY+AE
Sbjct: 714 AALGIYESFRVFTAENWEFFPVNK-RIKFRVMDPAVGL-------GNSIVMKSAYLAEAP 765
Query: 458 Q 458
Q
Sbjct: 766 Q 766
Score = 161 bits (404), Expect = 3e-38
Identities = 95/311 (30%), Positives = 157/311 (49%), Gaps = 14/311 (4%)
Query: 450 VAYVAEFSQGGSIYTNAMNPIGGG-GDIYGNMVMRAISDPATYVNPATGDVMPGRCTFKV 508
V +A +S GS++ NP G D+Y D + V GD P RCT
Sbjct: 32 VLKIAMYSATGSLFMGVWNPSAAGFRDVYSTRAASLAQDEGSSVWGIDGDYHPYRCTIVE 91
Query: 509 ERGPFTIPKNAIVYNSTLKKWVPQHAGEKAKVRVTYTCKFGKWHDGTPMTMEDIKAAIAF 568
+ IP +A+++NST KKW +AG+ A V VT+ C+ +HDG +T+ D+ + +
Sbjct: 92 AKENVKIPSDAVIFNSTSKKWEAAYAGQTAPVAVTFKCQKIYFHDGHKLTVADVIYSYYW 151
Query: 569 SYEWSYKDGDNDPYYDE-AMGASTRTLEQTLGFVFVNPTTYIVYSNITHPVADDQIAGNN 627
+EW+ +DGDNDPYYD+ + T+ + LG V+ I H
Sbjct: 152 EWEWTSQDGDNDPYYDQNEADWNAETMAKLLGIKVVSEDDDHFVITIYHKYTFPPYKWYE 211
Query: 628 AWWAT----VPWYLRHAMEELVANPQKYGVTNN------YTFTQA-EGPRWLDLLVKDHV 676
W+ T PW L +AM E+VA K + N ++F+++ E + +D+L H
Sbjct: 212 YWYFTPYTSYPWQLIYAMSEVVAESNKARLANQTQGKQLFSFSESTEDIQQIDMLTPAHA 271
Query: 677 EDLKKVIEKLIEEKDVPWYLQGEI-TPDEAVKAYKSLLDFINKHGHAYDSNGPFYLDKYD 735
+ + + +EKL +EK +P L+ I + +K Y +++FI +H H + SNGP+ +D Y
Sbjct: 272 KVVMEELEKLKKEKPIPDVLKQFIYNEQDEIKEYDDIINFIKQHNHMFISNGPYIIDVYK 331
Query: 736 PDKMLMVFKRF 746
P+ + + + +F
Sbjct: 332 PENLYLKYIKF 342
Score = 71.0 bits (171), Expect = 6e-11
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Query: 868 KTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTSPTETTTKGGICGPAILVGLAVLPLLLR 927
KT + TT+SP T T++P QT T T TSP++T T GGICGPA++VGLA +PL+LR
Sbjct: 782 KTETQTQTTTSSPSPTQTTSPSQT---TTTTTSPSQTKTGGGICGPALIVGLAAIPLILR 838
Query: 928 RR 929
RR
Sbjct: 839 RR 840
>gb|AAK41510.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 906
Score = 154 bits (385), Expect = 5e-36
Identities = 215/940 (22%), Positives = 370/940 (38%), Gaps = 137/940 (14%)
Query: 8 VLALLAVVGLLVTPLTLPVYAAEQGKPVETIYLTIRTNEEAAISDVAKGGANGGLDVFLY 67
+++LL +V ++P+ + + P T I N A +A +G + + Y
Sbjct: 12 IISLLILVATAISPI-FAIAQSASSSPASTAITIISYNGNDANGILAF--EHGQIAFYAY 68
Query: 68 PISGKEFKNLPKDILDKLRLIRSVGGEVAIQINPVHDDDNPYTVTVGDKVYFNPFAIKEV 127
+ E+ +LP K L+ + ++ + NP T G FNPF +EV
Sbjct: 69 AVPPSEYTSLPPGA--KAYLLPNTYYDILV---------NPLNTTFG----FNPFQFQEV 113
Query: 128 RFALNYLINRQYIVSNIFGGSAQPMYGCVRPSTGAGIYFEPVYKALGFTPTGDLAKAQQM 187
RFALNY++NR Y V +I G YG S AG EP L T L+K
Sbjct: 114 RFALNYIVNRTYFVDSILHG-----YGIPTISLYAG---EPDVIHLQQT----LSKYAN- 160
Query: 188 VEEAMKKAAEELKK--EGHKLELKTGEDGKKWWYFDGEPVTVKFVIRVEDE-RKDIGLYV 244
V A E + K H + G+ WY++G+P+TV +R + R++ Y
Sbjct: 161 VHYNFTYANETIYKVLTAHGAKYINGQ-----WYYNGKPITVYVFVRTDATVRREYAQYF 215
Query: 245 ADLIEKYLHFKVEKLLWNAQKAIPAVYYKDPKNFEWQLYTAGWIITSNVKWPDWQTAAFY 304
++K L F V+++ N QK I VY DP N W + W T + Y
Sbjct: 216 ITQLQK-LGFTVQQIQGNLQKEISVVYGSDPANTTWNILIEAWGGTYGY-YDSSLAVGLY 273
Query: 305 STIWGKQPAAVGWSYTPETTVKDLVDYFGGPEKLIDALGLKYYNTPEK-----LKELYDM 359
ST+ P + Y+G L + YN LKE ++
Sbjct: 274 STLGASDPFS---------------SYYG--------LSMGTYNDTRYESSLLLKEANEL 310
Query: 360 NIDPIVEMINYGETTFNNKTYVLEEGNVDQYWDLQKISMAQGIMDGLVVFIAEQWEYFAV 419
D + +I + T + Y + Y + ++ + + GL + + + +
Sbjct: 311 --DNLSLIIAQSQFTSAQEYYQI-------YNKIVELGINMSVRIGLGMSLTPIYALSNI 361
Query: 420 NKERVTRIAADVSAGLYSWWMWRGL--ETVDGVAYVAEFSQGGSIYTNAMNPIGGGGDIY 477
N + + + + + + G GV Y+ SQG + NP G D Y
Sbjct: 362 NGVYPSFAQSTLLSFQTYYSITNGSYPNVTIGVRYL---SQGSA------NPGAGFTDSY 412
Query: 478 GNMVMRAISDPATYVNPATGDVMPGRCTFKV----ERGPFTIPKNAIVYNSTLKKWVPQH 533
+ + A+ P++ P +G +P T+K+ ++P NA+ +N T ++
Sbjct: 413 TDEIGNALFTPSSLTVPGSGYPVPFIYTYKIVNITPHAVVSVPSNALWWNPTTQQITKVS 472
Query: 534 AGEKAKVRVTYTC----KFGKWHDGTPMTMEDIKAAIAFSYEWSYKDGDNDPYYDEAMGA 589
A++ V Y KW DG +T+ DI + E S ++P YD +
Sbjct: 473 PNTTAQMAVIYNLAPLFNNDKWADGQNITLADIIYEYIVASEMSLNS--SNPIYDSTASS 530
Query: 590 STRTLEQTL-GFVFVNPTTYIVYSNI-----THPVADDQIAGNNAWWATV-----PWYLR 638
QT+ GF +N + ++ N T V + N +A PW +
Sbjct: 531 VYAPALQTIKGFKIINSSAIEIWGNDWFFDPTEAVVSLFGSFNPLGYALAGGGYFPWQMY 590
Query: 639 HAMEELVANPQKYGVTNNYTFTQAEGPRWLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQ- 697
M+++VA + + Q++G WL+L+ + + ++ +P LQ
Sbjct: 591 VGMKDVVAQGK---AAWSEGAAQSKGIDWLNLVSPTDIGYITSALQNASATGYIPKSLQI 647
Query: 698 -------GEITPDEAVKAYKSLLDFINKHGHAYDSNGPFYLDKYDPDKMLMVFKRFSGNP 750
+TP EA Y++ ++F+ +G+ +GP+ L ++P + + NP
Sbjct: 648 VENLSGITLVTPQEAKAGYEAAINFMKTYGNGLIGDGPYILVAWNPSAS-PPYAKLIRNP 706
Query: 751 ----IPPDYWKKTLLIARLVPKGAEVPARVMAGKPLTVKVMLTLKEEFPDWGEKPADRGY 806
+PP L + + +P+ V G+ LT VM T P
Sbjct: 707 YFHLVPPS---NALALPTMYSVSLSIPSTVSPGQTLTGTVMGTPAGSTT---AIPTPNAV 760
Query: 807 VTVSIVDANGNEVYSGEAKLTTAGTFELNVPGDETKGWSTGKYTAIIRGGLSKEVTSFTI 866
V + ++ NG+ + + ++G F VP S G Y + + + +
Sbjct: 761 VNIELLYPNGSIISGYQLMTNSSGQFTFTVPSS----LSPGSYLLSVSAYSNTSILINPV 816
Query: 867 KKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTSPTETTT 906
T VV+ P+ T+ TTTST TS+ T T S + +TT
Sbjct: 817 TYTLVVL-PSITTTTSTTTSTTTTTSTTTTTSVSTSLSTT 855
>pir||H75141 oligopeptide-binding protein appa precursor PAB0627 - Pyrococcus
abyssi (strain Orsay) >gi|5458360|emb|CAB49849.1|
(AJ248285) OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR
[Pyrococcus abyssi]
Length = 644
Score = 84.7 bits (206), Expect = 4e-15
Identities = 46/89 (51%), Positives = 58/89 (64%), Gaps = 8/89 (8%)
Query: 844 WSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQT---SSPTATGTS 900
W G ++ +K T+ + T PT T+ T+T TP QT SSPTAT TS
Sbjct: 559 WQMGGLKVLLNIKPAKATTTSSPTTT-----PTKTTSSPTSTPTPTQTPSTSSPTATSTS 613
Query: 901 PTETTTKGGICGPAILVGLAVLPLLLRRR 929
PTETTTKGGICGPA+LVG+AV+P+LLR+R
Sbjct: 614 PTETTTKGGICGPALLVGIAVVPILLRKR 642
>pir||A71163 hypothetical protein PH0502 - Pyrococcus horikoshii
>gi|3256907|dbj|BAA29590.1| (AP000002) 641aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 641
Score = 71.0 bits (171), Expect = 6e-11
Identities = 40/87 (45%), Positives = 51/87 (57%), Gaps = 1/87 (1%)
Query: 844 WSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQTTTSTPQQTSSPTATGTS-PT 902
W T +R + T+ TI +T K T + ++T T T SP+ T T+ PT
Sbjct: 553 WGTALAFLGVRPAKAITPTTSTIVQTVTKEKTETVTQEKTEVKTVTVTKSPSPTKTTTPT 612
Query: 903 ETTTKGGICGPAILVGLAVLPLLLRRR 929
TTTKGG+CGPA LVGL V+PLLLRRR
Sbjct: 613 TTTTKGGVCGPAALVGLVVVPLLLRRR 639
>gb|AAD28552.1|AF113969_1 (AF113969) pullulanase [Thermococcus hydrothermalis]
Length = 1337
Score = 70.2 bits (169), Expect = 1e-10
Identities = 34/61 (55%), Positives = 47/61 (76%), Gaps = 4/61 (6%)
Query: 874 KPTTT-SPQQTTTSTPQQTSSPTATGTSPTETTTK---GGICGPAILVGLAVLPLLLRRR 929
+PT T SP +TTT+TP +T++ T+T T P+ TTT GGICGP I+ GLA++PLLL+RR
Sbjct: 1277 EPTPTESPTETTTTTPSETTTTTSTTTGPSSTTTSTPGGGICGPGIIAGLALIPLLLKRR 1336
Query: 930 D 930
+
Sbjct: 1337 N 1337
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389197983
Number of Sequences: 2977
Number of extensions: 18503672
Number of successful extensions: 77336
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77240
Number of HSP's gapped (non-prelim): 30
length of query: 931
length of database: 189,106,746
effective HSP length: 56
effective length of query: 875
effective length of database: 155,591,474
effective search space: 136142539750
effective search space used: 136142539750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)