BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1194 (appB-1) DE:OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN
APPB
(353 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75027 oligopeptide transport permease protein appb PAB1194... 704 0.0
pir||A71212 probable oligopeptide transport system permease prot... 436 e-121
pir||A72537 probable oligopeptide transport permease protein APE... 274 9e-73
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 240 1e-62
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 171 1e-41
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 168 7e-41
pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 166 5e-40
pir||H72428 oligopeptide ABC transporter, permease protein - The... 165 8e-40
pir||B72367 oligopeptide ABC transporter, permease protein - The... 162 6e-39
pir||F72371 oligopeptide ABC transporter, permease protein - The... 154 2e-36
pir||C71130 probable oligopeptide transport permease protein APP... 153 3e-36
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 152 5e-36
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 151 1e-35
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 150 3e-35
pir||G71951 dipeptide transport system permease protein - Helico... 149 4e-35
pir||C64557 dipeptide ABC transporter, permease protein - Helico... 149 5e-35
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 148 1e-34
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 147 2e-34
pir||C83082 probable permease of ABC transporter PA4503 [importe... 146 4e-34
pir||B72393 oligopeptide ABC transporter, permease protein - The... 146 5e-34
pir||T34758 oligopeptide transport system integral membrane prot... 145 1e-33
emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 144 2e-33
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 142 5e-33
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 142 7e-33
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 139 6e-32
pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 138 8e-32
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 137 2e-31
pir||A72289 oligopeptide ABC transporter, permease protein - The... 137 2e-31
pir||C72284 oligopeptide ABC transporter, permease protein - The... 136 5e-31
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 134 1e-30
pir||G82301 peptide ABC transporter, permease protein VC0619 [im... 134 1e-30
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 134 1e-30
pir||H72420 oligopeptide ABC transporter, permease protein - The... 134 2e-30
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 134 2e-30
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 133 3e-30
pir||F75454 peptide ABC transporter, permease protein - Deinococ... 132 5e-30
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 132 6e-30
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 131 2e-29
pir||B71163 probable oligopeptide transport system permease prot... 130 2e-29
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 130 2e-29
pir||T35939 probable transport permease protein - Streptomyces c... 130 3e-29
pir||D71014 probable dipeptide transport system permease protein... 129 4e-29
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 129 5e-29
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 129 5e-29
pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 129 5e-29
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 128 9e-29
pir||B75381 peptide ABC transporter, permease protein - Deinococ... 127 2e-28
pir||T03433 probable transport protein accD - Agrobacterium tume... 127 2e-28
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 126 4e-28
pir||B72617 probable dipeptide transport system permease protein... 126 4e-28
pir||F72451 probable peptide transport system permease protein A... 126 4e-28
pir||A75142 oligopeptide transport system permease protein appb ... 126 4e-28
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 126 4e-28
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 125 6e-28
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 125 1e-27
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 123 3e-27
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 123 4e-27
pir||F75529 probable peptide ABC transporter, permease protein -... 122 5e-27
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 122 9e-27
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 121 1e-26
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 121 1e-26
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 121 1e-26
dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] 121 1e-26
pir||H83388 probable permease of ABC transporter PA2059 [importe... 120 2e-26
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 120 3e-26
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 120 3e-26
pir||F72215 oligopeptide ABC transporter, permease protein - The... 120 3e-26
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 119 6e-26
pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 119 6e-26
pir||C82242 oligopeptide ABC transporter, permease protein VC109... 119 6e-26
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 118 7e-26
pir||D72282 oligopeptide ABC transporter, permease protein - The... 118 7e-26
pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 118 7e-26
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 117 2e-25
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 117 2e-25
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 117 2e-25
pir||F72720 probable oligopeptide transport system permease prot... 117 2e-25
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 116 3e-25
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 116 5e-25
pir||B70789 probable peptidetransport system permease - Mycobact... 116 5e-25
pir||D71510 probable oligopeptide permease - Chlamydia trachomat... 115 9e-25
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 115 9e-25
pir||F83419 probable permease of ABC transporter PA1809 [importe... 115 1e-24
emb|CAC05748.1| (AL391751) putative peptide transport system int... 114 2e-24
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 114 2e-24
pir||E82442 probable peptide ABC transporter, permease protein V... 113 4e-24
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 113 4e-24
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 109 4e-23
emb|CAA68074.1| (X99740) oligopeptide transport system permease ... 109 5e-23
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 108 8e-23
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 108 8e-23
pir||T35980 probable peptide transport system permease - Strepto... 108 8e-23
pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 107 2e-22
pir||D72059 peptide ABC transporter, permease protein, probable ... 107 2e-22
pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 107 2e-22
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 107 2e-22
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 107 2e-22
pir||S47696 nickel transport system permease protein nikB - Esch... 107 2e-22
pir||S77118 oligopeptide transport system permease protein appB ... 107 2e-22
gb|AAC43494.1| (U35439) similar to YejB of Escherichia coli, Swi... 106 3e-22
pir||C71841 probable peptide ABC transporter, ATP-binding protei... 106 3e-22
pir||G81668 peptide ABC transporter, permease protein, probable ... 106 3e-22
emb|CAA20250.1| (AL031231) putative peptide transport system int... 106 4e-22
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 105 1e-21
pir||E72424 oligopeptide ABC transporter, permease protein - The... 105 1e-21
sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 103 4e-21
pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 103 4e-21
pir||C82170 peptide ABC transporter, permease protein VC1681 [im... 102 6e-21
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 101 1e-20
pir||C82876 oligopeptide transport system permease protein UU562... 101 1e-20
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 101 2e-20
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 100 2e-20
pir||D75573 peptide ABC transporter, permease protein - Deinococ... 99 7e-20
sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 99 9e-20
pir||E72300 oligopeptide ABC transporter, permease protein - The... 97 3e-19
pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 96 6e-19
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 95 1e-18
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 90 4e-17
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 90 5e-17
gb|AAC18097.1| (AF058302) membrane protein of putative ABC trans... 89 6e-17
pir||F82377 ABC transporter, permease protein VCA1099 [imported]... 87 4e-16
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 85 2e-15
sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 81 2e-14
pir||E81253 probable peptide ABC-transport system permease prote... 78 2e-13
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 76 8e-13
>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
(AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
[Pyrococcus abyssi]
Length = 353
Score = 704 bits (1796), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAK 60
MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAK
Sbjct: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAK 60
Query: 61 SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKII 120
SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKII
Sbjct: 61 SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKII 120
Query: 121 AVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMIL 180
AVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMIL
Sbjct: 121 AVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMIL 180
Query: 181 ILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIG 240
ILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIG
Sbjct: 181 ILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIG 240
Query: 241 VLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGM 300
VLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGM
Sbjct: 241 VLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGM 300
Query: 301 GRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQRL 353
GRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQRL
Sbjct: 301 GRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQRL 353
>pir||A71212 probable oligopeptide transport system permease protein appB -
Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
(AP000007) 349aa long hypothetical oligopeptide
transport system permease protein appB [Pyrococcus
horikoshii]
Length = 349
Score = 436 bits (1109), Expect = e-121
Identities = 218/356 (61%), Positives = 272/356 (76%), Gaps = 10/356 (2%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAK 60
MG G+YL R+ NA IVL IVT VVS LF KVA+ L + IQE IN E Q LA+
Sbjct: 1 MGLGKYLVIRIINALIVLSIVTLVVSALFVKVAEKDLENRIQELINS------EYQSLAQ 54
Query: 61 SD--PHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFG-ETSVR 117
P +EW+ + LDRP+W RV+ +K+T+MLDFG+ R PIFG E +V+
Sbjct: 55 RGRAPANPDEWRAERIAYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVK 114
Query: 118 KIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFG 177
II++A+PRT++LFTTA +IV+ +G++LG+KAAQ G FDR LS+ A+VTTSIPMWWFG
Sbjct: 115 NIISLALPRTILLFTTAQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFG 174
Query: 178 MILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
M+ +L+F+FKL P+ M P TG A+ DV K ++LP+ TIVFV FGGWAWVTRNI
Sbjct: 175 MMSLLIFAFKLGWFPANSMPD-PNLTGLAHVLDVAKRLVLPIFTIVFVLFGGWAWVTRNI 233
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
MI +QEDFIMAARAKGVPE KVIYGHALRAAAPPI+TMTIF+LLGSLGGAI+TESVFNW
Sbjct: 234 MITTMQEDFIMAARAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITESVFNW 293
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQRL 353
PGMGR+YW+AIQ E+NL+MG T+ISVALYL GV++AD++YGFLDPRV+VG S ++
Sbjct: 294 PGMGRVYWIAIQTNEINLVMGLTFISVALYLTGVIIADISYGFLDPRVRVGASAKM 349
>pir||A72537 probable oligopeptide transport permease protein APE1582 -
Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
(AP000062) 363aa long hypothetical oligopeptide
transport permease protein [Aeropyrum pernix]
Length = 363
Score = 274 bits (694), Expect = 9e-73
Identities = 143/362 (39%), Positives = 224/362 (61%), Gaps = 19/362 (5%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
R+ ++ NA I LL+ ++S +F LR + E+ + +R +L+ +++P
Sbjct: 5 RFAGAKILNAAITLLVALLLISGIFAVYTVTELRGRLAEEYVLALR---QLEVQYRNNPE 61
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRT----KKTMMLDFGDVRSPIFGETSV-RKI 119
LEE ++ Y+ L++ YGL F V T K + DFG + G T+V I
Sbjct: 62 LLEEKSRQLYENLMERYGLTGNFVQDVATWTVKLIKSNITFDFGVTQYSYIGGTNVIGDI 121
Query: 120 IAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMI 179
+ +A+ T +LF TA+LI +GI+LG + A+K G +FDRGLSVF M++ S P WW +I
Sbjct: 122 LLLAMKNTAILFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAII 181
Query: 180 LILLFSFKLNLLPSGG------MTSIPPKTG-FAYYTDV----LKHMILPLTTIVFVSFG 228
+IL+FSF L L P+ ++ +PP F + LK+M +P+ TIV VSFG
Sbjct: 182 MILIFSFYLRLFPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFG 241
Query: 229 GWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGA 288
G +++ RNI++G+LQEDF+ AARA+G+PE +VIYGH LR ++PPI+T +++G+ GGA
Sbjct: 242 GASYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGA 301
Query: 289 ILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
I+TE+VF WPGMG +YW+AIQQ + +++ ST++ +++ +L+ D Y LDPRV+ G
Sbjct: 302 IITEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVRTG 361
Query: 349 VS 350
+
Sbjct: 362 AT 363
>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
solfataricus]
Length = 348
Score = 240 bits (607), Expect = 1e-62
Identities = 128/352 (36%), Positives = 210/352 (59%), Gaps = 9/352 (2%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAK 60
MG+ Y+ ++ F VLL ++ I + +++ SI Q+ +T +
Sbjct: 1 MGFTTYMIKKVLIYFSVLLATLTILYIFTFPILQEVIAKSINFQVAQFSQTLFKNAHNLN 60
Query: 61 SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSVR 117
S + K RE L+ AYGL++P + + M DFG +++P G V
Sbjct: 61 STQIQIAVEKYRE--SLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPS-GSREVS 117
Query: 118 KIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFG 177
IIA +P T++LFTTA+++ + G ++GL +A+ +++ +++ A++ +SIP WW G
Sbjct: 118 SIIAYYLPNTILLFTTATIVFIVAGTIIGLLSAKSK--FWEKVIAIIAVIHSSIPTWWLG 175
Query: 178 MILILLFSFKLNLLPSGGMTSIPP-KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRN 236
+LI ++ + + P GGMTS+PP K F Y VL HM LPL TI V+ GG+A++ R+
Sbjct: 176 FVLIAALAYAVKVFPPGGMTSVPPPKNPFDYGISVLYHMALPLITIFIVNVGGFAYIVRS 235
Query: 237 IMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFN 296
++ +++EDF++ A+A+G+P ++++Y H LR+ +P I T I L GSLGG++ TE VF
Sbjct: 236 LVTSIMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVVFE 295
Query: 297 WPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
WPG+G L +VAI +L +I+G TY+ + L+G+ L +L YG LDPR+KVG
Sbjct: 296 WPGVGLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIKVG 347
>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
>gi|2126889|pir||I40546 oligopeptide ABC transporter
(permease) appB - Bacillus subtilis
>gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 317
Score = 171 bits (428), Expect = 1e-41
Identities = 93/296 (31%), Positives = 167/296 (56%), Gaps = 9/296 (3%)
Query: 55 LQKLAKSDPHAL---EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIF 111
+ K A DP L + + + ++ ++ YGL+ P +V+ + + DFG S +
Sbjct: 26 IMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDPQYVQYLKWLGNMVQGDFGT--SIVR 83
Query: 112 GETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSI 171
T V ++I +P T++L ++++ + + I G+ +A++ D G++ + + +I
Sbjct: 84 KGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVLSAKRPYSKIDYGITFTSFIGLAI 143
Query: 172 PMWWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWA 231
P +WFG+ILI++ S L P+GG+ ++ T F + D + H+ILP + G
Sbjct: 144 PNFWFGLILIMVLSVNLGWFPTGGVETL--NTEFNIF-DRIHHLILPAFVLATADMAGLT 200
Query: 232 WVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILT 291
TR+ M+ VL +D+I ARAKG EN+V++ H LR A P+IT+ + +GG+++
Sbjct: 201 RYTRSNMLDVLNQDYIRTARAKGFKENRVLFKHGLRNALLPVITIFGLMIPSFIGGSVVV 260
Query: 292 ESVFNWPGMGRLYW-VAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
E +F WPG+G+L+ A Q+ + +IM T IS L ++G L+AD+ Y +DPR++
Sbjct: 261 EQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVISAVLVVVGNLIADILYAIVDPRIE 316
>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 337
Score = 168 bits (422), Expect = 7e-41
Identities = 114/349 (32%), Positives = 177/349 (50%), Gaps = 37/349 (10%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
Y+ RL I LL+ + ++S ++A ++Q+ K P
Sbjct: 15 YVVQRLIEGLITLLLAS-LLSFAIVQLAPGSYLDTLQQN--------------PKISPET 59
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVID-RTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
L++ K + +GLD+P++V+ T+ +FG+ S ++ SV ++ I
Sbjct: 60 LQQLKVQ--------FGLDQPWYVQYWRWLTQVVTRFNFGE--SFVYNR-SVASLLIERI 108
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T++L T+ ++ + I LG+ A + DR L V + + P + ++L+ L
Sbjct: 109 PATLLLAITSIILTWAIAIPLGIVGAVQQNTFIDRSLRVISYIGQGFPSFITALLLLFLA 168
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYT------DVLKHMILPLTTIVFVSFGGWAWVTRNIM 238
LLP G MTSI FA ++ DV HMILP + SF G + R +
Sbjct: 169 QSVSPLLPVGDMTSID----FAEFSWPHKVWDVAWHMILPTLALSITSFAGLQRLMRGQL 224
Query: 239 IGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWP 298
+ VL++D+I ARAKG+PEN+VIY HALR A P+IT+ F L GA + E FNWP
Sbjct: 225 LDVLRQDYIQTARAKGLPENRVIYVHALRNAINPLITILGFEFASLLSGAFIAEFFFNWP 284
Query: 299 GMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
G+GRL A+ +L L+MGS + L ++G LLADL F DPR+++
Sbjct: 285 GLGRLILQAVTAQDLYLVMGSLMMGATLLIVGNLLADLLLKFTDPRIQL 333
>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
Pyrococcus abyssi (strain Orsay)
>gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 310
Score = 166 bits (415), Expect = 5e-40
Identities = 97/266 (36%), Positives = 144/266 (53%), Gaps = 16/266 (6%)
Query: 82 GLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFL 141
GLDRP +++ ID K + DFG + + V ++IA + T+ L TA +I
Sbjct: 57 GLDRPLYIQYIDWMSKVLRGDFG---TSLVQGVPVSELIAGRLSYTLKLTVTAWIIAWVF 113
Query: 142 GIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPP 201
G++ G+ AA LFD + A+ S+P +W G++LIL+F KL +LP G
Sbjct: 114 GLVFGMLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGD--- 170
Query: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
+H+ILP T+ A +TR M+ VL++D+IM ARAKG+PE V+
Sbjct: 171 ----------WRHLILPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKGLPERMVV 220
Query: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
Y HALR A P++T + GGA++TE+VF WPGMG L +AI Q + ++
Sbjct: 221 YKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYPVVQAIVL 280
Query: 322 ISVALYLIGVLLADLAYGFLDPRVKV 347
I L +I LAD+ Y +DPRV++
Sbjct: 281 IIGVLTVIANFLADITYTIIDPRVRI 306
>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 338
Score = 165 bits (413), Expect = 8e-40
Identities = 106/346 (30%), Positives = 176/346 (50%), Gaps = 20/346 (5%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
+YL R + ++ T +V IL + + L + L ++A+++P
Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSG-----------LSRVAQANPE 56
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
A+ ++ L++ +GL +P++V+ + K + D G S F V +I I
Sbjct: 57 AIRAAERT----LMEEFGLGKPWYVQYFEFITKALRGDLGT--SITFYPRKVIDLIIPVI 110
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T++L A+++ LG LG AA K D+G+ +++ + IP +W GMI I LF
Sbjct: 111 PWTLILLLPATIVAWILGNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLF 170
Query: 185 SFKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
KL LP G S P ++++ DVLKH I+P +IV + GGWA R ++I L
Sbjct: 171 GVKLGWLPVQGAYSQGTIPNLSWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYEL 230
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
D+ M + G+ ++K I+ + R + P IT +L G LGGA++TE VFN+PG G
Sbjct: 231 GSDYAMFSEYLGM-KDKRIFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGY 289
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
L + A+ ++ LI G I +A + + D Y +DPR+++G
Sbjct: 290 LLFRALTTLDYPLIQGIFVILIASIYLANFIVDFLYALIDPRIRLG 335
>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 321
Score = 162 bits (406), Expect = 6e-39
Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 29/344 (8%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
+Y+A RL L+I++F+V I+ D L + + DP
Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGDFL-------------------DMYRLDPS 43
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+++ +++ K GLD+P+ V+ K + DFG + V +I +
Sbjct: 44 VSQQF----LEKMEKELGLDKPWIVQYGIWLKNVLKGDFG---YSFYYRRPVSTLIWERV 96
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
TV+L ++ LGI++G+ +A K ++D+ L+V A ++P +F IL+L
Sbjct: 97 FATVILSVSSLAFEWLLGIIVGVFSALKKYSIWDKILTVVAFSGIALP-GFFLAILLLYM 155
Query: 185 SFKLNLLPSGGMTSIPPK--TGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
+ K P GM S+ T + + D+ H++LP + F F R ++ VL
Sbjct: 156 AAKTGWFPIAGMVSVNHNQMTTWEKFKDIASHLVLPTIALGFGGFASLMRYMRGSLLDVL 215
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
ED++ ARAKG+PE VIY HALR A P+IT F++ LGGA++ E++F WPGMGR
Sbjct: 216 NEDYVEFARAKGMPERVVIYKHALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGR 275
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
L + A+ Q ++ ++M S IS + +IG L+AD+ +DPRV+
Sbjct: 276 LIYQALLQQDIYIVMASAVISAIMLVIGNLVADVLLAAVDPRVR 319
>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 345
Score = 154 bits (385), Expect = 2e-36
Identities = 106/364 (29%), Positives = 179/364 (49%), Gaps = 43/364 (11%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
Y+ RL ++LL VTF+V + + D L + A +P+
Sbjct: 4 YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLA-------------------AYVNPNM 44
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
L++ + D L + YGL+ F VR + T+ GD+ + G+ V+ + +P
Sbjct: 45 LDKLTPEQMDALKEKYGLNDFFVVRYVKWLANTLR---GDLGWSLVGKEPVKDALLRRLP 101
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
TV L A V+F+GI LG+KAA G D + +FA+V S P + FG++++++F
Sbjct: 102 YTVELALYAIFPVVFVGIWLGVKAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFY 161
Query: 186 FKLNLLPSGGMT----SIPPKTGFAYYT-----------------DVLKHMILPLTTIVF 224
LN LP G ++ + F YT D LKH+I P+ T+ +
Sbjct: 162 SILNWLPPGNLSMWAEEVIKSPEFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSW 221
Query: 225 VSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGS 284
+ + +TR+ M+ VL ++++ ARAKG+PE+ VI HA R A P+ T+ ++G
Sbjct: 222 LWWAYLLRITRSSMLEVLNKEYVRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGL 281
Query: 285 LGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPR 344
G ++ E+VFN G+G A Q++ +M S + ++G L+ D+ Y +DPR
Sbjct: 282 FSGTVIVETVFNRTGVGSFTAQAALQLDYASVMASALFFSTILVVGNLIIDILYALIDPR 341
Query: 345 VKVG 348
+++G
Sbjct: 342 IRLG 345
>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
long hypothetical oligopeptide transport permease
protein APPB [Pyrococcus horikoshii]
Length = 323
Score = 153 bits (383), Expect = 3e-36
Identities = 90/282 (31%), Positives = 146/282 (50%), Gaps = 6/282 (2%)
Query: 68 EWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
E+ EY + ++A +GLD+P +R + K + D G + V K+I I +
Sbjct: 44 EYSTEEYIKAIEARWGLDKPIHIRFLIYMKNLLHGDLGYSYRYL---EPVSKLIMERIGK 100
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
T++L + ++ +G+ L AA+K GG D LS+ ++ S+P +W G++LIL+F
Sbjct: 101 TLLLTVPSIILAFLVGVWLARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGV 160
Query: 187 KLNLLPSGGMTSIPP--KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
KL +LP GMT+I + + D+LKHM+LP+TT++ + + +TR +I E
Sbjct: 161 KLGILPIAGMTNIRAVYSSSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTE 220
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
D++ A G + + + R A P +T+ L + GA L E VF WPGMGRL
Sbjct: 221 DYVKTFDAVGFSKKHIFNKYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLL 280
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
A + LIMG + + + + DL Y LDPR++
Sbjct: 281 LDAAFARDYPLIMGIYLVIAVSVAVAIFITDLLYAVLDPRIR 322
>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 330
Score = 152 bits (381), Expect = 5e-36
Identities = 93/275 (33%), Positives = 152/275 (54%), Gaps = 17/275 (6%)
Query: 73 EYDRLLK-AYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLF 131
E +R+L+ + GLD+ + + +D + + LDFGD S ++G+ V +I+A +P T+ L
Sbjct: 69 EQERVLRHSLGLDQSLFAQYLDYLRGLLHLDFGD--SLVYGQP-VSEILADRLPATIELA 125
Query: 132 TTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLL 191
A + + + I G+ AA + G D+ + ++ S P +W G++LIL+F+ L L
Sbjct: 126 AAALAVTLVVAIPAGIVAAMRRGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRAL 185
Query: 192 PSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAAR 251
P+ G + L +++LP T+ S A + R+ +I VL D I +AR
Sbjct: 186 PASGYGT-------------LANLVLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSAR 232
Query: 252 AKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQM 311
AKG +V+ H LR A+ P++T+ + LGGAILTE VF+WPG+G+L AI
Sbjct: 233 AKGFGPLQVVLRHGLRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNR 292
Query: 312 ELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ L+ + A +++ LL DL+Y FLDPRV+
Sbjct: 293 DFPLVQATVLFFAATFVVVNLLVDLSYSFLDPRVR 327
>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1073367|pir||S47765 dipeptide transport system
permease protein dppb - Escherichia coli
>gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
(AE000431) dipeptide transport system permease protein 1
[Escherichia coli K12]
Length = 339
Score = 151 bits (378), Expect = 1e-35
Identities = 98/292 (33%), Positives = 149/292 (50%), Gaps = 27/292 (9%)
Query: 76 RLLKAYGLDRPFWVRVIDRTKKTMMLDFG---DVRSPIFGETSVRKIIAVAIPRTVMLFT 132
+LL GLD+P W + + M D G R P++ E R + + M+F
Sbjct: 51 QLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFA 110
Query: 133 TASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLP 192
TA +GI +G+ AA K G +FD A+ S+P++W+GM+LI+L S NL P
Sbjct: 111 TA------VGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTP 164
Query: 193 SGGMTS-------IPPKTGFAY-----------YTDVLKHMILPLTTIVFVSFGGWAWVT 234
G S P TGF + D + HMILP + + +T
Sbjct: 165 VSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMT 224
Query: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294
R+ M+ VL ED+I ARAKG+ +VI HALR A P++T+ + L GAILTE++
Sbjct: 225 RSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETI 284
Query: 295 FNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
F+WPG+GR A+Q+ + ++ G + + ++ LL DL YG ++PR++
Sbjct: 285 FSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336
>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
>gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
family) [Aquifex aeolicus]
Length = 327
Score = 150 bits (374), Expect = 3e-35
Identities = 105/353 (29%), Positives = 165/353 (45%), Gaps = 40/353 (11%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
+++ +R+ A LL VTF+ ++ D L +Q+ + + PE
Sbjct: 3 KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYL-----DQLRLNPQISPET--------- 48
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+RL YGLD+P V+ K + D G V ++I I
Sbjct: 49 ---------IERLKHLYGLDKPLLVQYFLWLKNALFFDLG---YSFQYHAPVAELILERI 96
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T++L +++L L I LG AA K LFDR + F+ S+P ++ +L L F
Sbjct: 97 PNTLLLSVSSALFAWLLSIPLGTLAAFKENSLFDRFVVGFSYTFMSVPSFFLAFLL-LFF 155
Query: 185 SFKLNLLPSGGMTS-------IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
+ K +LP GGM S IP K D+LKH+I+P T+ VS + R+
Sbjct: 156 ASKTGILPVGGMQSPNFEQLSIPEKV-----LDILKHLIIPSLTLGLVSLASLTRLVRSS 210
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
++ +L + +AKGV ++ H L+ A P T+ + + + GA L E + W
Sbjct: 211 VLEILSSPMVTMLKAKGVGTFTLVR-HVLKNAMNPFTTLLGYEIASLISGAALIEIIVGW 269
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVS 350
PGMG L A+ +L L+MG YI + L+G L+ADL ++DPRV+ +S
Sbjct: 270 PGMGMLMLNAVLSQDLFLVMGGLYIGTIMLLVGNLIADLLLAYIDPRVRKRLS 322
>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
(strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 334
Score = 149 bits (373), Expect = 4e-35
Identities = 95/296 (32%), Positives = 153/296 (51%), Gaps = 18/296 (6%)
Query: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
E+ + D L + +GL++P + + +FG S + GE + + P
Sbjct: 41 EKANQAAIDALREQFGLNKPLIEQYFFFINNVLHGNFGT--SIMTGEPVMHEFWQ-RFPA 97
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
TV L A + + LGI +G+ AA K +FD FA+ S+P++W G++LI +FS
Sbjct: 98 TVELALIALFMALVLGISVGVLAAIKRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSV 157
Query: 187 KLNLLPSGGMTS----IPPKTG-----------FAYYTDVLKHMILPLTTIVFVSFGGWA 231
+L LP G S + TG + + D +KH+ILP + VS A
Sbjct: 158 QLGWLPVFGRLSDVYYLDGPTGLYLIDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIA 217
Query: 232 WVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILT 291
+TR M V +ED++ A+AKG +VI+ H LR A P+ T+ L G LGG+++T
Sbjct: 218 RMTRASMAEVSKEDYVRTAKAKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMIT 277
Query: 292 ESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
E+VF+WPG+G+ A+ Q + +I + I +Y+ LL D+ Y F+DPR+++
Sbjct: 278 ETVFSWPGIGKWIVNALNQRDFPIIQSMSLIIAMMYIGANLLVDVLYAFIDPRIRL 333
>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
dipeptide ABC transporter, permease protein (dppB)
[Helicobacter pylori 26695]
Length = 334
Score = 149 bits (372), Expect = 5e-35
Identities = 95/296 (32%), Positives = 153/296 (51%), Gaps = 18/296 (6%)
Query: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
E+ + D L + +GL++P + + +FG S + GE + + P
Sbjct: 41 EKANQAAIDALREQFGLNKPLIEQYFFFINNVLHGNFGT--SIMTGEPVMHEFWQ-RFPA 97
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
TV L A + + LGI +G+ AA K +FD FA+ S+P++W G++LI +FS
Sbjct: 98 TVELALIALFMALVLGISVGVLAAIKRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSV 157
Query: 187 KLNLLPSGGMTS----IPPKTG-----------FAYYTDVLKHMILPLTTIVFVSFGGWA 231
+L LP G S + TG + + D +KH+ILP + VS A
Sbjct: 158 QLGWLPVFGRLSDVYYLDGPTGLYLIDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIA 217
Query: 232 WVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILT 291
+TR M V +ED++ A+AKG +VI+ H LR A P+ T+ L G LGG+++T
Sbjct: 218 RMTRASMAEVSKEDYVRTAKAKGCSSFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMIT 277
Query: 292 ESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
E+VF+WPG+G+ A+ Q + +I + I +Y+ LL D+ Y F+DPR+++
Sbjct: 278 ETVFSWPGIGKWIVNALNQRDFPIIQSMSLIIAMMYIGANLLVDILYAFIDPRIRL 333
>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
[Agrobacterium tumefaciens]
Length = 323
Score = 148 bits (369), Expect = 1e-34
Identities = 103/341 (30%), Positives = 171/341 (49%), Gaps = 33/341 (9%)
Query: 7 LAYRLTNAFIVL-LIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
L RL A + L +I T V SI++ D +L + PE + P A
Sbjct: 11 LGSRLITALVQLWVIATLVFSIMYIMPGDPVL-----------LLLGPE----SNPSPEA 55
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
+ + + GLD+P + + GD+ + + G SV + I +IP
Sbjct: 56 VAAMRHQ--------LGLDQPVMSQYLKWLGNAAS---GDLGNSVDG-VSVVEYITASIP 103
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
+T+ L T A ++ +G+ +G+ AA + G D L+ + + S+P++ G +LIL+FS
Sbjct: 104 KTMELATAAIILASIIGVPIGIAAALRRGRFLDSLLTSLSTLGISLPVYILGSLLILMFS 163
Query: 186 FKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQED 245
KL LPS G T I ++ F ++ + + LP T+ A +TR+ M+ +L D
Sbjct: 164 LKLGWLPSSGYTDIS-RSVFLHF----QKLTLPAVTLGLGLAASIARMTRSSMLEILGRD 218
Query: 246 FIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYW 305
F+ + RA+G+ E +VI+ H LR AA PI+T+ L +GG +L E+++NWPG+ L
Sbjct: 219 FVRSLRARGMRERRVIWVHVLRNAAIPIVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLV 278
Query: 306 VAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
A+ L+ GS AL+++ L D+ Y LDPR++
Sbjct: 279 TAVSNRNYPLVQGSILTIAALFILINLCVDILYSLLDPRIR 319
>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
solfataricus]
Length = 343
Score = 147 bits (368), Expect = 2e-34
Identities = 101/358 (28%), Positives = 179/358 (49%), Gaps = 40/358 (11%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
++ R+ NAFI L+++ +V I+ +A + L + R+ T P HA
Sbjct: 8 FIIRRIINAFITLILLIILVFIMIHIIAPNPLALA-------RLYTGP----------HA 50
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
E +++ K YGLD+P ++++I+ + +FG P + + V +I +P
Sbjct: 51 TYT----ELEQVAKQYGLDQPLYIQIINYIINVLHGNFGI--DPTY-KVPVITLIGKYLP 103
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
RT+ L A+++ + +G+ G AA D + +VT + P + +IL L+ +
Sbjct: 104 RTLELVIPATILSVVIGLFTGAIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIA 163
Query: 186 FKLNLLPSGGMTS---IPPKT-------------GFAYYTDVLKHMILPLTTIVFVSFGG 229
+ L LLP G + PPK+ + Y++ ++ HM+LP+ I VSFG
Sbjct: 164 YYLRLLPPTGTVNPVLTPPKSITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGI 223
Query: 230 WAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAI 289
+ R M+ ++ DF + KG+ +V+YG LR A+ P++T+ S+ GA+
Sbjct: 224 VTRIARASMLDYMESDFAKLSLMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAV 283
Query: 290 LTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+ E +F + GMG AI+ ++ I+G+T I +I L+AD+ YG LDPRV++
Sbjct: 284 VIEDIFQYHGMGYFITQAIESLDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVRI 341
>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 336
Score = 146 bits (365), Expect = 4e-34
Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 24/287 (8%)
Query: 78 LKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSVRKIIAVAIPRTVMLFTTA 134
L GLD+P + + +D + G P++ E T+ L A
Sbjct: 53 LHRLGLDKPLYQQYLDYVGNLAQGNLGKSIRTHEPVWNE------FLTLFSATLELSFAA 106
Query: 135 SLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPS- 193
L LG++ G+ AA K G +FD G+ ++ S+P++W+G++LI+LFS L P
Sbjct: 107 MLFAGTLGLLAGVVAALKRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVS 166
Query: 194 ---GGMTSIPPKTGFAY-----------YTDVLKHMILPLTTIVFVSFGGWAWVTRNIMI 239
G + + PKTGF + D ++H+ILP + + A +TR+ M+
Sbjct: 167 DRIGVLYEVEPKTGFMLIDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAML 226
Query: 240 GVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPG 299
VL+ED++ ARAKG+ +V++ HALR A P++T+ + L GA+LTE++F+WPG
Sbjct: 227 EVLREDYVRTARAKGLSPARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPG 286
Query: 300 MGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+G+ AI + ++ + L ++ + D+ YG +PR++
Sbjct: 287 IGKWLIDAISARDYPVVQNGILLVATLVILVNFVVDILYGLANPRIR 333
>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 146 bits (364), Expect = 5e-34
Identities = 96/344 (27%), Positives = 177/344 (50%), Gaps = 21/344 (6%)
Query: 6 YLAYRLTN-AFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
YL RL ++V++ +T V I D I++ +N R+R + + P
Sbjct: 7 YLIPRLIQYVYMVVIGITLVFLIPRLSPVDP-----IEQILNTRLR-------IQNTTPE 54
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
A+ K RE + + YGL W + ++ K+ + DFG S ++ SV +I ++
Sbjct: 55 AVI--KMREV--MEELYGLKGTLWEQYVNLWKRLLKGDFGP--SMVYYPASVISLIRNSL 108
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ L T +LI LG+++G + L+ M IP + F + L+LLF
Sbjct: 109 PWTIGLLTLTTLISWVLGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLF 168
Query: 185 SFKLNLLPSGGMTSIPPKTG--FAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
+ + P GG S+ K +++ DV+KH LP +++ + F GW T+ ++ +
Sbjct: 169 CYVFPIFPLGGGFSVGQKISLSWSFILDVIKHGTLPALSLIILGFAGWGLGTKILVQNLR 228
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
+ED+++ AR G+ +K+++ + LR A P +T +L G GGA++TE +F +PG+G
Sbjct: 229 EEDYVVYARMMGLRNSKILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIGT 288
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
L + A++ + N+++ ++ S+ +L+ DL Y +DPR++
Sbjct: 289 LAYNAVRANDYNVMIAISFFSIIAVATALLILDLLYPLIDPRIR 332
>pir||T34758 oligopeptide transport system integral membrane protein -
Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
(AL031184) oligopeptide transport system integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 145 bits (361), Expect = 1e-33
Identities = 104/351 (29%), Positives = 173/351 (48%), Gaps = 32/351 (9%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVAD----DMLRSSIQEQINMRVRTDPELQKLAKS 61
YL RL A ++L+++ VV +F V D+ + + +Q + + +KL
Sbjct: 4 YLIRRLFAAAVMLVVIILVVFCIFFLVPKWAGVDIALNFVGKQADPAA-VEGVREKLGLG 62
Query: 62 DPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFG-----ETSV 116
DP ++ W+ F+ + D +P FG E SV
Sbjct: 63 DPVFVQAWE----------------FFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSV 106
Query: 117 RKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWF 176
++ P T+ L A+++ + G+ G+ +A K G L+DRG V A+ S+P+++
Sbjct: 107 WPVLTERFPVTLALALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFT 166
Query: 177 GMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRN 236
G++ + +FS+ L + + TG+ L MILP T+ F+ +A +TR
Sbjct: 167 GLLSLAIFSYGLGWIDGEFVPLEDSLTGW------LGGMILPWITLAFLYAAMYARITRA 220
Query: 237 IMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFN 296
M+ +L ED+I ARAKG+ E VI HA+R+ P++TM L +GGAILTE+ F+
Sbjct: 221 TMLEILGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFS 280
Query: 297 WPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
PG+G+ AI+ +L I+G I+ LI L+ D+ Y +DPRV++
Sbjct: 281 LPGLGQKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVRL 331
>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
related protein [Thermoplasma acidophilum]
Length = 343
Score = 144 bits (359), Expect = 2e-33
Identities = 98/359 (27%), Positives = 170/359 (47%), Gaps = 36/359 (10%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
R LA+ + A + + ++ +FT I++ L +L +PH
Sbjct: 4 RTLAFIIRRAIYAIFTLLILIVFIFTL-------------IHIIAPNPLALARLYAGNPH 50
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
A + E + K YGL+ P + +VI+ K + G++ + V K+I +
Sbjct: 51 ASQS----ELIGIEKKYGLNLPIYDQVINYIKDVFI---GNLGYDYLHDQPVLKLIGEYL 103
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ T ++ + +G+ G AA + D + + T S+P + +L L
Sbjct: 104 PITLEFVLTGIVLSVIIGLFTGAYAAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYI 163
Query: 185 SFKLNLLPSGGM---TSIPPKTGFA-------------YYTDVLKHMILPLTTIVFVSFG 228
++ L LLP+ GM T PP A Y + V+ HMILP ++ +SFG
Sbjct: 164 AYDLKLLPATGMVNPTLKPPPNVLAFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFG 223
Query: 229 GWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGA 288
+TR+ M+ ++ D+ KG+P K +YG ALR AA P++T + ++GGA
Sbjct: 224 VITRLTRSTMLDIMDMDYFRLTIMKGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGA 283
Query: 289 ILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
++ E +F++ GMG A+ ++ I+G+T I ++ L+AD+ YG LDPRV++
Sbjct: 284 VVIEDIFSYHGMGYYIVQAVYNLDYPGILGTTIIIAIAVIVANLVADVLYGILDPRVRL 342
>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
>gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
sp. NGR234]
Length = 313
Score = 142 bits (355), Expect = 5e-33
Identities = 92/295 (31%), Positives = 154/295 (52%), Gaps = 11/295 (3%)
Query: 55 LQKLAKSDPHAL---EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIF 111
L +LA DP A+ ++ + + GL+ P V+ + + +FG + +F
Sbjct: 26 LLRLAPGDPAAVIAGPTATEQMVANIREELGLNEPLPVQFVHWASDVLRGNFG---ASVF 82
Query: 112 GETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSI 171
V ++++ + T+ L ++ + +G+ G+ AA ++GG DR L+ F+ + S+
Sbjct: 83 TGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSV 142
Query: 172 PMWWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWA 231
P++ G ILI F+ + LP G TSI G A + H+ILP T+ A
Sbjct: 143 PVFVIGYILIYFFAIQTRWLPVQGYTSI--NQGVAPW---FLHLILPTVTLSVPYIAFIA 197
Query: 232 WVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILT 291
+TR M+ VL ED++ A AKG +++ HAL+ A PI+T+ + +GG +LT
Sbjct: 198 RITRGSMLEVLSEDYMRTAAAKGASPFAMLFHHALKNAGVPILTVIGISFAYMIGGVVLT 257
Query: 292 ESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
E+VFN PG+GRL AI+ + +I + LY++ LL DLAY +DPR++
Sbjct: 258 ETVFNVPGIGRLVVDAIKNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIR 312
>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
transporter, permease protein (dppB) homolog -
Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppB) [Archaeoglobus fulgidus]
Length = 354
Score = 142 bits (354), Expect = 7e-33
Identities = 90/287 (31%), Positives = 144/287 (49%), Gaps = 18/287 (6%)
Query: 75 DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTA 134
++L GLD+P+ + I+ K D G +S I+G+ V I P T+ L
Sbjct: 70 EKLRHEAGLDKPYHEQYIEYLKGVFTGDLG--KSMIWGKRPVIAEIMDHFPATLELTIFG 127
Query: 135 SLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
++ + +G+ G AA + G D G+ ++++V ++ + WFGM+L +LF L +LP G
Sbjct: 128 FILSVLIGVATGSIAAFRRGSKVDSGMRIYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIG 187
Query: 195 GMTSI--PPKTGFAYYT-------------DVLKHMILPLTTIVFVSFGGWAWVTRNIMI 239
G + P+T Y D L H+ LP T+ V G + + RN +I
Sbjct: 188 GRITPGNTPETITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLI 247
Query: 240 GVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPG 299
VL +DFI A RA+GV KV++ HA++ A P++T+ L GA+LTES F+WPG
Sbjct: 248 DVLSQDFIKAYRARGVRNRKVVF-HAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPG 306
Query: 300 MGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
MG I+ + + G+ + L+ D+ Y LDPR++
Sbjct: 307 MGTFLIERIEYRDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIR 353
>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 333
Score = 139 bits (346), Expect = 6e-32
Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 2/247 (0%)
Query: 104 GDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSV 163
G++ I V ++IAVA+P T+ + T+ LI FLGI LG K G D +V
Sbjct: 85 GNLGFSIISNVPVAELIAVALPWTLFIVVTSILISFFLGIRLGQKLGYLRGTKTDSVATV 144
Query: 164 FAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPPKTGF--AYYTDVLKHMILPLTT 221
+ S+P++ + ++LI + +F ++ P+GG SI GF + VL H LP+ T
Sbjct: 145 SLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIHVTPGFNLPFIASVLYHAFLPILT 204
Query: 222 IVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTL 281
+ V+ GW R I VL EDF+ A GV ++ + + + A P+ T I ++
Sbjct: 205 LTIVNLVGWILQMRANTIYVLGEDFVNFAEISGVKKDIIEKKYIGKNAILPLYTSLIISI 264
Query: 282 LGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFL 341
S G++ E F++PG+G L +I + MG I + ++G L+ADL Y FL
Sbjct: 265 GFSFSGSVFVEQTFSYPGVGNLLINSITSNDYPTEMGVFIIIIVAVIVGNLIADLTYSFL 324
Query: 342 DPRVKVG 348
DPR KVG
Sbjct: 325 DPRAKVG 331
>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
Pyrococcus abyssi (strain Orsay)
>gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 330
Score = 138 bits (345), Expect = 8e-32
Identities = 104/358 (29%), Positives = 163/358 (45%), Gaps = 36/358 (10%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSS-IQEQINMRVRTDPELQKLA 59
MG+ +YL + IV+ +TF+ ++ + ++ IQ IN + P+
Sbjct: 1 MGFKQYLKRK-----IVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQ----- 50
Query: 60 KSDPHALEEWKKREYDRLLK----AYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETS 115
E + LLK YGL++P +V+ I+ K + GD+ I S
Sbjct: 51 -------------ERETLLKFYEDLYGLNKPLYVQFINFWKSLLR---GDLGYSILYRDS 94
Query: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
V II A+P + + A ++ +G LG A + +D+ L SIP +W
Sbjct: 95 VSNIIKHALPYDIAILFPAIVLSWIIGNWLGALAGKNKK--YDKYLMPVFYFLASIPYFW 152
Query: 176 FGMILILLFSFKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
F M+L+ KLN+ P G S + P + D LKH ILP ++ V G WA
Sbjct: 153 FAMVLVYFLGVKLNIFPYQGAYSQNLVPSFSITFIVDFLKHWILPFLSLFIVMIGSWAIG 212
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
RN++I L+ D++ A G E K++ HA R A P +T L + GAI TE
Sbjct: 213 MRNMIIYELEADYVRYLEALGASE-KLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEI 271
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351
VFN+PG+G L A + L+ G + + L+ + D+ Y +DPRV+V +
Sbjct: 272 VFNYPGVGVLLMHAALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVRVSYEE 329
>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 137 bits (342), Expect = 2e-31
Identities = 81/280 (28%), Positives = 143/280 (50%), Gaps = 16/280 (5%)
Query: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
E+ + + D+L + GLD+PF V+ K + L GD TS ++ +P
Sbjct: 40 EDASQEDIDQLTASLGLDQPFLVQY---GKYLLNLVQGDFGESFRYNTSALPLVLERLPA 96
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
T+ L A ++ + + I LG+ +A K D + +++ ++P +W G++LIL+FS
Sbjct: 97 TLELAVAALVLAVAMAIPLGVWSATKQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSV 156
Query: 187 KLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDF 246
L P G + L H++LP T+ + R+ MI +L +D+
Sbjct: 157 MLGWFPVSGRGT-------------LGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDY 203
Query: 247 IMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWV 306
I AR+KG+ E V+Y HA R + P++T+ +GG ++TE+VF+WPG+G+L
Sbjct: 204 IRTARSKGIREGMVVYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQ 263
Query: 307 AIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
A+ ++ ++ ++ L + L+AD+ Y LDPR+K
Sbjct: 264 AVHTRDMAIVQACVFVIAILVIFMNLVADVLYRLLDPRIK 303
>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 137 bits (341), Expect = 2e-31
Identities = 97/310 (31%), Positives = 152/310 (48%), Gaps = 25/310 (8%)
Query: 52 DPELQKLAKSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIF 111
DP L L P + E K+ E GLD+P V+ D + D G +S +
Sbjct: 35 DPVLAILGGKAPKEVIEQKRHEL-------GLDKPIIVQFFDYIGDLLKGDLG--KSTLT 85
Query: 112 GETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSI 171
G V + I P T+ L A ++ + +GI G AA K D G +F+MV ++
Sbjct: 86 GRP-VWEEIKERFPATLELTLFAFIVAVLIGIFWGSFAAYKRDSGVDIGARMFSMVMYAV 144
Query: 172 PMWWFGMILILLFSFKLNLLPSGGMTS----IPPKTGF----AYYT-------DVLKHMI 216
P++WFG+++ +F L LP GG S + TG A +T DV +H++
Sbjct: 145 PVFWFGLMMQYIFGVILRWLPVGGRLSPTMNLKVITGIYSIDALFTGNWEALKDVFEHLL 204
Query: 217 LPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITM 276
LP T+ V + + RN + L +DF+ AARA+G+ E V++ +AL+ A PI TM
Sbjct: 205 LPGLTLGLVISSVFVRMVRNNTVLTLAQDFVKAARARGLKERVVLFRYALKNALVPIFTM 264
Query: 277 TIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADL 336
LGGA+LTE+ F+WPG+G + I+ + I G+ + ++ +L D+
Sbjct: 265 MGLQFALLLGGAVLTETTFSWPGLGSYLVMKIRYRDFPAIQGTVVFFALIVVVISILVDV 324
Query: 337 AYGFLDPRVK 346
+DPRV+
Sbjct: 325 INALIDPRVR 334
>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 136 bits (338), Expect = 5e-31
Identities = 99/346 (28%), Positives = 161/346 (45%), Gaps = 25/346 (7%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
YL RL FIV + + L + D ++ +Q+ V PE Q
Sbjct: 7 YLIPRLLQYFIVTFLGLSAIFFLPRLLPTDPVKQQLQQYQTFGVYIPPEQQ--------- 57
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE--TSVRKIIAVA 123
EE + L + YGL+ W + +D K+ + DFG P F SV K+I+ A
Sbjct: 58 -EEMMRT----LRQLYGLEGTLWEQYLDFWKRLLTGDFG----PSFSRFPVSVSKVISQA 108
Query: 124 IPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILL 183
+P TV L + +++ + +++G + L V M+ IP + +I ++L
Sbjct: 109 LPWTVGLLSLTTILSWIIAVIVGGIVGYYRKRWME-ALDVVVMIIRPIPYYVMALICLIL 167
Query: 184 FSFKLNLLPSGGMTSIPPKTGFAYYT--DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGV 241
F++ + P G I K F T ++KH LP T++ V W + + +++ +
Sbjct: 168 FAYVFPIFPLSGGIGIGQKLSFDLETILSIVKHGTLPALTLMIVGIA-WQFQSMKLIVQI 226
Query: 242 LQ-EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGM 300
++ ED + A+ GV E ++ H +R A P+IT G GA++TE VF +PG+
Sbjct: 227 VKSEDHVWYAKTAGVTEKMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGI 286
Query: 301 GRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
G + + AI + + NLIMG IS +LL DL Y DPRV+
Sbjct: 287 GWILYDAIMKADYNLIMGVMCISTIAITTSILLLDLIYPLFDPRVR 332
>gi|10954943 Probable accD [Agrobacterium tumefaciens]
>gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
[Agrobacterium tumefaciens]
Length = 308
Score = 134 bits (335), Expect = 1e-30
Identities = 99/343 (28%), Positives = 169/343 (48%), Gaps = 43/343 (12%)
Query: 6 YLAYRLTNAFIVLLI-VTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
++ RL A IV+++ VTFV IL ++ D R+ + E + P
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL--RLGGDPARAMLGEN----------------ATPE 45
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
AL ++ A+GLDR + + + DFG + V +IA I
Sbjct: 46 ALAAFRT--------AWGLDRSIPEQFLIYLASALRGDFGVSAAD---GREVFTVIAERI 94
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P+T+ L +A ++ + +GI G+ AA + D+ + A++ S+P + G+ LI +F
Sbjct: 95 PKTLTLTISAFVLSILVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVF 154
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
+ +LPS G ++ +H ILP+ T V+ A R+ +I VL++
Sbjct: 155 AVWFRVLPSSGSST-------------WQHAILPVATFGLVNAAAIARFARSALIEVLEQ 201
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
+I AARA G+P+ +V+ HAL AA P++TM F G LGG+ + E+VF WPG+G +
Sbjct: 202 PYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGF 261
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
AI +LN++ + A + L+ D+ Y L+P++++
Sbjct: 262 VRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYAVLNPKIRL 304
>pir||G82301 peptide ABC transporter, permease protein VC0619 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655052|gb|AAF93785.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 328
Score = 134 bits (335), Expect = 1e-30
Identities = 85/271 (31%), Positives = 142/271 (52%), Gaps = 9/271 (3%)
Query: 83 LDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLG 142
++ P++V+ + K + + G S F SV +++ A ++ L TA +I +G
Sbjct: 60 VEGPWYVQYLTYIKSILTWELGT--SIKFYPLSVNELLGGAFGWSLFLAGTAVIISFSIG 117
Query: 143 IMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG-----GMT 197
+LG+ AA K G +D ++ +V ++P M+ + F+ L+ P+G G T
Sbjct: 118 SVLGIFAAWKRGSRYDTFITPGMLVIQAVPQVVIAMLAMFTFAIGLSWFPTGYAYTAGTT 177
Query: 198 SIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPE 257
P T +A+ DV H +LPL V GG+ RN MI +L ED+I A+ KG+ E
Sbjct: 178 --PDWTSWAFIKDVGYHAVLPLFCASIVQIGGFLVNMRNNMINLLAEDYITMAKGKGLSE 235
Query: 258 NKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIM 317
N+V++ +A R A P +T +L ++GG ++ E +FN+PG+G + + AI + ++
Sbjct: 236 NRVVFNYAARNALLPSVTALSMSLGMAIGGQLIIEIIFNYPGLGTVLFNAITARDYQVLQ 295
Query: 318 GSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
G I L LLAD+ Y LDPR++ G
Sbjct: 296 GQLLIMTLFMLFFNLLADMLYVVLDPRLRKG 326
>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|98272|pir||S16648 dipeptide transport system
permease protein dppB - Bacillus subtilis
>gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
[Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
dipeptide ABC transporter (permease) [Bacillus subtilis]
Length = 308
Score = 134 bits (335), Expect = 1e-30
Identities = 94/295 (31%), Positives = 143/295 (47%), Gaps = 18/295 (6%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKAY-GLDRPFWVRVIDRTKKTMMLDFG-DVRSPIFG 112
L K+ P E + L+AY LD P + I K + DFG ++ P
Sbjct: 26 LMKVIPGSPFNEERGTNEAVQKNLEAYYHLDDPLIFQYIFYLKSIITFDFGPSIKKP--- 82
Query: 113 ETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIP 172
SV ++ P + L TA +I + G++LG+ AA + G D A++ SIP
Sbjct: 83 SDSVNDMLERGFPVSFELGMTAIVIAVISGLVLGVIAALRRNGFLDYAAMSLAVLGISIP 142
Query: 173 MWWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAW 232
+ +LI F+ L L P+ TS HM+LP + A
Sbjct: 143 NFILATLLIQQFAVNLKLFPAATWTSPI-------------HMVLPTAALAVGPMAIIAR 189
Query: 233 VTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTE 292
+TR+ M+ VL +D+I A+AKG+ K+I HALR A P+IT+ + L G+ + E
Sbjct: 190 LTRSSMVEVLTQDYIRTAKAKGLSPFKIIVKHALRNALMPVITVLGTLVASILTGSFVIE 249
Query: 293 SVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+F PGMG+ + +I Q + +IMG+T + +I + L DLAYG LDPR+K+
Sbjct: 250 KIFAIPGMGKYFVESINQRDYPVIMGTTVFYSVILIIMLFLVDLAYGLLDPRIKL 304
>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 134 bits (333), Expect = 2e-30
Identities = 95/344 (27%), Positives = 165/344 (47%), Gaps = 18/344 (5%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
RYL RL F+V+ + +V L + D +++ I I +PE
Sbjct: 6 RYLLPRLITYFLVVFVGLTIVFFLPRFLPSDPIQAYIDRLITQGGNLNPE---------- 55
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+ + + + + YGL W + ++ K+ + DFG S T V K+I ++
Sbjct: 56 ----YFNKLVETIKELYGLQGSLWNQYVNFWKRLLKGDFGP--SYFQFPTPVMKLIRQSL 109
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T L ++I +G +LG A + + + L AMV +P + + L++L
Sbjct: 110 PWTAWLLFVTTVISWIIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILL 169
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYT--DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
++ + P GG +I K F++ +LKH LP ++V + W + ++ V
Sbjct: 170 AYIFPIFPIGGGFAIGMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVVQSVK 229
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
ED++ A+ GV E +++ + +R A P IT +L GGA++TE VF++PG+G
Sbjct: 230 TEDYVKYAKMGGVEERRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYPGIGS 289
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
L + AI + NL+MG + +S+ L +L+ DL Y DPRV+
Sbjct: 290 LLYNAIFTGDYNLLMGISTLSILLVTTSILVIDLLYPLFDPRVR 333
>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 314
Score = 134 bits (333), Expect = 2e-30
Identities = 95/343 (27%), Positives = 156/343 (44%), Gaps = 43/343 (12%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
Y+A R+ F V+ IV F + I+F +R S DP L ++ H
Sbjct: 4 YIAKRI---FAVIPIVLFAIFIMFV-----FIRLS---------PVDPAEAYLTAANIHP 46
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSVRKIIAV 122
EE + +GLD+P V+ + K LDFG P++ E + R
Sbjct: 47 TEELLAEKRHE----FGLDQPMAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTAR----- 97
Query: 123 AIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILIL 182
+P T+ L ++ + + + I LG +A L DR + + + SIP +W G +LI
Sbjct: 98 -MPATLQLAVSSIFLAVLISIPLGFLSAIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIF 156
Query: 183 LFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
FS KLNL P G S H++LP T+ + + R ++ +
Sbjct: 157 FFSVKLNLFPVEGRGS-------------WAHLVLPTVTLSLALIAIYTRLLRASVLEQM 203
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
QE +++ AR +G+ E ++ H L+ A P+IT + L G I+ E VF+WPG GR
Sbjct: 204 QESYVLYARTRGIKEKVIMVKHVLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGR 263
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
+ AI ++ +I ++ L+++ L+ DL +DPR+
Sbjct: 264 YFVDAIFNRDIPVIQCYVLLAACLFIVCNLIVDLVQLAMDPRI 306
>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
>gi|7449121|pir||A64902 peptide transport system
permease protein b1486 - Escherichia coli
>gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1787761|gb|AAC74559.1| (AE000245) putative transport
system permease protein [Escherichia coli K12]
Length = 340
Score = 133 bits (332), Expect = 3e-30
Identities = 93/290 (32%), Positives = 145/290 (49%), Gaps = 19/290 (6%)
Query: 75 DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTA 134
+ + + GLD+P +V+ + L GD+ + I V + + + P T+ L A
Sbjct: 51 ENIRQQLGLDQPLYVQFY---RYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGA 107
Query: 135 SLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
L+ + +GI LG+ +A D + + A+ S P +W G+ +I+LF L +LP G
Sbjct: 108 LLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGG 167
Query: 195 GMTSI---PPK--TGF-----------AYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIM 238
G PP TGF + + L+H+ILP T+ FV G A R+ M
Sbjct: 168 GRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAM 227
Query: 239 IGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWP 298
+ L ED+I ARA G+P ++ +AL A P IT+ L L GA+LTE+VF WP
Sbjct: 228 LEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWP 287
Query: 299 GMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
GMG +IQ ++ +MG + Y++ L+ DL Y ++DPR+ G
Sbjct: 288 GMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRIGRG 337
>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 345
Score = 132 bits (330), Expect = 5e-30
Identities = 80/259 (30%), Positives = 134/259 (50%), Gaps = 17/259 (6%)
Query: 104 GDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSV 163
GD+ I + V++ + P TV L A + + +G+ G+ AA + L+D +
Sbjct: 86 GDLDKSIITQIPVKEDLKTRFPATVELAFAALIFALLVGLPAGIIAALRRNSLWDNLATT 145
Query: 164 FAMVTTSIPMWWFGMILILLFSFKLNLLPS----GGMTSIPPKTGF-----------AYY 208
+++ S+P++W G++L F KL LP G + TG A
Sbjct: 146 ISLIGVSMPVFWLGLLLSYFFGVKLGWLPPSARLGTEFDLQSITGMNVLDGLLRGQPAAA 205
Query: 209 TDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRA 268
D KH++LP + + A +TR+ ++ VL +D++ ARAKG+ + HALR
Sbjct: 206 WDAAKHLVLPAIALGTIPLAIIARITRSSLLDVLGQDYVRTARAKGLSARNITLKHALRN 265
Query: 269 AAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGST-YISVALY 327
A PI+T+ + G LGGA+LTE++F+W G+G + AI + +I G +I++ +
Sbjct: 266 ALLPIVTVIGLQIGGLLGGAVLTETIFSWNGVGSWLYDAISARDFFVIQGGVIFIALVIS 325
Query: 328 LIGVLLADLAYGFLDPRVK 346
L+ LL DL+Y LDPR++
Sbjct: 326 LVN-LLVDLSYAALDPRIQ 343
>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 322
Score = 132 bits (329), Expect = 6e-30
Identities = 85/325 (26%), Positives = 156/325 (47%), Gaps = 9/325 (2%)
Query: 24 VVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHALEEWKKREYDRLLKAYGL 83
++ F + L S I I + DP L +S+P+ +E + +R YGL
Sbjct: 5 IIRRCFIMIPQLFLLSVIVFMIAQAMPGDP-LTGFYQSNPNISQEVIDAQRER----YGL 59
Query: 84 DRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGI 143
+ P++V+ + + DFGD V ++I I T+ L ++ + I
Sbjct: 60 NDPWYVQYVRWVGNALQGDFGDSYQQ---RIPVTEVIDNRIWNTIWLSLLTLIMTYMIAI 116
Query: 144 MLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPPKT 203
LGL + + L DR ++ + V + P++ ++++ LF F+L P+GG S +
Sbjct: 117 PLGLLSGRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQP 176
Query: 204 G-FAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIY 262
G F Y + HM+LP ++ ++ R+ +I Q D++ ARA+G E ++
Sbjct: 177 GTFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGASERRIYL 236
Query: 263 GHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYI 322
H R + PI + L G +GG I E +F++PGMG+L+ +I Q + +++ +
Sbjct: 237 KHLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVVTTMVLL 296
Query: 323 SVALYLIGVLLADLAYGFLDPRVKV 347
++G LL+D+ +DPR+K+
Sbjct: 297 FGVASILGALLSDIILSIVDPRIKI 321
>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
Length = 207
Score = 131 bits (325), Expect = 2e-29
Identities = 76/211 (36%), Positives = 119/211 (56%), Gaps = 5/211 (2%)
Query: 136 LIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGG 195
++ + +G+ G+ AA ++GG DR L+ F+ + S+P++ G ILI F+ + LP G
Sbjct: 1 ILSVTVGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQG 60
Query: 196 MTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGV 255
TSI G A + H+ILP T+ A +TR M+ VL ED++ A AKG
Sbjct: 61 YTSI--NQGVAPW---FLHLILPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGA 115
Query: 256 PENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNL 315
+++ HAL+ A PI+T+ + +GG +LTE+VFN PG+GRL AI+ + +
Sbjct: 116 SPFAMLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPI 175
Query: 316 IMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
I + LY++ LL DLAY +DPR++
Sbjct: 176 IQTVLVLISGLYVLINLLVDLAYTLIDPRIR 206
>pir||B71163 probable oligopeptide transport system permease protein AppB -
Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
(AP000002) 330aa long hypothetical oligopeptide
transport system permease protein AppB [Pyrococcus
horikoshii]
Length = 330
Score = 130 bits (324), Expect = 2e-29
Identities = 97/349 (27%), Positives = 164/349 (46%), Gaps = 28/349 (8%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSS-IQEQINMRVRTDPELQKLA 59
MG+G YL + I++ ++TF+ ++ + ++ IQ IN + P+ +
Sbjct: 1 MGFGDYLKRK-----IIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQER--- 52
Query: 60 KSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKI 119
E R Y++L YGL++P +V+ ++ + L GD+ I V ++
Sbjct: 53 --------ETLLRFYEQL---YGLNKPLYVQFVNFW---VALFKGDLGYSILYRAPVSRL 98
Query: 120 IAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMI 179
+ A+P + + A ++ +G LG A + +D+ + S+P +WF M+
Sbjct: 99 LKNALPYDIAILLPAIVLSWLIGNWLGAFAGKNKK--YDKYMMPLFYFLASMPYFWFAML 156
Query: 180 LILLFSFKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
L+ L K +LP G S + P + D LKH I+P ++ V G WA RN+
Sbjct: 157 LVYLVGVKAGILPYQGAYSPDLIPTFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNM 216
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
+I L+ D++ A G E K++ HA + A P IT L + GAI TE VFN+
Sbjct: 217 IIYELEADYVRYLEALGASE-KLMTKHAYKNAILPQITGLALQLGLMVAGAIATEIVFNY 275
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
PG+G L A + L+ G + V L+ + D+ Y +DPRV+
Sbjct: 276 PGVGVLLMKAAMSQDYFLLQGGFLMIVISVLVANFVIDIVYALIDPRVR 324
>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
Length = 341
Score = 130 bits (324), Expect = 2e-29
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 25/346 (7%)
Query: 3 YGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSD 62
Y RY+ RL + VL+I++ + IL + D + + + DPE K +
Sbjct: 19 YVRYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAML----------DPEKTKAMTPE 68
Query: 63 PHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAV 122
AL + + K G D+ R T +FG I V + I
Sbjct: 69 ERALY------IENMRKFLGYDKGPVERYFLWMGDTFRGEFG---YSIKYNKPVNEFIGT 119
Query: 123 AIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILIL 182
I R+ + L+ + I +G+ AA K FD+ ++V +V S+P ++ ++LI+
Sbjct: 120 YIKRSFRINIWGFLLAFLISIPVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIM 179
Query: 183 LFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
+F + +LP GM+ P+ + ++ILP+T +V S G R+ MI +L
Sbjct: 180 VFVIFMQILPFSGMSD--PRGILPDW----HYIILPVTVVVLTSLVGLIRYVRSAMIEIL 233
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
+ D+I ARAKG+ E VIY HA + A P++T+ + G GG+I+ E +F +PGMG
Sbjct: 234 KSDYIRTARAKGLSEKVVIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGL 293
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
L A + ++ L L+G + D+ Y +DPR++ G
Sbjct: 294 LMNYAYGFKDRAVLQTVLLFFGLLTLLGNIFIDVGYMVVDPRIREG 339
>pir||T35939 probable transport permease protein - Streptomyces coelicolor
>gi|4158198|emb|CAA22761.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 130 bits (323), Expect = 3e-29
Identities = 80/276 (28%), Positives = 138/276 (49%), Gaps = 11/276 (3%)
Query: 75 DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSVRKIIAVAIPRTVMLF 131
DRL + G+D F R + D G +R P V ++I + + +L
Sbjct: 64 DRLRENLGVDESFVARWWHWLTSALTGDLGHSSVLRQP------VTQVIGERLVWSALLC 117
Query: 132 TTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLL 191
A + + LG++LG+ AA++ G + DR ++ + + P++W ++ + LF+ + ++L
Sbjct: 118 AVAFAVAVGLGLLLGVLAARRPGSVLDRAVTSLSYTLEAAPVFWIALLAVWLFALQWDVL 177
Query: 192 PSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAAR 251
P+GG+T + V H++LP + + R + L ED + AR
Sbjct: 178 PAGGLTDTASQQ--VTPGQVAGHIVLPAGVLAVSQLPWFTLYVRQGVGDALAEDPVRGAR 235
Query: 252 AKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQM 311
A+G+ E V+ GHALR+ P++T+ + + GA+L E+VF+WPG+ A +
Sbjct: 236 ARGLAEGTVLVGHALRSGLLPVLTLIGSRVPELITGALLVETVFSWPGIAAATVEAATAV 295
Query: 312 ELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+ L+ T ++ L G LLADL YG DPRVK+
Sbjct: 296 DFPLLAALTVLATVAVLAGNLLADLLYGLFDPRVKL 331
>pir||D71014 probable dipeptide transport system permease protein dppB -
Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
(AP000006) 332aa long hypothetical dipeptide transport
system permease protein dppB [Pyrococcus horikoshii]
Length = 332
Score = 129 bits (322), Expect = 4e-29
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 21/294 (7%)
Query: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRS--PIFGETSVRKIIAVAI 124
E+ ++ + + K Y LDRP++ + + K + D R+ PI + R
Sbjct: 45 EKATQQAIELIKKMYHLDRPWYDQYVFLIKGLIANTIIDPRTSNPIMYDVGKR------F 98
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ L A + ++ +GI LG+ +A K D + +FA++ S P +W G ++I +F
Sbjct: 99 PVTLQLAIIAFIFILIIGIPLGIISALKRNTWVDTVVRIFALLGVSTPAFWLGYLMIYIF 158
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVL---------KHMI---LPLTTIVFVSFGGWAW 232
K + G+ +P + D L +H+ LP T+ F+ G A
Sbjct: 159 FVKYKVTTIAGVPPMPKPITYVPMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTAR 218
Query: 233 VTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTE 292
RN + L D+++ +AKGVP+ +V Y HAL+ A PI+T+ G LGG +TE
Sbjct: 219 FVRNSFLEALSSDYVLFLKAKGVPKMRV-YRHALKNALVPIVTVLGLQFGGLLGGTPITE 277
Query: 293 SVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+VF PGMG +IQ ++ +++ T+I +Y+ L+ D+ Y +DPRV+
Sbjct: 278 TVFGLPGMGSYAVQSIQNLDFPVVIAITFIYAIIYVTINLIVDVLYAIIDPRVR 331
>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
>gi|7442425|pir||G70771 probable peptidetransport system
permease - Mycobacterium tuberculosis (strain H37RV)
>gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
tuberculosis]
Length = 325
Score = 129 bits (321), Expect = 5e-29
Identities = 102/350 (29%), Positives = 161/350 (45%), Gaps = 35/350 (10%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
RYLA RL N ++L + +F+ L T +A L S +Q + P
Sbjct: 3 RYLARRLLNYLVLLALASFLTYCL-TSLAFSPLESLMQR---------------SPRPPQ 46
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
A+ + K + GLDRP R + + DFG + T + + I V++
Sbjct: 47 AVIDAKAHDL-------GLDRPILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSL 99
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILIL-- 182
L S+ G+++G A + L DR ++ A++ S P + +LIL
Sbjct: 100 ----RLLVVGSVFGTVAGVVIGAWGAIRQYRLSDRVMTTLALLVLSTPTFVVANLLILGA 155
Query: 183 ---LFSFKLNLLPSGGMTSIPPKTGFAY--YTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
++ + L G TS P G + D L+H+ILP T+ + G++ RN
Sbjct: 156 LRVNWAVGIQLFDYTGETS-PGVAGGVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNA 214
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
M+ VL +DFI ARAKG+ + + H LR A P+ T+ + + G + GA+ E +F W
Sbjct: 215 MLDVLGQDFIRTARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGW 274
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
GMG I + N++ T S A+ L+ LL+D+ Y LDPRV+V
Sbjct: 275 HGMGEWMVRGISTQDTNIVAAITVFSGAVVLLAGLLSDVIYAALDPRVRV 324
>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|11279742|pir||T44636 dipeptide transport protein
dppB [imported] - Bacillus firmus
>gi|1813496|gb|AAB41689.1| (U64514) dipeptide
transporter protein dppB [Bacillus firmus]
Length = 333
Score = 129 bits (321), Expect = 5e-29
Identities = 85/302 (28%), Positives = 149/302 (49%), Gaps = 26/302 (8%)
Query: 60 KSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKI 119
++ P A+ + ++R GL+ P+WV+ K L GD+ + + + +
Sbjct: 42 QASPQAIADLEER--------LGLNEPYWVQYGLYMKD---LATGDLGTSLRTNKPIMEE 90
Query: 120 IAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMI 179
I + T+ L A + + +G+ G+ +A K FD A+V S+P++W ++
Sbjct: 91 IWPYLAATIELTIFAMIFAIIIGVNAGIVSAWKQNSWFDYLSMFIALVGVSMPIFWLALM 150
Query: 180 LILLFSFKLNLLPSGGMTS----IPPKTGFAYYTDVL-----------KHMILPLTTIVF 224
+F+ +L LP+ G + I TG + ++ KH+ILP +
Sbjct: 151 EQWIFAQELGWLPAFGRDNPRDPIISTTGLYVFDTIISGQFDKTWESIKHLILPGIALGT 210
Query: 225 VSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGS 284
+ A +TR+ M+ VL+ D+I AKG + VIY HAL+ A P++T+
Sbjct: 211 IPMAIIARMTRSSMLEVLRSDYIRTVNAKGSGQGVVIYKHALKNALIPVLTVVGLQTGNL 270
Query: 285 LGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPR 344
LGGAILTE++F+WPG+GR + AI + +I + ++++ L DL Y ++DPR
Sbjct: 271 LGGAILTETIFSWPGIGRYIFEAINYRDYPVIQSGILVVATIFVLINLFVDLLYSYIDPR 330
Query: 345 VK 346
+K
Sbjct: 331 IK 332
>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
Pyrococcus abyssi (strain Orsay)
>gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 332
Score = 129 bits (321), Expect = 5e-29
Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
E+ K + + K Y LD P++ + + K + D R+ V I P
Sbjct: 45 EKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRT----SNPVMTDIGKRFPV 100
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
T L A ++ +GI LG+ +A K D + +FA++ S P +W G +++ +F
Sbjct: 101 TFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFV 160
Query: 187 KLNLLPSGGMTSIPP------------KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVT 234
K L G+ P + F + L LP T+ F+ G A
Sbjct: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220
Query: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294
RN + L D++ +AKGVP+ + IY HAL+ A PI+T+ G LGG +TE+V
Sbjct: 221 RNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETV 279
Query: 295 FNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
F PGMG AIQ ++ +++ T+I +Y+ L+ D+ Y +DPRV+
Sbjct: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 315
Score = 128 bits (319), Expect = 9e-29
Identities = 99/344 (28%), Positives = 166/344 (47%), Gaps = 37/344 (10%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
R RL + +L VTFV S LF ++A DP L L +
Sbjct: 3 RIFIRRLLEVALFVLFVTFV-SFLFVRLAPG----------------DPVLTILNVDELS 45
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+E E + L + G ++P V+ + LDFG S + G+ V +I +
Sbjct: 46 VSQE----EVETLREDMGFNKPLLVQYGHWLLDFVRLDFGV--SYVTGQP-VMDMIMKGL 98
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ L + ++++ + I LG AA D + A++ +IP +W G+I I LF
Sbjct: 99 PATLELTVGSLIVMLIVSIPLGSLAALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLF 158
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
+ +LN LP+ G + GF +ILP T+ + + R+ ++ L +
Sbjct: 159 AVRLNWLPTMG------RDGFV-------SLILPSVTLGLAISSVYVRLLRSSLLDSLSQ 205
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
+FI AARA+G+ E ++ HALR + PP+IT+ +L +GG ++ E +F +PG+G+L
Sbjct: 206 EFIRAARARGLSEKRIFVAHALRHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLV 265
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
AI+Q + LI G + + + DL+Y +L+P +K+G
Sbjct: 266 VDAIRQRDYPLIQGYILVMALIVFVINTSVDLSYRYLNPEMKLG 309
>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 333
Score = 127 bits (317), Expect = 2e-28
Identities = 85/284 (29%), Positives = 142/284 (49%), Gaps = 10/284 (3%)
Query: 70 KKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVM 129
K +RL + +GLD+P +V+ + K +M D GD + V ++I +++
Sbjct: 51 KPETIERLRREFGLDQPVFVQYLYWFKNLLMGDLGD---SFQYKRPVAEVIQGPFLNSLI 107
Query: 130 LFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILIL-LFSFKL 188
L ++++ + I +G+ +A K +DR + F+ + IP ++FG++ I + K
Sbjct: 108 LVVISTVLHFAVSIPVGVYSALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAMLQLKQ 167
Query: 189 NL---LPSGGMTSIPPKTGFA---YYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
LP GG +S T + + DV H ++P +V G + R M+ VL
Sbjct: 168 QFGWDLPLGGKSSSALPTDISPLRHVWDVFLHALIPSIILVLRGISGESRFIRGQMLEVL 227
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
+D+I ARAKG+ + V Y HA + A P I L +GGA E VFNWPG+
Sbjct: 228 GQDYIRTARAKGLNDRAVTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTP 287
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
L A+ ++ ++M T + LY+IG LL+DL +DPR++
Sbjct: 288 LQLTALGNQDIYILMAVTALGTLLYMIGNLLSDLLLAAVDPRIR 331
>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
[Agrobacterium tumefaciens]
Length = 306
Score = 127 bits (316), Expect = 2e-28
Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 45/343 (13%)
Query: 6 YLAYRLTNAFIVLLI-VTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
++ RL A IV+++ VTFV IL ++ D R+ + E + P
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL--RLGGDPARAMLGEN----------------ATPE 45
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
AL ++ A+GLDR + + + DFG + V +I+ I
Sbjct: 46 ALAAFRT--------AWGLDRSIPEQFLIYLASALRGDFGVSAAD---GREVFTVISERI 94
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P+T+ L +A ++ + +GI G+ AA + D+ + A++ S+P + G+ LI +F
Sbjct: 95 PKTLTLTISAFVLSILVGIPAGIIAAVRRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVF 154
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
+ +LPS G ++ +H ILP+ T V+ A R +I VL++
Sbjct: 155 AVWFRVLPSSGSST-------------WQHAILPVATFGLVNAAAIALPFR--VIEVLEQ 199
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
+I AARA G+P+ +V+ HAL AA P++TM F G LGG+ + E+VF WPG+G +
Sbjct: 200 PYIAAARADGIPKWEVVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGF 259
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
AI +LN++ + A + L+ D+ Y L+P++++
Sbjct: 260 VRAITLSDLNVVQAMILLFTAFMVTINLIVDVLYAVLNPKIRL 302
>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1074012|pir||G64188 transmembrane protein dppB -
Haemophilus influenzae (strain Rd KW20)
>gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
dipeptide ABC transporter, permease protein (dppB)
[Haemophilus influenzae Rd]
Length = 333
Score = 126 bits (313), Expect = 4e-28
Identities = 86/291 (29%), Positives = 141/291 (47%), Gaps = 25/291 (8%)
Query: 74 YDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSVRKIIAVAIPRTVML 130
+ +++ GLD P + + + DFG + P+ E P T L
Sbjct: 49 HQQMMHQLGLDLPLYQQYFHYIGNVIQGDFGASFRTQQPVLTE------FFTLFPATAEL 102
Query: 131 FTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNL 190
A + GI+LG AA K ++ ++ S+P++W+G+ILIL S +L L
Sbjct: 103 AFFALFWSLLGGIILGTIAAVKKDSWISHTVTAASLTGYSMPIFWWGLILILYVSPQLGL 162
Query: 191 LPSGGMTS----IPPKTGFAY-----------YTDVLKHMILPLTTIVFVSFGGWAWVTR 235
P GG I TGF + + +K +ILP + V +TR
Sbjct: 163 -PQGGRLDNEFWIDTPTGFMLIDSWLSGVSGAFENAVKSLILPAIVLGTVPLAIITRMTR 221
Query: 236 NIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVF 295
+ M+ VL ED+I A+AKG+ +++ HALR A P++T+ + L GA+LTE++F
Sbjct: 222 SAMLEVLGEDYIRTAKAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIF 281
Query: 296 NWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+WPG+G+ AIQ + ++ GS I + ++ L DL YG ++PR++
Sbjct: 282 SWPGIGKWIIDAIQARDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIR 332
>pir||B72617 probable dipeptide transport system permease protein APE1395 -
Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
(AP000061) 336aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 336
Score = 126 bits (313), Expect = 4e-28
Identities = 98/355 (27%), Positives = 161/355 (44%), Gaps = 42/355 (11%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
R+L RL L+ VTFV ++ T V + + + K+ P
Sbjct: 10 RFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGE---------------KASPE 54
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+E+ +++ Y LDRPFW + K + + SP+ V +I +
Sbjct: 55 VVEQ--------IVREYRLDRPFWEQYFFFMYKLLT---NTMISPVTSNY-VWDMIVERL 102
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ L A + ++ LGI LG+ +A + D + + A+V S+P++W +LI +F
Sbjct: 103 PVTIQLTLLAFVFIILLGIPLGIISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVF 162
Query: 185 SFKLNLLPSGGMTSIPPK--TGF-----------AYYTDVLKHMILPLTTIVFVSFGGWA 231
K L+ G T PP TG A + DVL+ +P T+ + S G A
Sbjct: 163 YTKYRLITLAG-TPEPPYSITGIPLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVA 221
Query: 232 WVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILT 291
+ RN + + D++ A+G+P Y H LR ++ PI+T+ G L GA +T
Sbjct: 222 RLVRNSFLDAMSGDYVEFMDARGLPSTWK-YRHILRNSSIPIVTVLGLIFGGLLTGAPIT 280
Query: 292 ESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
E++F PG+G+ +I + +MG +YL LL D+ Y +DPRV+
Sbjct: 281 ETIFGLPGLGKFLLDSINNYDYLSLMGGVLFVGIIYLTVNLLVDITYAIIDPRVR 335
>pir||F72451 probable peptide transport system permease protein APE2258 -
Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
(AP000064) 339aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 339
Score = 126 bits (313), Expect = 4e-28
Identities = 88/289 (30%), Positives = 146/289 (50%), Gaps = 19/289 (6%)
Query: 73 EYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFT 132
E + + + GLD+P W + ID M DFG+ + ++G R I+ P T+ L
Sbjct: 54 ELEAIRERLGLDQPLWRQYIDYLLGVMRGDFGESMT-LYGRPVARDIME-RFPATLELTI 111
Query: 133 TASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLP 192
++ + LG+ G+ AA + GGL DR L ++V ++ + W G++L +FS KL +LP
Sbjct: 112 FGFIVSVVLGVGSGVVAAFR-GGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILP 170
Query: 193 SGGM----TSIPPKTGF-----------AYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
+GG ++ TG A ++H+ILP T+ V G + + R
Sbjct: 171 TGGRIDPRVNLDVVTGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIH 230
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
+ L+ + +A RA+G+ E+++ H LR + P ITM LGGA+LTE+ F+W
Sbjct: 231 VAEALRSEVAVAYRARGLRESRIAV-HMLRISLIPTITMMGLQFAILLGGAVLTEATFSW 289
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
PG+G L I + + I G T + + L+ D+ Y ++PRV+
Sbjct: 290 PGLGSLLVERISYRDYSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVR 338
>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
Pyrococcus abyssi (strain Orsay)
>gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
abyssi]
Length = 334
Score = 126 bits (313), Expect = 4e-28
Identities = 86/288 (29%), Positives = 140/288 (47%), Gaps = 7/288 (2%)
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
L E K + ++A+GLD+P W + I K + D G S + V +I+ A+P
Sbjct: 49 LPEATKYLHSYFVQAFGLDKPLWEQYISFWKAVLHGDLGI--SIYYYPKPVAEILKEALP 106
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
+ L A + F+G LG A K L + + +F + S P +WF ++L LF+
Sbjct: 107 YDLALLFPALVASWFVGNWLGALAG-KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFT 164
Query: 186 FKLNLLPSGGMTS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243
FKL P G S I P + + D L H LP ++ V GGWA RN++I ++
Sbjct: 165 FKLGWFPISGAYSYGIIPSLSWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIE 224
Query: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303
D+I + GV E K++ HA + A P +T L + G + + VF++PG+G +
Sbjct: 225 ADYIRYLESLGVSE-KILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYV 283
Query: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351
I + LI G+ + + L+ + DL Y +DPRV++ ++
Sbjct: 284 LMQGIMNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVRISYTE 331
>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 333
Score = 126 bits (313), Expect = 4e-28
Identities = 89/306 (29%), Positives = 150/306 (48%), Gaps = 34/306 (11%)
Query: 60 KSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGD---VRSPIFGETSV 116
++ P A+ E ++R GL+ P+ V+ + + DFG R+PI E
Sbjct: 42 QASPQAVAELEER--------LGLNEPYLVQYGYYVRDLLTGDFGTSLRTRAPISEE--- 90
Query: 117 RKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWF 176
I + T+ L A L + +G+ G+ +A K FD + A++ S+P++W
Sbjct: 91 ---IVPYLGATLELTFFAMLFAVVVGVNAGIISAWKQHSFFDYACMLVALLGVSMPIFWL 147
Query: 177 GMILILLFSFKLNLLPSGGMTS----IPPKTGFAYYTDV------------LKHMILPLT 220
++ +F+ +L P+ G + I TG Y D LKH++LP
Sbjct: 148 ALMQQWIFAQELGWFPAFGRDNPRDPIQSITGL-YVLDAILHWRWDHVHVALKHLVLPAI 206
Query: 221 TIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFT 280
+ + A +TR+ M+ VL+ D+I AKG + VIY HAL+ A P++T+
Sbjct: 207 ALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSSQFVVIYKHALKNAMIPVLTVAGLQ 266
Query: 281 LLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGF 340
LGGAILTE++F+WPG+GR + AI + +I + ++++ L+ DL Y +
Sbjct: 267 TGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVIQSGILVVAIMFVVINLIVDLLYSY 326
Query: 341 LDPRVK 346
+DPR+K
Sbjct: 327 IDPRIK 332
>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
sp. NRC-1]
Length = 347
Score = 125 bits (312), Expect = 6e-28
Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 29/317 (9%)
Query: 58 LAKSDPHAL---EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGET 114
LA DP + + +++ +L + GL+ P +V+ DFG S G T
Sbjct: 31 LASGDPARVILGQRAPQQQVIQLRQELGLNDPVYVQYARFLVDAAQFDFGQSYSVAQG-T 89
Query: 115 SVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMW 174
+VR ++A IP T+ L I + LGI LG+ +A + L D + A+ S+P++
Sbjct: 90 AVRSVLADKIPVTLELALYGQAIGILLGIPLGVISAVEQDTLTDHFGRIGALSGISVPIY 149
Query: 175 WFGMILILLFSFKLNLLPSGGMTSIP--------------PKTGF-----------AYYT 209
W G +LIL FS L + P+ G P TG + +
Sbjct: 150 WSGPLLILAFSTFLGVFPASGRIESTIFLADSWSLFGVTLPLTGMLTVDTLLLGNVSAWV 209
Query: 210 DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAA 269
+ H+ILP TI S + + R+ M+ V+++D++ ARAKG I H R A
Sbjct: 210 SAVMHLILPAATIGIYSMALISRMMRSSMLEVVRQDYMRTARAKGQGSKITIMKHGFRNA 269
Query: 270 APPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLI 329
P+IT+ LGGA+LTE+VF G+G + AI + L+ G+ L+ +
Sbjct: 270 LVPVITVIGIQFGSLLGGAVLTETVFGIEGIGTILVSAINANDYPLVQGTVLTFALLFTL 329
Query: 330 GVLLADLAYGFLDPRVK 346
LL D+ Y +LDPR++
Sbjct: 330 VNLLVDVTYSYLDPRIQ 346
>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1074011|pir||E64184 oligopeptide transport system
permease protein oppB - Haemophilus influenzae (strain
Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
oligopeptide ABC transporter, permease protein (oppB)
[Haemophilus influenzae Rd]
Length = 306
Score = 125 bits (310), Expect = 1e-27
Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 14/293 (4%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L +LA P E E ++A Y L+ P + + + DFG S + +
Sbjct: 26 LMRLAPGSPFTSERAYPPEVMANIEAKYHLNEPLYKQYFLYLENLSKGDFGP--SFKYKD 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV +IA A P ++ L A + LG+ G AA +D L F+M+ +P
Sbjct: 84 QSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTLAALNQNSRWDYILMSFSMLGVIMPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ F +L+L+F+ L LP+GG G A Y MILP+ ++ G A +
Sbjct: 144 FVFAPVLVLIFAIYLGWLPAGGWNG-----GTAMY------MILPVASLTIAYVAGIARI 192
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
R MI VL +FI A+AKG+ +++I HALR A P+IT +G + G+++ ES
Sbjct: 193 MRGSMIEVLHSNFIRTAKAKGLSMSRIILKHALRPALLPVITYLGPAFVGIITGSMVIES 252
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
VF PGMG L+ + +L++ T + L ++ + D+ Y +DP+++
Sbjct: 253 VFGLPGMGLLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDILYAIIDPKIR 305
>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|72438|pir||QREBOB oligopeptide transport system
permease protein oppB - Salmonella typhimurium
>gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
[Salmonella typhimurium]
Length = 306
Score = 123 bits (306), Expect = 3e-27
Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 14/293 (4%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
+ +LA P E E ++A Y L+ P + K+ DFG S + +
Sbjct: 26 MMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP--SFKYKD 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
+V ++A + P + L A L+ + +G+ G+ AA K +D + FAM IP
Sbjct: 84 YTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L+++F+ L LP GG LK MILP+ + A +
Sbjct: 144 FVVAPLLVMVFAITLQWLPGGGWNG-----------GALKFMILPMVALSLAYIASIARI 192
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
TR MI VL +FI ARAKG+P ++I+ HAL+ A P+++ +G + G+++ E+
Sbjct: 193 TRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAFVGIITGSMVIET 252
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
++ PG+G+L+ + +L++ T + AL ++ + D+ Y +DP+++
Sbjct: 253 IYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442405|pir||H69668 oligopeptide transport system
permease protein oppB - Bacillus subtilis
>gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
transporter (permease) [Bacillus subtilis]
Length = 311
Score = 123 bits (305), Expect = 4e-27
Identities = 88/299 (29%), Positives = 144/299 (47%), Gaps = 16/299 (5%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L + A P + E+ E + L A YGLD+P +V+ + K M DFG S +
Sbjct: 26 LMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGP--SFKYKG 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV +I+ P + L A L+ + LG++ G+ AA D +++ + S+P
Sbjct: 84 QSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L +FS KL L P G S +AY LP + + A +
Sbjct: 144 FIMAAVLQYVFSMKLGLFPVAGWDS------WAY-------TFLPSIALASMPMAFIARL 190
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
+R+ MI VL D+I A+AKG+ V HA+R A P++T L G+ + E+
Sbjct: 191 SRSSMIEVLNSDYIRTAKAKGLSRPAVTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIET 250
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQR 352
+F PG+G + +I + +IMG T + L+ VL+ D+ YG +DPR+K+ +++
Sbjct: 251 IFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKK 309
>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
ABC transporter, permease protein, putative [Deinococcus
radiodurans]
Length = 340
Score = 122 bits (304), Expect = 5e-27
Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 23/307 (7%)
Query: 60 KSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKI 119
++ P+ + + ++++ GL PF V+ + D G R+ V
Sbjct: 35 RAAPYIRGDNQAARIEQIIDQRGLRDPFPVQYGRWAASAVQGDLGFSRA---SGKDVIDT 91
Query: 120 IAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMI 179
I +P T+ L ++ ++ L + LG +A D+ L V ++ S+P + G++
Sbjct: 92 IKERLPNTIELTLLTAIPILLLSVWLGSLSALNKDKFIDQVLRVLTILGYSLPTFVLGIV 151
Query: 180 LILLFSFKLNLLPSGGMTSIPPK---TGFAYYT-----------------DVLKHMILPL 219
L+ +F L LP G + + + YT DV++HMILP
Sbjct: 152 LLAIFYAYLGWLPGAGQLEVVNQFAVSDMKRYTGMLTVDALLNGRWSVAWDVVRHMILPA 211
Query: 220 TTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIF 279
TT+ VS V RN M+ VL D+I ARAKG+ V HA R A P+IT+
Sbjct: 212 TTLAIVSSADIIKVMRNSMLDVLSSDYIRTARAKGLTPGVVNRKHARRNALLPVITLGGL 271
Query: 280 TLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYG 339
++ L G+++TE++F +PG+G+ + Q++L ++G +S + ++ L D+ YG
Sbjct: 272 LIINLLSGSLITETIFAYPGIGQWVVQSALQIDLAGVLGFALLSALIVVVMNTLVDILYG 331
Query: 340 FLDPRVK 346
+DPRV+
Sbjct: 332 IVDPRVR 338
>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
anthropi]
Length = 313
Score = 122 bits (302), Expect = 9e-27
Identities = 95/341 (27%), Positives = 160/341 (46%), Gaps = 35/341 (10%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
RY+ RL +A V+L VT V + V D +R + +I D E+ +
Sbjct: 5 RYVISRLLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIG-----DDEVAAI------ 53
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
Y +L G+DRP V+ D + + G++ + I + V ++ +
Sbjct: 54 ---------YHQL----GMDRPLLVQYFDFVRHALT---GNLGTSIVQKAPVTDLVLEKL 97
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
T++L ++LI + + I LGL A+ D + + + + ++P +W G++LILLF
Sbjct: 98 WPTLLLLAFSTLISVLIAIPLGLVASFYRNRWPDHAIRLVSSIGFAMPSYWIGLLLILLF 157
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
L P G+ + ++L H+ LP TI R+ M+ VL
Sbjct: 158 GLWLGWFPISGIGQ--------GHLEILHHLFLPALTISLFLGPVLIQSLRSSMLDVLTS 209
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
++I ARAKGV E +++ H +R A P+IT+ + L GA++ E VF PG+G L
Sbjct: 210 EYIEVARAKGVSEWRILTKHVMRNALIPVITVLAINISWLLSGAVIVEYVFGLPGLGSLL 269
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
++ + LI G + + L ++ LLADL+Y +D RV
Sbjct: 270 VRSVGYRDYPLIQGLSLVFGVLVVVINLLADLSYMLVDRRV 310
>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
>gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
subtilis]
Length = 311
Score = 121 bits (301), Expect = 1e-26
Identities = 87/299 (29%), Positives = 144/299 (48%), Gaps = 16/299 (5%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L + A P + E+ E + L A YGLD+P +V+ + K M DFG S +
Sbjct: 26 LMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGP--SFKYKG 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV +I+ P + L A L+ + LG++ G+ AA D +++ + S+P
Sbjct: 84 QSVNDLISSGFPVSFTLGAEAILLALGLGVLFGVIAALYHNKWQDYTVAILTIFGISVPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L +FS KL L P G S +AY LP + + A +
Sbjct: 144 FIMAAVLQYVFSMKLGLFPVAGWDS------WAY-------TFLPSIALASMPMAFIARL 190
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
+R+ MI VL D+I A+AKG+ + HA+R A P++T L G+ + E+
Sbjct: 191 SRSSMIEVLNSDYIRTAKAKGLSRPALTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIET 250
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQR 352
+F PG+G + +I + +IMG T + L+ VL+ D+ YG +DPR+K+ +++
Sbjct: 251 IFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKK 309
>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
[Agrobacterium tumefaciens]
Length = 313
Score = 121 bits (301), Expect = 1e-26
Identities = 98/342 (28%), Positives = 166/342 (47%), Gaps = 35/342 (10%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
YLA RL A + LL V ++ ++ + D + + +Q + P +
Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILGDQ----------------ASPES 47
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
+ ++R GLD+P ++ + + D G+ S + G ++++V +P
Sbjct: 48 VAALRQR--------LGLDQPIGLQYVQFLGSAVKGDLGN--SMVTGRPVTEEVMSV-LP 96
Query: 126 RTVMLFTTASLIV-MFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
T+ L T ASL+V + LG+ G+ AA K L D L + +++ S+P + ++L+++F
Sbjct: 97 YTLEL-TFASLVVGLILGVPTGVWAAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVF 155
Query: 185 SFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
+ L P I TG V + M LP+ ++ + VTR+ M+ VL +
Sbjct: 156 AINLRWFPV-----ISAGTGDGIVNRVWQ-MTLPVISLALIMMAYITRVTRSAMLEVLNQ 209
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
DF+ ARAKG + VI+ HAL PI T+ L +G ++LTE VF+ PG+G+L
Sbjct: 210 DFVRTARAKGARPSVVIWRHALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLI 269
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
A+ Q + L+ G + + +I L DL YG DPRV+
Sbjct: 270 LTALSQRDYTLLQGMVVVYTLIVVIVNLATDLTYGLFDPRVQ 311
>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
pyogenes]
Length = 325
Score = 121 bits (301), Expect = 1e-26
Identities = 77/275 (28%), Positives = 137/275 (49%), Gaps = 5/275 (1%)
Query: 73 EYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFT 132
+Y + YGLD+P V+ K + GD+ + + V II + +L
Sbjct: 52 QYKAIAHHYGLDKPALVQYFIWLKNVIQ---GDLGTSLVYRQPVSDIIRSRAGASFILMG 108
Query: 133 TASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLP 192
+ ++ +G +LG +A G L DR + F+ + S+P +W G+I +L+FS +L P
Sbjct: 109 LSWILSGLIGFILGTLSAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFP 168
Query: 193 SGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARA 252
G + I + D +KH++LP+ T+ + TR M+ VL ++++ ARA
Sbjct: 169 IGISSPIGTLSQDITLADRVKHLMLPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARA 228
Query: 253 KGVPENKVIYGHALRAAAPPIITMTIFTLLGSL-GGAILTESVFNWPGMGRLYWVAIQQM 311
+G + ++ H LR A P IT+ F+ G L GG++L E VF++PG+G A +
Sbjct: 229 RGETQWQIFKHHCLRNAIVPAITLH-FSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKS 287
Query: 312 ELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ L++ I G L+AD+ ++P+++
Sbjct: 288 DTPLLLAIVMIGTLFVFAGNLIADILNSIINPQLR 322
>dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]
Length = 320
Score = 121 bits (301), Expect = 1e-26
Identities = 79/264 (29%), Positives = 125/264 (46%), Gaps = 22/264 (8%)
Query: 101 LDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRG 160
LDFG ++ ++ +AV P T+ L A L+ + +GI LG A K G D
Sbjct: 54 LDFGISKNG----NAIYDELAVVFPATLELCFFAFLVSLLIGIPLGTVAGMKQGKWLDTS 109
Query: 161 LSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGG----MTSIPPKTGFAYYT------- 209
+S +M S P++W ++LI++FS + L P G + I TGFA
Sbjct: 110 ISFMSMSGYSAPIFWVALLLIMVFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGE 169
Query: 210 -------DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIY 262
V++HM+LP + + R+ + V+ +++I AAR KG+ +++
Sbjct: 170 YRAHALQSVIEHMVLPCLVLALAPTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVT 229
Query: 263 GHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYI 322
H LR A PPII L + AI+TES+FNWPG+GR A+ + I +
Sbjct: 230 QHVLRNAIPPIIPKVGVQLSSMITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMV 289
Query: 323 SVALYLIGVLLADLAYGFLDPRVK 346
L L +L+DL ++P V+
Sbjct: 290 LATLVLTANILSDLIGAMINPLVR 313
>pir||H83388 probable permease of ABC transporter PA2059 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948067|gb|AAG05447.1|AE004632_6 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 357
Score = 120 bits (299), Expect = 2e-26
Identities = 84/283 (29%), Positives = 136/283 (47%), Gaps = 26/283 (9%)
Query: 77 LLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASL 136
L + YG D+P R+ LDFG+ + + V +IA +P ++ L A+L
Sbjct: 80 LERQYGFDKPPLQRLWLMLSSYARLDFGE---SFYRDARVIDLIAEKLPVSLSLGLWATL 136
Query: 137 IVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS-------FKLN 189
I + I LG+ A + G FD S ++ ++P + F ++LI+LF+ F L
Sbjct: 137 ITYLVSIPLGVAKAVRHGSAFDLWSSALVVIGYAVPGFLFAIVLIVLFAGGSYLDWFPLR 196
Query: 190 LLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMA 249
L S G + P FA D L H+ LP+ ++V F +T+N + + ++
Sbjct: 197 GLASEGAERLGPLARFA---DYLWHLALPVGSLVVGGFASLTLLTKNSFLDEISRQYVAT 253
Query: 250 ARAKGVPENKVIYGHALR-------AAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
ARAKG+ E +V+YGH R A P + FT G++L E +F+ G+G
Sbjct: 254 ARAKGLSERRVLYGHVFRNAMLLVVAGLPAALVSVFFT------GSLLIEVLFSLDGLGL 307
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
+ + A + ++ GS +I L L+ L DLAY +DPR+
Sbjct: 308 MGYEAALGRDYPVVFGSLFIFTLLGLLVKLAGDLAYSLVDPRI 350
>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
related protein [Thermoplasma acidophilum]
Length = 340
Score = 120 bits (298), Expect = 3e-26
Identities = 78/233 (33%), Positives = 117/233 (49%), Gaps = 3/233 (1%)
Query: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
V I+A A+P T+ L ++ I FLG LG A D + VFAM S P +
Sbjct: 105 VSAILAEALPWTLFLVISSITISFFLGNRLGRYAGINRNTSKDLAIDVFAMFMASFPAFV 164
Query: 176 FGMILILLFSFKLNLLPSGGMTSIPPKTGF--AYYTDVLKHMILPLTTIVFVSFGGWAWV 233
I++ +FS ++ P GG + GF + V+ H +LP+ TI+ S GGW
Sbjct: 165 LAFIVLDIFSVYGHIFPLGGAYGVNVNMGFNVPFIISVIYHAVLPVLTIILTSLGGWVLG 224
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
RN +I L DFI + G + + I A + A P +T ++ S+ G I+ ES
Sbjct: 225 MRNNIIPNLNSDFINYSENLGFKDYQ-IKSIAYKNALLPNLTGFAMSIGLSVSGVIIEES 283
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+F++PG+G AI ++ L+ G + V L G L+ DL YGFLDPR++
Sbjct: 284 IFSYPGVGLYMITAINSLDYPLMQGIFLMVVIAVLAGNLVVDLLYGFLDPRIR 336
>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442404|pir||B36263 oligopeptide transport system
permease protein oppB - Escherichia coli
>gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
transport permease protein [Escherichia coli K12]
Length = 306
Score = 120 bits (297), Expect = 3e-26
Identities = 80/293 (27%), Positives = 141/293 (47%), Gaps = 14/293 (4%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
+ +LA P E E ++A Y L+ P + K+ DFG S + +
Sbjct: 26 MMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP--SFKYKD 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV ++A + P + L A + + LG+ G+ AA K +D + AM IP
Sbjct: 84 YSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L+++F+ L+ LP GG LK MILP+ + A +
Sbjct: 144 FVVAPLLVMIFAIILHWLPGGGWNG-----------GALKFMILPMVALSLAYIASIARI 192
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
TR MI VL +FI ARAKG+P ++I HAL+ A P+++ +G + G+++ E+
Sbjct: 193 TRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIET 252
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
++ PG+G+L+ + +L++ T + AL ++ + D+ Y +DP+++
Sbjct: 253 IYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 341
Score = 120 bits (297), Expect = 3e-26
Identities = 94/351 (26%), Positives = 153/351 (42%), Gaps = 36/351 (10%)
Query: 1 MGYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRT--DPELQKL 58
M + ++L RL I +++V + +L + RV T DP Q
Sbjct: 22 MRFLKFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQAT 81
Query: 59 AKSDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETS--V 116
K EE YGL+ P W +++ K ++ FG P F + + +
Sbjct: 82 LKG----FEE-----------RYGLNNPLWKQILMYLKGAVVFKFG----PSFSDPARNI 122
Query: 117 RKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWF 176
+I P T L ++ L + +G+ LG+ AA K D +++ +IP +
Sbjct: 123 EDLIKEKFPITFTLALSSILFALVVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVV 182
Query: 177 GMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRN 236
+ LIL+FS L LP+ G I K ILP + A TR
Sbjct: 183 AVFLILIFSIYLGWLPTSGWEGIRTK-------------ILPTIALALGPLASVARFTRV 229
Query: 237 IMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFN 296
++ L +DFI A AKG + VI HALR + P++T+ + + G + E++F
Sbjct: 230 SLLDTLNQDFIRTAYAKGGDDRTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFR 289
Query: 297 WPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
PG+G+L+ A + L++ ST+I +I L+ D+ Y LDPR+K+
Sbjct: 290 IPGLGQLFANAAVTRDYPLLVTSTFILALTVMIMNLIVDVLYAILDPRIKL 340
>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 119 bits (295), Expect = 6e-26
Identities = 77/290 (26%), Positives = 139/290 (47%), Gaps = 17/290 (5%)
Query: 61 SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFG---DVRSPIFGETSVR 117
+DPH E + L +A GL P+W + + + + G +++ P+ R
Sbjct: 43 TDPH--------EVEALRRAAGLYDPWWEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHR 94
Query: 118 KIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFG 177
I T + + ++ I + + AA+ G D+ + +T IP + F
Sbjct: 95 AI------NTFWMSLLSVILTYLFAIPMSIVAARNEGKWQDQLWLTYNSITFGIPPYVFY 148
Query: 178 MILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
+++I +F + LN P+GG S + + HMILP ++ G R+
Sbjct: 149 LLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSG 208
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
++ +D++ ARAKGV E + H LR A+ PI + F + G LGGAI E++F +
Sbjct: 209 ILDEQTQDYVRTARAKGVKEKVIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGY 268
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
PG+G+L+ +I + ++I ++ L L+G LL+D+ +DPR+++
Sbjct: 269 PGLGQLFITSISGRDYSMITALILLNGFLGLLGALLSDIIMAMVDPRIRI 318
>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
(AF000366) oligopeptide permease homolog B [Borrelia
burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
oligopeptide ABC transporter, permease protein (oppB-1)
[Borrelia burgdorferi]
Length = 306
Score = 119 bits (295), Expect = 6e-26
Identities = 75/270 (27%), Positives = 136/270 (49%), Gaps = 11/270 (4%)
Query: 76 RLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTAS 135
RL++ Y LD+PF+++ + D G + +V + I + P+++ L +
Sbjct: 48 RLMEKYHLDKPFYIQAFYYITNALRGDLGPSLKK--KDLTVSQYIKLGFPKSLTLGVISL 105
Query: 136 LIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGG 195
+I + +GI +G+ AA D ++ A++ SIP++ G IL F+ K LL + G
Sbjct: 106 IISLSIGIPIGILAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSG 165
Query: 196 MTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGV 255
I + GF+ ++ILP+ T+ + +A + R M+ ++Q DFI ARAKG+
Sbjct: 166 W--ITERGGFS-------NLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGL 216
Query: 256 PENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNL 315
K++ H LR A P+++ + G+++ E +F GMG + + +
Sbjct: 217 SFKKIVIKHMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPV 276
Query: 316 IMGSTYISVALYLIGVLLADLAYGFLDPRV 345
+MG + + LI +L++D+ Y LDPRV
Sbjct: 277 LMGGLLVYSIILLISILISDIIYKILDPRV 306
>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 306
Score = 119 bits (295), Expect = 6e-26
Identities = 79/293 (26%), Positives = 147/293 (49%), Gaps = 14/293 (4%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L + A +P + E E + A YGLD+P + + + DFG S + +
Sbjct: 26 LMRYAPGNPFSSERPLPPEVMANINAKYGLDKPVSEQYLTYLTNIVQGDFGP--SFKYKD 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
+V ++IA A+P +V + A + + +G+ +G AA K D + AM+ +P
Sbjct: 84 YTVNELIASALPVSVKIGLAAFVFTVIMGVTVGTIAALKQNTWIDYTIMSTAMLGVVMPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +LI +F+ + +L P+GG GF Y M LP+ + + +A +
Sbjct: 144 FVLAPVLIYIFAIQFSLFPAGGWQD----GGFEY-------MALPVLGMSLLYVATFARI 192
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
TR MI L +FI ARAKG+ ++ HAL+ A P+++ +G + G+++ E+
Sbjct: 193 TRGSMIETLNSNFIRTARAKGLSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIET 252
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+F PG+G+L+ A + +L+MG T + L+++ + D+ ++DP+++
Sbjct: 253 IFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDILLAYIDPKIR 305
>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 342
Score = 118 bits (294), Expect = 7e-26
Identities = 83/281 (29%), Positives = 138/281 (48%), Gaps = 10/281 (3%)
Query: 71 KREYDRLLKAYGL---DRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRT 127
++E L++ GL +P +++ + K+ + L+FG + SV II A P T
Sbjct: 56 QQEIQILVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEF--PVSVSTIITEAAPWT 113
Query: 128 VMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFK 187
+ A + F+G +LG AA G + D + M + P++ G ILI + +
Sbjct: 114 FGIVIPAIVASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAID 173
Query: 188 LNLLPSGGMTS----IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243
L++ P+GG + + P + V+ H ILP T++ S GW RN MI +LQ
Sbjct: 174 LHIFPTGGQYNTFQFLKPTMSLPFIWSVIYHAILPTLTLILFSLAGWIMGMRNNMIPILQ 233
Query: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303
ED++ R GV E K++ A R A P T +L S+ GA+ E +FN+ G+G
Sbjct: 234 EDYMNYYRLMGVSE-KMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLGYF 292
Query: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPR 344
+ AI ++ L+ G ++ V ++ +AD+ Y +DPR
Sbjct: 293 FNQAITGLDYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPR 333
>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 329
Score = 118 bits (294), Expect = 7e-26
Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 7/274 (2%)
Query: 79 KAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIV 138
+A+GLD+P W + I+ K D G S V K+IA A+P ++++ A L+
Sbjct: 58 QAFGLDKPLWEQYINFWKALFRGDLGI--SIYMYPQPVAKVIARALPYSLIVLLPAVLLS 115
Query: 139 MFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTS 198
+G G A+K L + L VF +T S P +WFG++L +F + L P G S
Sbjct: 116 FAIGNRFGAFVARKKR-LDNFALPVFYTLTAS-PYFWFGILLAWIFGVVIPLFPLAGAYS 173
Query: 199 --IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVP 256
I P + + D L H +LP ++ V GGWA RN++I L+ ++ A G
Sbjct: 174 FGITPSFSWDFILDFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLEALGSS 233
Query: 257 ENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLI 316
+ ++I +A R A P IT L + GA+ TE VF++PG+G + I + LI
Sbjct: 234 Q-RLIRKYAYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQDYFLI 292
Query: 317 MGSTYISVALYLIGVLLADLAYGFLDPRVKVGVS 350
G + L+ L D+ Y +DPR++ S
Sbjct: 293 QGCFLFIILGVLLANFLVDIFYVIIDPRIRKSYS 326
>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 342
Score = 118 bits (294), Expect = 7e-26
Identities = 90/349 (25%), Positives = 168/349 (47%), Gaps = 31/349 (8%)
Query: 2 GYGRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKS 61
G +L RL A IV+ +++ V + D L ++E + Q ++++
Sbjct: 17 GMFSFLVKRLYQALIVMFVISLVAFAI-----QDNLGDPLRELVG---------QSVSEA 62
Query: 62 DPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIA 121
+ AL + GL+ PF +I ++ GD+ + F + ++I
Sbjct: 63 ERQALRD-----------ELGLNDPF---IIKYSRFVTAAVQGDLGTSYFFKRPALEVIF 108
Query: 122 VAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILI 181
+ T+ L A+LI++ I LG+ +A LF + + + + SIP++ ++L+
Sbjct: 109 DKLVATLELVFGATLIIIVFSIPLGVYSAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLM 168
Query: 182 LLFSFKLNLLPSGGMTSIPPKTGF--AYYT-DVLKHMILPLTTIVFVSFGGWAWVTRNIM 238
+FS +L PS G G+ ++T D L+H++LP + + + + R+ M
Sbjct: 169 YVFSIELGWXPSYGRGETVNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEM 228
Query: 239 IGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWP 298
+ VL ++I A+AKG+P NK+ Y HAL+ P++T+ + + ILTE+VF WP
Sbjct: 229 LEVLSSEYIKFAQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWP 288
Query: 299 GMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
G G L+ AI +++ LI ++++ + DL YG ++P V +
Sbjct: 289 GTGFLFLEAINRVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTVNL 337
>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 311
Score = 117 bits (291), Expect = 2e-25
Identities = 80/268 (29%), Positives = 135/268 (49%), Gaps = 17/268 (6%)
Query: 81 YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMF 140
YG + P ++ + + M +FG S I G+ V + I A T+ L +S++VM
Sbjct: 59 YGFNDPLLIQYKNWLLEAMQFNFGT--SYITGDP-VAERIGPAFMNTLKLTIISSVMVMI 115
Query: 141 LGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIP 200
I+LG+ +A K G DR + A T++P +W ILI+ S KLN+LP+ G+T
Sbjct: 116 TSIILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTG-- 173
Query: 201 PKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKV 260
P++ ILP+ I G + R M+ L ED+++ RA GV ++
Sbjct: 174 PES-----------YILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGV-KSIT 221
Query: 261 IYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGST 320
+ H LR A +++ ++ +GG ++ E +F WPG+G+L AI + + +I
Sbjct: 222 LMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYV 281
Query: 321 YISVALYLIGVLLADLAYGFLDPRVKVG 348
I L+++ LAD+ L+PR++ G
Sbjct: 282 LIVAVLFIVFNTLADIINALLNPRLREG 309
>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 314
Score = 117 bits (291), Expect = 2e-25
Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 13/295 (4%)
Query: 55 LQKLAKSDPHAL---EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIF 111
L L DP + E ++ + + + GL+ P V+ + + GD+ +
Sbjct: 26 LLHLVPGDPAIMIAGESAPQQTVENIRERLGLNDPVPVQYFNYVSGVIQ---GDLGTSFR 82
Query: 112 GETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSI 171
V IA T+ L + ++ +FLG++ G+ +A K D L + A+ S+
Sbjct: 83 SGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSATKRYSFADTSLMIIALFGLSM 142
Query: 172 PMWWFGMILILLFSFKLN-LLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGW 230
P +W G++LI F+ LP P G + ++LP+ T+
Sbjct: 143 PNFWLGLMLIQWFAIGYTPWLPFDTAWFAPSGWGS------FRQIVLPVITLGTAGAAIV 196
Query: 231 AWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAIL 290
A +TR+ M+ VL +D+I ARAKGV E V+Y HAL+ A P++T+ LGG++L
Sbjct: 197 ARMTRSSMLEVLHQDYIRTARAKGVKERVVVYRHALKNALIPVVTVVGIQFGFLLGGSVL 256
Query: 291 TESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
TE VF G+GRL AI+Q + ++ G+ + L++ LL D+ Y FL+ R+
Sbjct: 257 TEQVFAINGLGRLIIEAIRQRDFPVVQGAVLVISVLFVFVNLLVDITYRFLNKRI 311
>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
[Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
Oligopeptide transport system permease protein OppB.
[Escherichia coli]
Length = 306
Score = 117 bits (290), Expect = 2e-25
Identities = 79/293 (26%), Positives = 140/293 (46%), Gaps = 14/293 (4%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
+ +LA P E E ++A Y L+ P + K+ DF S + +
Sbjct: 26 MMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFDP--SFKYKD 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV ++A + P + L A + + LG+ G+ AA K +D + AM IP
Sbjct: 84 YSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L+++F+ L+ LP GG LK MILP+ + A +
Sbjct: 144 FVVAPLLVMIFAIILHWLPGGGWNG-----------GALKFMILPMVALSLAYIASIARI 192
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
TR MI VL +FI ARAKG+P ++I HAL+ A P+++ +G + G+++ E+
Sbjct: 193 TRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIET 252
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
++ PG+G+L+ + +L++ T + AL ++ + D+ Y +DP+++
Sbjct: 253 IYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
>pir||F72720 probable oligopeptide transport system permease protein oppB
APE0303 - Aeropyrum pernix (strain K1)
>gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
hypothetical oligopeptide transport system permease
protein oppB [Aeropyrum pernix]
Length = 342
Score = 117 bits (290), Expect = 2e-25
Identities = 79/311 (25%), Positives = 146/311 (46%), Gaps = 29/311 (9%)
Query: 62 DPHAL---EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRK 118
DP A+ + + R+ + Y D P +V+ I K + GD+ + V +
Sbjct: 33 DPAAIYIHPDMTPEDVQRVRELYHFDDPLYVQYIYWLKGVLQ---GDLGYSVTANMPVTE 89
Query: 119 IIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGM 178
I +P T+ L A + + +G+ LG KAA L D + A+ S+P++W +
Sbjct: 90 AIKSFLPATLELALYAFTLSIIVGVYLGTKAAANKDKLIDHLTRLLALSGYSMPVFWLAL 149
Query: 179 ILILLFSFKLNLLPSGGMTS------IPPKTGFAYYT-----------------DVLKHM 215
+L+ LF L+ + G ++ +PP F +YT D +KH+
Sbjct: 150 MLLYLFYNVLDFVGPGRLSLEVRFKYMPPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHL 209
Query: 216 ILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIIT 275
I P+ T ++ + V R+ MI + ++++ A +KG+ V+ + R + ++
Sbjct: 210 IPPVLTQTYIHIAIFIRVLRSSMIEEMNKEYVDFALSKGLRREVVLKDYVRRNSYISLVN 269
Query: 276 MTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLAD 335
+ +G + G +LTE+VFNWPG+GR A Q++ ++G T L+++ L D
Sbjct: 270 VAGLQFVGLMSGVVLTETVFNWPGLGRFAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVD 329
Query: 336 LAYGFLDPRVK 346
+ +LDPR++
Sbjct: 330 ILLAYLDPRIR 340
>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
>gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
transport system permease protein OppB. [Escherichia
coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
transport system permease protein [Escherichia coli K12]
Length = 364
Score = 116 bits (289), Expect = 3e-25
Identities = 77/273 (28%), Positives = 136/273 (49%), Gaps = 14/273 (5%)
Query: 81 YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMF 140
YG D+P R + DFGD +F SV +I ++P ++ L ++LI+
Sbjct: 93 YGFDKPIHERYFKMLWDYIRFDFGD---SLFRSASVLTLIKDSLPVSITLGLWSTLIIYL 149
Query: 141 LGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS-------FKLNLLPS 193
+ I LG++ A G FD S F ++ +IP + F ++LI+ F+ F L L S
Sbjct: 150 VSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVS 209
Query: 194 GGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAK 253
S+P + TD L H+ LP+ V F +T+N + +++ +++ ARAK
Sbjct: 210 ANFDSLP---WYQKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAK 266
Query: 254 GVPENKVIYGHALRAAAPPIITMTIFTLLGS-LGGAILTESVFNWPGMGRLYWVAIQQME 312
GV E +++ H R A +I T + G++L E +F+ G+G L + A +
Sbjct: 267 GVSEKNILWKHVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRD 326
Query: 313 LNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
++ G+ YI + L+ +++D++Y +DPR+
Sbjct: 327 YPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1075747|pir||C53290 oligopeptide transport protein
oppB - Lactococcus lactis subsp. lactis
>gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 116 bits (287), Expect = 5e-25
Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 17/290 (5%)
Query: 61 SDPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFG---DVRSPIFGETSVR 117
+DPH E + L +A GL P+W + + + + G +++ P+ R
Sbjct: 43 TDPH--------EVEALRRAAGLYDPWWEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHR 94
Query: 118 KIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFG 177
I T + + ++ I + + AA+ G D+ + +T IP + F
Sbjct: 95 AI------NTFWMSLLSVILTYLFAIPMSIVAARNEGKWQDQLWLTYNSITFGIPPYVFY 148
Query: 178 MILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNI 237
+++I +F + LN P+GG S + + HMILP ++ G R+
Sbjct: 149 LLIIFIFGYSLNWFPTGGTVSPDAMGIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSG 208
Query: 238 MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNW 297
++ +D++ ARAKGV E + H LR A+ PI + F + G LGGAI E++F +
Sbjct: 209 ILDEQTQDYVRTARAKGVKEKVIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGY 268
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
PG+G+L+ +I + ++I ++ L+G LL D+ +DPR+++
Sbjct: 269 PGLGQLFITSISGRDYSMITALILLNGFSGLLGALLPDIIMAMVDPRIRI 318
>pir||B70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
(AL022121) dppB [Mycobacterium tuberculosis]
Length = 308
Score = 116 bits (287), Expect = 5e-25
Identities = 81/275 (29%), Positives = 131/275 (47%), Gaps = 19/275 (6%)
Query: 76 RLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTAS 135
+L Y LD PF V+ + + D G S + V ++A A P T+ L A
Sbjct: 51 QLRSHYHLDDPFLVQYLRYLGGILHGDLGRAYSGL----PVSAVLAHAFPVTIRLALIAL 106
Query: 136 LIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPS-- 193
+ LGI G+ A + GG+FD + V +V +IP++ G + LF +L + P
Sbjct: 107 AVEAVLGIGFGVIAGLRQGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIAPVTV 166
Query: 194 GGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAK 253
G S+ ++LP + +SF +TR+ + D++ A AK
Sbjct: 167 GERASVG-------------RLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAK 213
Query: 254 GVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMEL 313
G+ +V+ H LR + P++T L +GGAI+TE +FN G+G + + A+ + E
Sbjct: 214 GLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQET 273
Query: 314 NLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
++ + V +YLI LL DL Y LDPR++ G
Sbjct: 274 PTVVSIVTVLVLIYLITNLLVDLLYAALDPRIRYG 308
>pir||D71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328914|gb|AAC68079.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 492
Score = 115 bits (285), Expect = 9e-25
Identities = 90/325 (27%), Positives = 160/325 (48%), Gaps = 21/325 (6%)
Query: 42 QEQINMRV-RTDPELQKLAKSDP-----HALEEWKKREYDR-LLKAYGLDRPFWV--RVI 92
Q + N +V +++ EL +L D AL+EW ++E R L L R F++ R
Sbjct: 165 QREYNQKVSKSNAELVRLLNEDNIEVKVAALQEWVEQEGGRGQLMRRDLWRIFFLETRFA 224
Query: 93 DRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQK 152
+ + LDFG +R+ +T V ++I + +++L ++V L + G+ A
Sbjct: 225 KYLSRIVRLDFGTLRNDCH-KTVVSEVIK-RLGSSLILSLLPMIVVFILCQVFGMIMAVN 282
Query: 153 AGGLFDRGLSVFAMVTTSIPMW----WF--GMILILLFSFKLNLLPSGGMTSIPP----K 202
D L+ ++ SIP++ W +L F +P G+ S P
Sbjct: 283 KNHWIDHLLNFLFLILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEIFKEM 342
Query: 203 TGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIY 262
T F TD++ H LP + + +F + ++R + + VL ED I A RA+G+ + ++
Sbjct: 343 TSFEKLTDIVLHSFLPFCAVSYGAFAAQSRLSRAVFLEVLGEDHISALRARGISQYDILV 402
Query: 263 GHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYI 322
H + +A +IT +L LGGA++ E++F+ G G+ ++ AI + N++M S +
Sbjct: 403 RHVGKNSAATLITSLASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVIM 462
Query: 323 SVALYLIGVLLADLAYGFLDPRVKV 347
+ LIG L+ D+ Y LDPRV++
Sbjct: 463 GSVISLIGYLIGDICYVLLDPRVQL 487
>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 310
Score = 115 bits (285), Expect = 9e-25
Identities = 90/341 (26%), Positives = 149/341 (43%), Gaps = 37/341 (10%)
Query: 4 GRYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDP 63
G Y+ RL + +L I++F+ + IN+ E+ A+ P
Sbjct: 2 GSYVMKRLFSVIPLLFIISFLTFVF----------------INLSPLDPAEVVLQAQGVP 45
Query: 64 HALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVA 123
+E + L GLD+PF ++ + LDFG + V II A
Sbjct: 46 TITDELIAQTKQEL----GLDQPFLIQYFHWLLACLQLDFGH---SYVTKEPVSAIIGPA 98
Query: 124 IPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILL 183
T+ L +S++++ L I+LG+ A K G D+ + F+ + IP + +I
Sbjct: 99 FFNTLKLTLVSSIVIIVLSILLGVICAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWY 158
Query: 184 FSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243
FS KL+LLP+ G+ D + ILP+T I G + RN M+ L
Sbjct: 159 FSVKLDLLPTSGL-------------DSYQSYILPVTVITASYVGIYFRSVRNSMLSHLN 205
Query: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303
EDF++ RA G+ E KV H LR + I++ + LGG ++ E+VF WPG+G L
Sbjct: 206 EDFVLYGRACGISEKKVTI-HILRNSLQVAISIFCMGIPTILGGTVVVENVFAWPGLGSL 264
Query: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPR 344
+I + +I I ++ +D+ ++P+
Sbjct: 265 SVKSILNRDFPIIQAYVLILAVSFVFFNTFSDIINAAMNPK 305
>pir||F83419 probable permease of ABC transporter PA1809 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 360
Score = 115 bits (284), Expect = 1e-24
Identities = 77/272 (28%), Positives = 137/272 (50%), Gaps = 8/272 (2%)
Query: 79 KAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIV 138
+ YG D+ R + K + LDFG F + V +I +P ++ L ++LI+
Sbjct: 86 RMYGFDKSAPERFMIMLKNYLHLDFGQ---SFFRDAKVTDLIIEKLPVSISLGLWSTLIM 142
Query: 139 MFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS--FKLNLLPSGGM 196
+ I LG+ A + G +FD S +V +IP + F ++L++LF+ + P G+
Sbjct: 143 YLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAILLVVLFAGGSYWDWFPLRGL 202
Query: 197 TS--IPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
TS + D H+ LP+T +V +F +T+N + + + +++ ARAKG
Sbjct: 203 TSNNFDQLSLGGKVLDYFWHLALPVTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKG 262
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLG-SLGGAILTESVFNWPGMGRLYWVAIQQMEL 313
+ E +V+YGH R A +I LLG G++L E +F+ G+G L + A +
Sbjct: 263 LTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNRDY 322
Query: 314 NLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
++ G+ +I L+ L++D+ Y +DPR+
Sbjct: 323 PVVFGTLFIFTLFGLVMKLISDIVYTLVDPRI 354
>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 307
Score = 114 bits (282), Expect = 2e-24
Identities = 78/272 (28%), Positives = 132/272 (47%), Gaps = 17/272 (6%)
Query: 76 RLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTAS 135
+L +GLD+P W + DFG F V +++ A P T+ L A
Sbjct: 50 QLRHEFGLDQPVWQQYATYMGNVFTGDFGTA----FNGQPVTELMGTAFPVTIRLTIVAI 105
Query: 136 LIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGG 195
L + +GI+LG+ + G D G+ + +V S+P + G++L LL K +
Sbjct: 106 LFEIVVGIILGVLTGLRRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGWIDP-- 163
Query: 196 MTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGV 255
++ + F +I+P + VS +TR + + D++ A AKG+
Sbjct: 164 --AVSSEAAFG-------ELIVPGLVLASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGL 214
Query: 256 PENKVIYGHALRAAAPPIITMTIFTLLGSL-GGAILTESVFNWPGMGRLYWVAIQQMELN 314
P ++VI H LR + P++T I T +G+L GGAI+TE +FN G+G + I +
Sbjct: 215 PRHRVITRHLLRNSLIPVVTF-IGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQ 273
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
++G + V ++L+ L+ DL Y LDPR++
Sbjct: 274 TVVGFVTVLVLVFLVANLVVDLLYAVLDPRIR 305
>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
acidophilum]
Length = 331
Score = 114 bits (282), Expect = 2e-24
Identities = 71/238 (29%), Positives = 123/238 (50%), Gaps = 8/238 (3%)
Query: 115 SVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMW 174
SV +I A+P T++LF +A++I +GI LG+ + K G + G+ + + SIP +
Sbjct: 97 SVIFVIKQALPYTLLLFGSAAVISFAIGIPLGIYTSFKRGKKSESGIITASTLLNSIPFF 156
Query: 175 WFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTD-----VLKHMILPLTTIVFVSFGG 229
F +I + + L++ P + SI P + + T +L ++ +P+ +V V G
Sbjct: 157 VFAIIFFVYLAGDLHIFP---LRSIFPISYIVHPTLKSIELILYYLAMPIIVLVIVEAAG 213
Query: 230 WAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAI 289
R M+ VL EDFI ARAKGV E +++ HA R A P+ T + GA+
Sbjct: 214 HLLTMRAAMVSVLGEDFITTARAKGVSERGIMFHHAARNAMIPVSTRMALEFAFLMSGAV 273
Query: 290 LTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+ E +F+ GMG + + A Q + + G+ ++ + ++ D + +LDPR+KV
Sbjct: 274 IVEVIFSIHGMGTVLYDATLQEDYPVSEGALFVISIIVILAYSAIDFIHAWLDPRIKV 331
>pir||E82442 probable peptide ABC transporter, permease protein VCA0590
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658001|gb|AAF96492.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 360
Score = 113 bits (279), Expect = 4e-24
Identities = 83/297 (27%), Positives = 141/297 (46%), Gaps = 32/297 (10%)
Query: 62 DPHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIA 121
DP +EE +R +G D+P R K +FG+ +F V +I
Sbjct: 78 DPQVVEEITRR--------FGFDKPIHERYFQMLKDYATFNFGE---SLFRGGDVIDLIV 126
Query: 122 VAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILI 181
+P ++ L ++L++ + I LG+ A G FD S ++ +IP + F +ILI
Sbjct: 127 ERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAIILI 186
Query: 182 LLFS-------FKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVT 234
+LF+ F L L S S+P + D H+ LP +V F + +T
Sbjct: 187 ILFASGNYFSWFPLRGLVSDNFASLP---WYQQVLDYFWHLTLPTLAMVIGGFATLSMLT 243
Query: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIIT------MTIFTLLGSLGGA 288
+N + + + +++ ARAKG+ E +++Y H R A II ++IF G+
Sbjct: 244 KNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSAFISIF-----FTGS 298
Query: 289 ILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
+L E +F+ G+G L + A Q + L+ S YI L L+ +++DL Y ++DPR+
Sbjct: 299 MLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYMWVDPRI 355
>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
NRC-1]
Length = 326
Score = 113 bits (279), Expect = 4e-24
Identities = 74/267 (27%), Positives = 131/267 (48%), Gaps = 5/267 (1%)
Query: 83 LDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLG 142
LD+P R ++ L++G S SV I+ A P T ++ LG
Sbjct: 62 LDKPITERYVNYVTNMATLNWGWSESR---SQSVMAAISEAWPYTAQYAIPVLVVSTILG 118
Query: 143 IMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPPK 202
LGL +A K D S SIP +WF ++LI+L + + + IP
Sbjct: 119 YGLGLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLGTHFEFISTYYQSGIPIN 178
Query: 203 TGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIY 262
G+A ++ + +++P ++ S +R I + ++F+ A+AKG + +++
Sbjct: 179 QGWASMANITQ-LLIPSFVLLTASLAWQMRYSRAQAIEQMNQEFVKVAKAKGASQWRLMI 237
Query: 263 GHALRAAAPPIITMTIFTLLGSL-GGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
H R AA P+ T + +LL G+++ E +F+ PG+G + + AI + + L++ +T
Sbjct: 238 HHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMTFTAITEQDTTLVLATTM 297
Query: 322 ISVALYLIGVLLADLAYGFLDPRVKVG 348
I+V L +IG L+ D++Y LDPR+ G
Sbjct: 298 ITVFLAIIGNLIEDVSYTILDPRIDYG 324
>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
>gi|7442416|pir||G64820 probable oligopeptide transport
protein b0831 - Escherichia coli
>gi|1787053|gb|AAC73918.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
protein o314 [Escherichia coli]
>gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
protein o314 [Escherichia coli]
Length = 306
Score = 109 bits (271), Expect = 4e-23
Identities = 79/265 (29%), Positives = 122/265 (45%), Gaps = 16/265 (6%)
Query: 82 GLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFL 141
GLD+P + + + DFG + V IA T+ L T+ + +
Sbjct: 56 GLDQPLYHQFWHYISNAVQGDFG---LSMVSRRPVADEIASRFMPTLWLTITSMVWAVIF 112
Query: 142 GIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPP 201
G+ G+ AA DR A+ S P + GM+LI +FS +L LP+ G
Sbjct: 113 GMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVG------ 166
Query: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
D +H ILP T+ A TR + VL ED++ ARAKGV E V+
Sbjct: 167 -------ADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVV 219
Query: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
H LR A P++TM LGG+I+ E VFNWPG+GRL +++ + +I
Sbjct: 220 LKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEIL 279
Query: 322 ISVALYLIGVLLADLAYGFLDPRVK 346
+ +++ L+ D+ Y ++P ++
Sbjct: 280 LFSLEFILINLVVDVLYAAINPAIR 304
>emb|CAA68074.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 381
Score = 109 bits (270), Expect = 5e-23
Identities = 86/358 (24%), Positives = 163/358 (45%), Gaps = 28/358 (7%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
+Y+ R+ A + L I++ V +L ++ + Q Q Q KS
Sbjct: 3 KYILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQF----------QASKKSGLT 52
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMML-----DFGDVRSPIFGE-----T 114
E K E + L+ Y + V +I R M DFG + +P T
Sbjct: 53 YTEILHKLEIENGLR-YKDNPDVLVPIIVRYGNYMKNIFTKGDFGFLYNPANNPNSALYT 111
Query: 115 SVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMW 174
++ K+ + ++++ I LGI +G+ A K G FD +VF ++ +IP +
Sbjct: 112 NMAKLFFTPLQYSLIITVPTFFISSILGIAIGVIAGYKRGKWFDVSSNVFVLIFVAIPSF 171
Query: 175 WFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVT 234
I+I + S L G++S+ P+ G + + + P+ + S G+ T
Sbjct: 172 ILAPIVITI-SVAL------GISSVVPRPGEQSFGVMFVSYLPPIFVMSITSLAGYVTYT 224
Query: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294
RN +I VL +F++ A+ KG+ +++ + + LR + P+ ++ + +G L G+I+ E
Sbjct: 225 RNQVITVLTSNFVLIAKTKGLSSSQIFFKYVLRNISIPLFSLVFGSFIGLLSGSIIIEQY 284
Query: 295 FNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQR 352
+ PG ++ A E+N++M ST + LI ++ D++Y LDP++K + +
Sbjct: 285 WQVPGTSQIIVNAFPTGEINVVMFSTLFFTFISLIADIIIDVSYAILDPKIKYSTNSK 342
>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 300
Score = 108 bits (268), Expect = 8e-23
Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 16/299 (5%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L + A P + E+ E + L A YGLD+P +V+ + K M DFG S +
Sbjct: 15 LMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGP--SFKYKG 72
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV +I+ P + L A L+ + LG++ G+ AA D +++ + S+P
Sbjct: 73 QSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPS 132
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L +FS KL L P G S +AY LP + + A +
Sbjct: 133 FIMAAVLQYVFSMKLGLFPVAGWDS------WAY-------TFLPSIALASMPMAFIARL 179
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
+R+ MI VL D+I A+AKG+ ++ G ++ + L G+ + E+
Sbjct: 180 SRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILGPMAAQVLTGSFIIET 239
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQR 352
+F PG+G + +I + +IMG T + L+ VL+ D+ YG +DPR+K+ +++
Sbjct: 240 IFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKK 298
>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 311
Score = 108 bits (268), Expect = 8e-23
Identities = 82/299 (27%), Positives = 140/299 (46%), Gaps = 16/299 (5%)
Query: 55 LQKLAKSDPHALEEWKKREYDRLLKA-YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L + A P + E+ E + L A YGLD+P +V+ + K M DFG S +
Sbjct: 26 LMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKSVAMWDFGP--SFKYKG 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
SV +I+ P + L A L+ + LG++ G+ AA D +++ + S+P
Sbjct: 84 QSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTVAILTIFGISVPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ +L +FS KL L P G S +AY LP + + A +
Sbjct: 144 FIMAAVLQYVFSMKLGLFPVAGWDS------WAY-------TFLPSIALASMPMAFIARL 190
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
+R+ MI VL D+I A+AKG+ ++ G ++ + L G+ + E+
Sbjct: 191 SRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETHFCRLLHILGPMAAQVLTGSFIIET 250
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQR 352
+F PG+G + +I + +IMG T + L+ VL+ D+ YG +DPR+K+ +++
Sbjct: 251 IFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLLCVLIVDVLYGIIDPRIKLSKAKK 309
>pir||T35980 probable peptide transport system permease - Streptomyces
coelicolor (fragment) >gi|4464265|emb|CAB37468.1|
(AL035559) putative peptide transport system permease
[Streptomyces coelicolor A3(2)]
Length = 147
Score = 108 bits (268), Expect = 8e-23
Identities = 54/142 (38%), Positives = 86/142 (60%)
Query: 204 GFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYG 263
GFA+ DV H++LP+ T+V V +G VTR+ ++ + D++ ARAKG+ ++ V
Sbjct: 4 GFAHVLDVAHHLVLPVVTLVAVEYGQTLLVTRSALLDEMGSDYLTTARAKGLRDDLVRRR 63
Query: 264 HALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYIS 323
HA+ A P +T+ L ++ G IL E+VF+WPG+G L++ A+ +L L+ G ++
Sbjct: 64 HAVPNALLPTVTLVFVNLGRTVAGVILVETVFSWPGLGGLFYQALSVPDLPLVQGLFFVF 123
Query: 324 VALYLIGVLLADLAYGFLDPRV 345
A ++ LADL Y LDPRV
Sbjct: 124 AAAVILMNTLADLLYPMLDPRV 145
>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
(AE000630) oligopeptide ABC transporter, permease
protein (oppB) [Helicobacter pylori 26695]
Length = 348
Score = 107 bits (265), Expect = 2e-22
Identities = 83/348 (23%), Positives = 157/348 (44%), Gaps = 15/348 (4%)
Query: 7 LAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHAL 66
+AY L +++ + +++I F + Q + E+Q + K +
Sbjct: 2 IAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRA 61
Query: 67 EEWKKREY-DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
+ + + + L K YG D+P R + KK + DFG+ + + V +I +P
Sbjct: 62 SQGLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGE---SFYRQIKVIDLIKEKLP 118
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
++ L ++L++ + I LG+ A++ D SV +V +IP + F ++LI+ F+
Sbjct: 119 VSISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFA 178
Query: 186 -------FKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIM 238
F L L S S+ + D L H+ LP+ I F + +N
Sbjct: 179 GGNYWHWFPLKGLVSDNFESL---SALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSF 235
Query: 239 IGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSL-GGAILTESVFNW 297
+ + + ++++A+AKG ++ Y H R A ++ LG ++L E VF+
Sbjct: 236 LDEMGKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSL 295
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
G+G L + +I + ++ GS YI L L+ L++DL +DPR+
Sbjct: 296 DGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
Length = 493
Score = 107 bits (265), Expect = 2e-22
Identities = 76/268 (28%), Positives = 134/268 (49%), Gaps = 26/268 (9%)
Query: 97 KTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIML----GLKAAQK 152
+ + LDFG +R+ K + + + + S++ M +G +L G+ A K
Sbjct: 230 RVLRLDFGTLRN------DAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALK 283
Query: 153 AGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNL--------LPSGGMTSIPPKTG 204
D L+ ++ SIP+ F + +L +F +N +P G+ S PP+
Sbjct: 284 RNRWIDHSLNFIFLILFSIPV--FVAVPWILDNFVINKTIPFTTIPMPYSGLRS-PPEVF 340
Query: 205 FAYYT-----DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENK 259
T D++ H LP + + + + ++R+I + VL +DFI AA+A+G+
Sbjct: 341 NELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFD 400
Query: 260 VIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGS 319
++Y H + AA I+T +L LGGA++ E++FN G G ++ AI + N+++ S
Sbjct: 401 ILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFS 460
Query: 320 TYISVALYLIGVLLADLAYGFLDPRVKV 347
+ AL L+G LL D+ Y LDPRV++
Sbjct: 461 VLVGSALSLVGYLLGDICYVLLDPRVQL 488
>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 314
Score = 107 bits (265), Expect = 2e-22
Identities = 75/272 (27%), Positives = 137/272 (49%), Gaps = 20/272 (7%)
Query: 77 LLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASL 136
L K YGLD+P + + + K + LDFG+ S I+ + +V II A+P + +L +
Sbjct: 51 LNKRYGLDKPLFTQYLIYLKCLLTLDFGE--SLIYKDRTVIGIITTALPSSAILGLESLC 108
Query: 137 IVMFLGIMLGLKAAQKAGGLFDRGLSVF--AMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
+ +F GI LG+ AA G G ++F +++ S+P + G L +F+ K +LLP
Sbjct: 109 LALFGGITLGILAAFYKRGC---GRTIFFSSIIQISVPAFVIGAFLQYIFAIKYSLLP-- 163
Query: 195 GMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
A + D H +LP + +T + L++D+++ A AKG
Sbjct: 164 ----------IACWGD-FSHTLLPSIALAIAPMAFITQLTYASVSASLKKDYVLLAYAKG 212
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELN 314
+ KV+ H L A P+I+ + F + + G E++F PG+G+ + +I+Q +
Sbjct: 213 LSPLKVLIKHVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYP 272
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ +G + A +++ LL DL ++DP+++
Sbjct: 273 MTLGLSVFYGAFFMLISLLCDLLQAWIDPQIR 304
>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 493
Score = 107 bits (265), Expect = 2e-22
Identities = 76/268 (28%), Positives = 134/268 (49%), Gaps = 26/268 (9%)
Query: 97 KTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIML----GLKAAQK 152
+ + LDFG +R+ K + + + + S++ M +G +L G+ A K
Sbjct: 230 RVLRLDFGTLRN------DAHKTVISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALK 283
Query: 153 AGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNL--------LPSGGMTSIPPKTG 204
D L+ ++ SIP+ F + +L +F +N +P G+ S PP+
Sbjct: 284 RNRWIDHSLNFIFLILFSIPV--FVAVPWILDNFVINKTIPFTTIPMPYSGLRS-PPEVF 340
Query: 205 FAYYT-----DVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENK 259
T D++ H LP + + + + ++R+I + VL +DFI AA+A+G+
Sbjct: 341 NELSTLGRIFDLVSHGFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFD 400
Query: 260 VIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGS 319
++Y H + AA I+T +L LGGA++ E++FN G G ++ AI + N+++ S
Sbjct: 401 ILYKHVGKNAAVSIVTSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFS 460
Query: 320 TYISVALYLIGVLLADLAYGFLDPRVKV 347
+ AL L+G LL D+ Y LDPRV++
Sbjct: 461 VLVGSALSLVGYLLGDICYVLLDPRVQL 488
>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
>gi|628767|pir||S39595 NikB protein - Escherichia coli
>gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
coli]
Length = 314
Score = 107 bits (264), Expect = 2e-22
Identities = 74/265 (27%), Positives = 128/265 (47%), Gaps = 16/265 (6%)
Query: 82 GLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFL 141
GLD+P +V+ K + LDFG + V + +P T+ L A ++++
Sbjct: 59 GLDQPLYVQYGTWLWKALHLDFG---ISFASQRPVLDDMLNFLPATLELAGAALVLILLT 115
Query: 142 GIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPP 201
+ LG+ AA+ L D + A + S+P +W +L++ FS L LP+ G
Sbjct: 116 SVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGG--- 172
Query: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
+H+ILP +I F+S A + R M+ V + + AR +G+ + +
Sbjct: 173 ----------WQHIILPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLNDKQTE 222
Query: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
H LR A+ P+IT + +GG ++ E++F WPG+GR AI + +I T
Sbjct: 223 RRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTL 282
Query: 322 ISVALYLIGVLLADLAYGFLDPRVK 346
+ V ++++ L+ DL LDPR++
Sbjct: 283 MMVVVFVVCNLIVDLLNAALDPRIR 307
>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
>gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
nickel, membrane protein [Escherichia coli K12]
Length = 314
Score = 107 bits (264), Expect = 2e-22
Identities = 74/265 (27%), Positives = 128/265 (47%), Gaps = 16/265 (6%)
Query: 82 GLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFL 141
GLD+P +V+ K + LDFG + V + +P T+ L A ++++
Sbjct: 59 GLDQPLYVQYGTWLWKALHLDFG---ISFASQRPVLDDMLNFLPATLELAGAALVLILLT 115
Query: 142 GIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSIPP 201
+ LG+ AA+ L D + A + S+P +W +L++ FS L LP+ G
Sbjct: 116 SVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMGYGG--- 172
Query: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
+H+ILP +I F+S A + R M+ V + + AR +G+ + +
Sbjct: 173 ----------WQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLNDKQTE 222
Query: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
H LR A+ P+IT + +GG ++ E++F WPG+GR AI + +I T
Sbjct: 223 RRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTL 282
Query: 322 ISVALYLIGVLLADLAYGFLDPRVK 346
+ V ++++ L+ DL LDPR++
Sbjct: 283 MMVVVFVVCNLIVDLLNAALDPRIR 307
>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 326
Score = 107 bits (264), Expect = 2e-22
Identities = 75/272 (27%), Positives = 139/272 (50%), Gaps = 4/272 (1%)
Query: 75 DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTA 134
D L ++ GLD+ +R + K L GD+ + V +I +P T+ L TA
Sbjct: 58 DNLRRSLGLDQALPIRYL---KWLWSLLQGDLGYSFTSRSPVIDLIGQRLPTTLWLMGTA 114
Query: 135 SLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
LI + + I LG+ AA G ++ +S +++ S+P + G++ IL+FS +L LP
Sbjct: 115 YLISLAIAIPLGVTAALYRGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWLPFI 174
Query: 195 GMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
+++ + + T + + +++P+ +VF R+ + L +++I A AKG
Sbjct: 175 YDSTLTVDSMASLGTQI-RQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKG 233
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELN 314
+ ++ H L+ A+ P+IT+ + GA++TE VF PG+G L +I + +
Sbjct: 234 LGTWGMLKNHLLKNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTP 293
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
++M T++ L + LADL Y +DPR++
Sbjct: 294 VVMAVTFLYAVLIVFFSSLADLIYQLVDPRIR 325
>gb|AAC43494.1| (U35439) similar to YejB of Escherichia coli, Swiss-Prot Accession
Number P33914 [Rhodobacter sphaeroides]
Length = 275
Score = 106 bits (263), Expect = 3e-22
Identities = 76/271 (28%), Positives = 135/271 (49%), Gaps = 27/271 (9%)
Query: 76 RLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTAS 135
+L K +G D+P R +D + DFG+ F SV ++ +P ++ L ++
Sbjct: 17 QLEKQFGFDKPPLERFLDMMWNYVRFDFGE---SYFRSISVVDLVKEKMPVSISLGLWST 73
Query: 136 LIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS-------FKL 188
LI + I LG++ A + G FD S +V +IP + F ++L++LFS F L
Sbjct: 74 LIAYLVSIPLGIRKAVRDGSSFDTWTSGAIIVAYAIPGFLFAILLLVLFSGGSYWQWFPL 133
Query: 189 NLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIM 248
L S S+ P A D H+ LP+ +F +T+N + +++ ++M
Sbjct: 134 RGLTSDNWDSLSPLGKVA---DYFWHITLPVVASTISAFATLTLLTKNSFLEEIRKQYVM 190
Query: 249 AARAKGVPENKVIYGHALR------AAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
ARAKG+ E +V+YGH R A+ P + +++F GG ++ E++F+ G+GR
Sbjct: 191 TARAKGLAEGRVLYGHVFRNAMLIVIASFPSVFVSVF-----FGGRLIIETIFSLDGLGR 245
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLL 333
L + A + +I G+ ++ L+G+L+
Sbjct: 246 LGFEAAVARDYPVIFGTLFV---FGLLGLLM 273
>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 106 bits (263), Expect = 3e-22
Identities = 83/348 (23%), Positives = 157/348 (44%), Gaps = 15/348 (4%)
Query: 7 LAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHAL 66
+AY L +++ + +++I F + Q + E+Q + K +
Sbjct: 2 IAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRA 61
Query: 67 EEWKKREY-DRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
+ + + + L K YG D+P R + KK + DFG+ + + V +I +P
Sbjct: 62 SQGLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGE---SFYRQIKVIDLIKEKLP 118
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
++ L ++L++ + I LG+ A++ D SV +V +IP + F ++LI+ F+
Sbjct: 119 VSISLGFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFA 178
Query: 186 -------FKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIM 238
F L L S S+ + D L H+ LP+ I F + +N
Sbjct: 179 GGNYWHWFPLKGLVSDNFESL---SALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSF 235
Query: 239 IGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSL-GGAILTESVFNW 297
+ + + ++++A+AKG ++ Y H R A ++ LG ++L E VF+
Sbjct: 236 LDEMGKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSL 295
Query: 298 PGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRV 345
G+G L + +I + ++ GS YI L L+ L++DL +DPR+
Sbjct: 296 DGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRI 343
>pir||G81668 peptide ABC transporter, permease protein, probable TC0764
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190789|gb|AAF39567.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 492
Score = 106 bits (263), Expect = 3e-22
Identities = 86/326 (26%), Positives = 158/326 (48%), Gaps = 23/326 (7%)
Query: 42 QEQINMRV-RTDPELQKLAKSDP-----HALEEWKKRE--YDRLLKAYGLDRPFWV--RV 91
Q + N +V +++ EL +L D L W ++E D+L++ L R F++ R
Sbjct: 165 QREYNQKVSKSNAELVRLLNEDDIEVKVAGLRAWVEKEGGRDKLMRG-DLWRIFFLETRF 223
Query: 92 IDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQ 151
+ + LDFG +R+ +T V ++I + +++L ++V L + G+ A
Sbjct: 224 AKYLSRIIRLDFGTLRNDCH-KTVVSEVIK-RLGSSLVLSLLPMIVVFVLCQVFGMIMAV 281
Query: 152 KAGGLFDRGLSVFAMVTTSIPMW----WF--GMILILLFSFKLNLLPSGGMTSIPP---- 201
D L+ ++ SIP++ W +L F +P G+ S P
Sbjct: 282 NKNRWIDHLLNFLFLILFSIPVFVAVPWIIDNFVLNKTVPFTSISMPYSGLCSSPEVFKD 341
Query: 202 KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVI 261
T D++ H LP + + +F + ++R + + VL ED I A RA+G+ + ++
Sbjct: 342 MTSLEKLIDIVLHSFLPFCAVSYGAFAAQSRLSRAVFLEVLGEDHIPALRARGISQYDIL 401
Query: 262 YGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTY 321
H + +A +IT +L LGGA++ E++F+ G G+ ++ AI + N++M S
Sbjct: 402 IRHVGKNSAATLITSLASSLSALLGGALVVETLFDIDGFGKFFYQAILNRDHNVVMFSVI 461
Query: 322 ISVALYLIGVLLADLAYGFLDPRVKV 347
+ + LIG L+ D+ Y LDPRV++
Sbjct: 462 MGSVISLIGYLIGDICYVLLDPRVQL 487
>emb|CAA20250.1| (AL031231) putative peptide transport system integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 229
Score = 106 bits (262), Expect = 4e-22
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 81 YGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVMF 140
+GLD P W + D K + D G S F V KI A+P T++L TA ++
Sbjct: 52 FGLDLPLWEQFTDYCGKALSGDLGT--SYQFHAPVVDKITE-ALPNTLLLTGTAFVLYTA 108
Query: 141 LGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLN----LLPSGGM 196
LG LG ++A + GGL DR + A+ SIP +W G++LI++ S ++ L P+GGM
Sbjct: 109 LGAFLGTRSAWRHGGLGDRLNTGLALTLYSIPSFWLGLLLIIVLSVGVDPIPGLFPTGGM 168
Query: 197 TSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVP 256
S + GFA+ DV H++LP+ T+V V +G VTR+ ++ + D++ ARAKG+
Sbjct: 169 ES-GREEGFAHVLDVAHHLVLPVVTLVAVEYGQTLLVTRSALLDEMGSDYLTTARAKGLR 227
Query: 257 EN 258
++
Sbjct: 228 DD 229
>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 315
Score = 105 bits (259), Expect = 1e-21
Identities = 76/275 (27%), Positives = 128/275 (45%), Gaps = 15/275 (5%)
Query: 75 DRLLKAYGLDRPFWVRVIDRTKKTMMLDFG---DVRSPIFGETSVRKIIAVAIPRTVMLF 131
+ L GLDRP + + + LD G + +P V +I+ I T++
Sbjct: 50 EELRAELGLDRPLYEQFASFVSDILHLDLGYSYHLHAP------VAEILLDRIGWTLLFV 103
Query: 132 TTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLL 191
++ +I F G +LG A K R + +V + P ++ ++ + +FSF+L L
Sbjct: 104 GSSVIIGAFAGSLLGALAGWKPEKRTSRVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLF 163
Query: 192 PSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAAR 251
PS G P +L H+ LP+ + S V R +I +E + + AR
Sbjct: 164 PSKGFYDAPE------IGSILHHLFLPICVMSVFSASRNFLVMRGSVIQEKKELYALYAR 217
Query: 252 AKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQM 311
AKG+ + V++ H L+ ++ PIIT+ GA+ E +F+ GMG L + AI
Sbjct: 218 AKGLNDTGVLFRHVLKNSSLPIITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGK 277
Query: 312 ELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ L+ G+ + L+ +LADL Y +DPRV+
Sbjct: 278 DYPLLQGAFLVISLTALLANMLADLLYALIDPRVR 312
>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 328
Score = 105 bits (259), Expect = 1e-21
Identities = 88/345 (25%), Positives = 157/345 (45%), Gaps = 26/345 (7%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
Y+A R+ A +L +++ V I+ D L + + M +R E D A
Sbjct: 4 YIAKRVLYAIPLLFVISIVSFIIIELPPGDYLTTYV-----MTLRQSGET-----IDQAA 53
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
LE KKR YGLD+P VR ++ GD E V ++ +
Sbjct: 54 LEVLKKR--------YGLDKPVIVRYFYWIGN--IITKGDFGYSFMWEKPVSDLLNQRVW 103
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
T+++ ++ G ++G+ + + D +V + + P + +IL L F
Sbjct: 104 WTILISVLSTAFAWVFGFLIGVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALIL-LWFM 162
Query: 186 FKLNLLPSGGMTSIPPKTG----FAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGV 241
F + GG+ S P G +A + D+LKH+ +P+ + S G V R ++
Sbjct: 163 FVTTGVSLGGLFS-PEYAGAPWSWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDE 221
Query: 242 LQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMG 301
+ + +++AARA+GVPE ++++ + LR A P + + L + GA++T V N P +G
Sbjct: 222 INKPYVVAARARGVPERELVWKYPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVG 281
Query: 302 RLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
L A+ ++ L I +IG L++D+ +LDPR++
Sbjct: 282 TLLLDALTSQDMYLAGSLVLILSVFTIIGTLISDILLAWLDPRIR 326
>sp|P47323|OPPB_MYCGE OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1361737|pir||E64208 oligopeptide transport system
permease protein oppB homolog - Mycoplasma genitalium
>gi|1045754|gb|AAC71295.1| (U39688) oligopeptide ABC
transporter, permease protein (oppB) [Mycoplasma
genitalium]
Length = 407
Score = 103 bits (254), Expect = 4e-21
Identities = 79/354 (22%), Positives = 153/354 (42%), Gaps = 40/354 (11%)
Query: 5 RYLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPH 64
+Y+ RL A + + IV +V L + L ++ I +LQ+ +DP
Sbjct: 3 KYILKRLGLAVVAMFIVMSIVFFLVNATGNVPLSATSARDI---AAVQAQLQEFGFNDPI 59
Query: 65 ALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAI 124
+ ++ +W ++ + + + + I GE I+ +
Sbjct: 60 IVRYFR----------------YWAKLFSFQADALGIYYANPNQTI-GE-----IVFARV 97
Query: 125 PRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLF 184
P T+ + + LI LGI LG+ + G D ++V ++ SIP + G
Sbjct: 98 PNTLYVVLISFLIGSLLGIFLGMVSGLNRGKFLDAAINVLVVLFVSIPSFVVG------- 150
Query: 185 SFKLNLLPSGGMTSIPPK-----TGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMI 239
L LL G ++PP+ F + L I+P+ ++VF S + + RN ++
Sbjct: 151 ---LGLLKLAGFLNLPPRFINFDDAFFSFDRFLLASIIPILSLVFYSSAAFTYRIRNEVV 207
Query: 240 GVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPG 299
V+ +D+I A++KG+ V H R + P I + +F + G+ G + ES+F G
Sbjct: 208 EVMNQDYIKTAKSKGLGMFAVARYHIFRNSIIPSIPLFVFGISGAFSGGFIIESLFGVQG 267
Query: 300 MGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQRL 353
+ R+ ++Q E N++M + + L+ + + Y +DPR+++ S +
Sbjct: 268 VSRILIDSVQVNETNMVMFNILFIQGIPLLASVFIEFIYVLVDPRIRIANSSNV 321
>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 313
Score = 103 bits (254), Expect = 4e-21
Identities = 76/272 (27%), Positives = 143/272 (51%), Gaps = 20/272 (7%)
Query: 77 LLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASL 136
L YGLD+P + + + K + LDFG+ S I+ + +V IIA A+P + +L +
Sbjct: 51 LKNRYGLDKPLFTQYLIYLKCLLTLDFGE--SLIYKDRTVISIIAAALPSSAILGLESLC 108
Query: 137 IVMFLGIMLGLKAA--QKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
+ +F GI LG+ AA +K+ G R + +++ S+P + G L +F+ K + LP
Sbjct: 109 LSLFGGITLGILAAFYKKSCG---RTIFFSSVIQISVPAFVIGAFLQYVFAIKYSCLP-- 163
Query: 195 GMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
I F++ +L + L +T + F++ A V+ N L++D+++ A AKG
Sbjct: 164 ----IACWGNFSH--TLLPSIALAITPMAFITQLTCASVSAN-----LKKDYVLLAYAKG 212
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELN 314
+ KV+ H L A P+I+ + F + + G E++F PG+G+ + +I+Q +
Sbjct: 213 LSPFKVLIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYP 272
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ +G + A +++ L DL ++DP+++
Sbjct: 273 ITLGLSVFYGAFFMLTSLCCDLLQAWIDPQIR 304
>pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 320
Score = 102 bits (252), Expect = 6e-21
Identities = 68/245 (27%), Positives = 111/245 (44%), Gaps = 18/245 (7%)
Query: 120 IAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMI 179
+ V P T+ L T A ++ + +GI +G A + G D +S +M S P++W ++
Sbjct: 69 LLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYSAPIFWLALM 128
Query: 180 LILLFSFKLNLLPSGG----MTSIPPKTGFAYYT--------------DVLKHMILPLTT 221
+I+ FS + P G + I TGFA V++H+ LP
Sbjct: 129 MIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLV 188
Query: 222 IVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTL 281
+ R + V+ +++I AA+ KG+ +++ H LR A PP+I L
Sbjct: 189 LALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQL 248
Query: 282 LGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFL 341
L AI+TES+FNWPG+GR A+ + I + L L +L+DL
Sbjct: 249 SSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANILSDLIGAAA 308
Query: 342 DPRVK 346
+P V+
Sbjct: 309 NPLVR 313
>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
oligopeptide transport protein homolog ophB -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215732|gb|AAC44509.1| (AF242881) ophB
[Agrobacterium tumefaciens]
Length = 334
Score = 101 bits (249), Expect = 1e-20
Identities = 72/285 (25%), Positives = 136/285 (47%), Gaps = 16/285 (5%)
Query: 63 PHALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAV 122
P AL E ++R GL+ P VR + + GD+ S + SV I
Sbjct: 64 PAALAELRER--------LGLNEPLIVRYMSWLNAFV---HGDLGSSLINGRSVADSIGA 112
Query: 123 AIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILIL 182
+ T+ L + +L+ + L + LG+ + + G + DR +++ ++P ++ G +LI
Sbjct: 113 RLGNTLFLAASVALVAVPLAVFLGVLSVRYRGRVLDRTIALVTRTFVALPEFFIGYLLIY 172
Query: 183 LFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVL 242
+ S L S +++ + GFA D + + LP T+VFV G + R ++ V+
Sbjct: 173 ILSVSLGWFASS--STVFARMGFA---DRVVAIALPCLTLVFVVTGHITTMVRASVLDVM 227
Query: 243 QEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGR 302
+ FI A KGV V++ HAL A PII + + L + G ++ E +F +PG+G+
Sbjct: 228 ERPFIEMAALKGVSHGAVVWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQ 287
Query: 303 LYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
++ + ++ + + +Y+ L AD+ +PR+++
Sbjct: 288 YMVDSVVNRHVPVVQATALLFAGVYIGLNLCADVLSVLANPRLRL 332
>pir||C82876 oligopeptide transport system permease protein UU562 [imported] -
Ureaplasma urealyticum
>gi|6899568|gb|AAF30975.1|AE002154_11 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 377
Score = 101 bits (249), Expect = 1e-20
Identities = 77/279 (27%), Positives = 129/279 (45%), Gaps = 29/279 (10%)
Query: 77 LLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASL 136
+L YGLDRP VR ++ +FG V + I + I + + + L
Sbjct: 119 ILAQYGLDRPIGVRYVNYLANIFRGEFG-VSTSIRPGVEINSFIWSRYLVSFAVGIFSVL 177
Query: 137 IVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILL-------FSFKLN 189
+ + +GI LG+ +K GG+ D +V V +++P FG+IL+L+ F+F +N
Sbjct: 178 LTLVIGIPLGIFVGRKPGGILDSVSTVIISVISAVPSLVFGLILLLIGKEVGLPFTFDIN 237
Query: 190 LLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMA 249
+ T +L + L L +I+ + + V N + + F
Sbjct: 238 ----------------NFVTYILPGLALSLGSIIV--YVQYIKVEMNRELNSMHAKF--- 276
Query: 250 ARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQ 309
A KG N+ ++ HAL+ + PI T F +LGS GA+ E +F PG G L++ AI
Sbjct: 277 AYLKGATVNRFVWLHALKPSLFPIATFFPFVILGSFVGALFIEQIFQIPGSGSLFFEAII 336
Query: 310 QMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKVG 348
+ N+I+ I + +IG + D Y +DPR++ G
Sbjct: 337 SKDYNVILLLVIIYSLITIIGYTIRDALYQIIDPRIRRG 375
>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
Length = 309
Score = 101 bits (248), Expect = 2e-20
Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 16/294 (5%)
Query: 55 LQKLAKSDP-HALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGE 113
L KL P E+ + + +L+ YGL+ P V+ D G S +
Sbjct: 26 LMKLLPGSPLKNQEKLSPAQKEIILEKYGLNDPVPVQYARYLGNLAKGDLGV--SFQYDN 83
Query: 114 TSVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPM 173
V +I I + L A ++ F+G++LG+ AA + D G ++ +++ S+P
Sbjct: 84 RPVTDMIVDRIGPSAQLGLQAIILGTFIGLILGIVAALRNNTWVDYGATIISVLGMSVPS 143
Query: 174 WWFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWV 233
+ F +L KL P A++ + ++P + A
Sbjct: 144 FVFAALLQYFVGVKLGWFP------------VAFWKGP-EFTVMPTIALSMAVIATIARF 190
Query: 234 TRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTES 293
+R +I V+Q D+I+ A+AKG+ + +I HALR A P++T+ + + G ++ E
Sbjct: 191 SRAELIEVMQADYILTAKAKGISQGVIIVKHALRNALIPVVTILGPMVAALITGTLVIEQ 250
Query: 294 VFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
++ PG+G + +I + +IMG+T A++++ + + D+ YG +DPR+++
Sbjct: 251 IYAVPGLGEQFVKSITVNDYTVIMGTTIFYSAIFILVIFIVDILYGIIDPRIRL 304
>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
[Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
(AB039932) hypothetical ABC-transporter gene~similar to
agaB gene [Agrobacterium rhizogenes]
>gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
ABC-transporter gene~similar to agaB gene [Agrobacterium
rhizogenes]
Length = 319
Score = 100 bits (247), Expect = 2e-20
Identities = 72/233 (30%), Positives = 115/233 (48%), Gaps = 17/233 (7%)
Query: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
V +I +P T+ L A +I + + + LGL G D+ + S P +W
Sbjct: 101 VLDLILGTLPMTLQLAAVALVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFW 160
Query: 176 FGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTR 235
G++L L S KL +LP+ G GF Y ILP ++ V + T
Sbjct: 161 LGIVLTLFLSVKLRVLPAIGYN------GFEY-------TILP-AIVLAVEIAPFILRTL 206
Query: 236 NIMIG-VLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294
+ + VL+EDFI A +G+ + I+ H L +A P+I + L LGG ++ E +
Sbjct: 207 TVSVAQVLREDFIQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFI 266
Query: 295 FNWPGMGRLYWVAIQQMELNLIMG-STYISVALYLIGVLLADLAYGFLDPRVK 346
F++PG+G L A+QQ + LI G + +ISV +I +L+ DL +DPR++
Sbjct: 267 FDYPGLGLLTINAVQQRDFPLIQGVAIFISVMFVVINILV-DLIAMTIDPRLE 318
>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 328
Score = 99.1 bits (243), Expect = 7e-20
Identities = 76/282 (26%), Positives = 130/282 (45%), Gaps = 8/282 (2%)
Query: 69 WKKREYDRLLKAYGLDRPFWVRVIDR-TKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRT 127
+ K + + GLD+P W + ++ T LDFG V II + T
Sbjct: 49 FSKETVANITRQLGLDQPAWKQYLNWITGVVTRLDFG---YSFASGAPVTSIIGERLGWT 105
Query: 128 VMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFK 187
V + + + + LG+ A G+ + + V +IP + ++L++L +
Sbjct: 106 VFIAALTLALTWLIAVPLGIYTAFNRYGIPAQIANFLGYVGLAIPDFLAALLLVVLVR-Q 164
Query: 188 LNLLPSGGM---TSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQE 244
L GG+ I FA D+L H+ +P+ + G R + VL +
Sbjct: 165 LGGTNVGGLFRPDMIDAPWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQ 224
Query: 245 DFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLY 304
D+I A+AKG+P+ +VI+ HA+R A P+I++ +L + G I+ V + P +G L
Sbjct: 225 DYIRTAKAKGLPQGRVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLL 284
Query: 305 WVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ ++ + M +S L LIG LL+DLA + DPRV+
Sbjct: 285 YDSLLNKDQYTAMTLLMLSAFLLLIGNLLSDLALAWADPRVR 326
>sp|P75554|OPPB_MYCPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|2146483|pir||S73942 oligopeptide transport system
permease protein oppB - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674318|gb|AAB96264.1| (AE000058)
oligopeptide transport system permease protein OppB
[Mycoplasma pneumoniae]
Length = 389
Score = 98.7 bits (242), Expect = 9e-20
Identities = 61/240 (25%), Positives = 118/240 (48%), Gaps = 19/240 (7%)
Query: 115 SVRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMW 174
++ +I+ +P T+ + + I LGI+ G+ + G L D ++V ++ SIP +
Sbjct: 70 TIDQIVFGRVPNTLYVVLISFFIGSLLGIIFGMISGLFRGKLIDAVINVLVVLFVSIPSF 129
Query: 175 WFGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDV-------LKHMILPLTTIVFVSF 227
G L LL + G+ +PP+ F + D L I+P+ ++VF +
Sbjct: 130 VVG----------LGLLKAAGLFRLPPR--FINFDDANFNFGNFLLASIIPILSLVFYTS 177
Query: 228 GGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGG 287
+ + RN ++ V+ +D+I AR+KG+ V H R + P + + +F + G+ G
Sbjct: 178 AAFTYRVRNEVVEVMNQDYIKTARSKGLSTFAVALYHIFRNSIIPSVPLFVFGISGAFSG 237
Query: 288 AILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+ ES+F G+ R+ ++Q E NL+M + + L+ + +L Y +DPR+++
Sbjct: 238 GFIIESLFGVQGVSRILIDSVQSNETNLVMFNIMFIQGIPLLASVFIELIYVLVDPRIRI 297
>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 327
Score = 97.1 bits (238), Expect = 3e-19
Identities = 85/347 (24%), Positives = 163/347 (46%), Gaps = 31/347 (8%)
Query: 6 YLAYRLTNAFIVLLIVTFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDPHA 65
Y+ RL AFI L I++ + ++ D L S I + ++ E +A
Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGDFLTSYIAQ-----LKVSGEDVDIAT----- 53
Query: 66 LEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIP 125
+ L K YGLD+P +V+ + + DFG S + V +++ +
Sbjct: 54 --------IEALKKQYGLDKPIYVQYLKWLWGILHGDFGYSFS---WKKPVNELLWNRLG 102
Query: 126 RTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFS 185
TV++ T + + G ++G+ +A + D ++ + ++P F + LIL++
Sbjct: 103 VTVLVATLSLIFSWIFGFIIGMYSAVHPYSIGDYLATILGYIGLAVPN--FLLALILMWG 160
Query: 186 -FKLNLLPSGGMTSIP----PKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIG 240
+ L + G+ S+ P T + D+L H+ +P+ + G R ++
Sbjct: 161 IYSLTGINLSGLHSVKYLNTPMT-IDKFLDILNHLWIPVLVLGTSGMAGLIRTLRANLLD 219
Query: 241 VLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGM 300
L + ++ AA +KG+PENKV + + LR A P I+ ++L GA +T V N P +
Sbjct: 220 ELHKPYVEAALSKGLPENKVFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSV 279
Query: 301 GRLYWVAIQQMELNLIMGSTYISVALY-LIGVLLADLAYGFLDPRVK 346
G L A++ ++ L GS + ++ + +IG L++D+ ++DPR++
Sbjct: 280 GPLLLNALKNQDMYL-AGSLVMFLSFFTVIGTLISDILLAWVDPRIR 325
>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 314
Score = 96.0 bits (235), Expect = 6e-19
Identities = 72/272 (26%), Positives = 126/272 (45%), Gaps = 20/272 (7%)
Query: 77 LLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFTTASL 136
L YGLD+P + + LDFG+ S ++ + V II+ A P + +L +
Sbjct: 51 LKSRYGLDKPLYQQYTQYLHSIAKLDFGN--SLVYKDRKVTNIISTAFPISAILGLQSLF 108
Query: 137 IVMFLGIMLGLKAA--QKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
+ + GI LG AA +K + G S+ + SIP + F +L +F+ K+ LLP
Sbjct: 109 LSIGGGIALGTIAALKKKKQRRYILGASILQI---SIPAFIFATLLQYVFAVKIPLLPIA 165
Query: 195 GMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
S H ILP + +T + + L +D+++ A AKG
Sbjct: 166 CWGSFT-------------HTILPTLALAVTPMAFIIQLTYSSVSAALNKDYVLLAYAKG 212
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELN 314
+ KV+ H L A P I+ + F + G E++F PG+G+ + +I+Q +
Sbjct: 213 LSPLKVVIKHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYP 272
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ +G + L+++ LL+DL +DP+++
Sbjct: 273 VALGLSVFYGTLFMLSSLLSDLIQSIIDPQIR 304
>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
Length = 309
Score = 94.8 bits (232), Expect = 1e-18
Identities = 62/232 (26%), Positives = 112/232 (47%), Gaps = 13/232 (5%)
Query: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
V +I++ I +V L A + GI+LG+ AA D + A++ S+P +
Sbjct: 86 VSEILSALIGPSVQLALEAMAFGVIFGILLGVIAAMYQNRWPDYTSTFIAILGKSVPSFV 145
Query: 176 FGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTR 235
F +L KL + P G + + D ILP + A R
Sbjct: 146 FATVLQYWLGAKLQIFPVAG---------WGTFADT----ILPAFALAMFPLATAARFMR 192
Query: 236 NIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVF 295
+I V D+++ A+AKG +V HA+R A P+IT+ + + G+++ E+++
Sbjct: 193 TELIDVFASDYVLLAKAKGNSRTEVAVKHAIRNALIPLITVLGPLSVALMTGSLVIENIY 252
Query: 296 NWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
+ PG+G + +IQ + +IMG+T + + + +L+ D+ YG +DPR++V
Sbjct: 253 SIPGIGSQFVSSIQTNDYPVIMGTTILFAVMLVFVILVVDILYGLIDPRIRV 304
>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 500
Score = 90.1 bits (220), Expect = 4e-17
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Query: 138 VMF---LGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSG 194
VMF +G+ LGL A+ FDR F+ T + + + +I + F G
Sbjct: 292 VMFSHIVGLPLGLFMARFKNTYFDR----FSTATMTFMLALPSIAVIYVVRFL------G 341
Query: 195 GMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKG 254
GM +P +D K ILP + ++ R ++ + D++ AR+KG
Sbjct: 342 GMVGLPDSFPMLGASDP-KSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG 400
Query: 255 VPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELN 314
+ E+++ GH + A PI++ +++ ++GGA LTE+VF +PGMG++ +I+ +
Sbjct: 401 LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNS 460
Query: 315 LIMGSTYISVALYLIGVLLADLAYGFLDPRVKVGVSQ 351
+I+G T+I L ++ +LL D+ +DPR+K+ +
Sbjct: 461 MIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIKLSTKK 497
>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
solfataricus]
Length = 333
Score = 89.7 bits (219), Expect = 5e-17
Identities = 77/270 (28%), Positives = 129/270 (47%), Gaps = 13/270 (4%)
Query: 81 YGLDRPFWVRVIDRTKKTMMLDFG-DVRSPIFGETSVRKIIAVAIPRTVMLFTTASLIVM 139
YG ++P +V+ I + G D + E + +++ +P T++L +
Sbjct: 73 YGFNQPLYVQFIRYLYALFSFNLGYDFQHH---EYVINEVLQY-LPYTIILTLPPFIFQT 128
Query: 140 FLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLPSGGMTSI 199
L I++G AA K D +S + ++ +IP ++ +L ++F+ + +P G+ +
Sbjct: 129 LLAIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISGIQVL 188
Query: 200 PPKTGFAYYTDVLKHMILPLTTIVFV-SFGGWAWVTRNIMIGVLQEDFIMAARAKGVPEN 258
+LK LP VF+ F + RN M+ VL DF+ AR G+ E+
Sbjct: 189 HLND----IVSILKVYWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVKYARLSGLKES 244
Query: 259 KVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMG 318
V A R + P+IT T L LGG E +F PGMG L +A ++ + L+ G
Sbjct: 245 TV-RAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAATELNIPLLTG 303
Query: 319 STYISVALYLIGVLLA-DLAYGFLDPRVKV 347
S + + LY + VL A DL Y +DPR+K+
Sbjct: 304 SFFF-LTLYALVVLYAMDLIYPLVDPRIKL 332
>gb|AAC18097.1| (AF058302) membrane protein of putative ABC transporter
[Streptomyces roseofulvus]
Length = 323
Score = 89.3 bits (218), Expect = 6e-17
Identities = 87/341 (25%), Positives = 144/341 (41%), Gaps = 34/341 (9%)
Query: 5 RYLAYRLTNAFIVLLIV-TFVVSILFTKVADDMLRSSIQEQINMRVRTDPELQKLAKSDP 63
RYLA RL +V+ T ++L+ D +Q ++ D A DP
Sbjct: 4 RYLARRLGRVVLVVWAAYTLSFAVLYLLPGDP-----VQTMLSGAAGGDG-----AAVDP 53
Query: 64 HALEEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVA 123
H E RL GLDRP V+ + GD+ + I VR +A A
Sbjct: 54 H--------EAQRLRHTLGLDRPLAVQYTSMLGHALR---GDLGTSIRSGAPVRGQLAQA 102
Query: 124 IPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILL 183
+P T+ + A ++ + + + L L A R + + T++P +W G++L
Sbjct: 103 LPDTLSVALPALVLSVLVALCLALLGAWPRRRALRRAATALPSLGTAMPSFWLGLLLAQW 162
Query: 184 FSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQ 243
SF+ LLP+ G P T A T + LP+ ++ A V + L
Sbjct: 163 VSFRWGLLPATGGGRSPRATLLAALT-----LALPIGCVL-------AQVLGRGLRAALA 210
Query: 244 EDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRL 303
E + AR++G +++ ALR A+ + + L GA+L E+VF G+GRL
Sbjct: 211 EPYADVARSRGAGRARLLLARALRNASVAALALLGVVCGQLLAGAVLVETVFARGGIGRL 270
Query: 304 YWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPR 344
A+ +L ++ G ++ + + L+ DL L+PR
Sbjct: 271 AMDAVTYQDLPVVQGVVVLAALVAALVNLVVDLLLPLLEPR 311
>pir||F82377 ABC transporter, permease protein VCA1099 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658546|gb|AAF96991.1| (AE004435) ABC transporter,
permease protein [Vibrio cholerae]
Length = 318
Score = 86.6 bits (211), Expect = 4e-16
Identities = 57/221 (25%), Positives = 105/221 (46%), Gaps = 13/221 (5%)
Query: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
+++L A+L+ +F+ I +G+ ++ D + +++ + P++ G+ L++LF+
Sbjct: 103 SLLLAGAATLLSLFIAIPIGVYCGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFAL 162
Query: 187 KLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDF 246
+LN LP G K +ILP + + + RN VLQ +
Sbjct: 163 QLNWLPVAGFGHP-------------KFLILPALALALGMAAMSSRMIRNATAQVLQSPY 209
Query: 247 IMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWV 306
AR KG+ + HA R A P++ + + G ++ ES+F+WPG+G
Sbjct: 210 YAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQAVSLVEGIVMIESLFSWPGVGHALSH 269
Query: 307 AIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
AI Q ++ +I GS + L++ L DL LDPR+++
Sbjct: 270 AIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYALDPRLRL 310
>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 323
Score = 84.7 bits (206), Expect = 2e-15
Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 4/258 (1%)
Query: 73 EYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVMLFT 132
+Y R+ +GLD+P W R + + GD+ + V +I + L
Sbjct: 49 QYARIAARWGLDQPLWERFGHWFWRLLQ---GDMGYSMLFNMPVASVIRERFATSFALLA 105
Query: 133 TASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNLLP 192
A L+ LG+ LG A + D+ + + + +S+P +W M+ + L +LP
Sbjct: 106 GAWLLSGVLGVTLGFLAGRFLHRWPDKMICRISYLLSSLPTFWIAMLSGAVCR-PLAVLP 164
Query: 193 SGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARA 252
G A ++ L+H++LP+ + + G A TR + V++ +FI ARA
Sbjct: 165 VCCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARA 224
Query: 253 KGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQME 312
+G ++ LR A P + + +L +GGA+L E VF +PG+G+ A + +
Sbjct: 225 QGDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGD 284
Query: 313 LNLIMGSTYISVALYLIG 330
+ L+MG L G
Sbjct: 285 VPLLMGIVLFCTLLVFAG 302
>sp|P18793|AMIC_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMIC
>gi|98016|pir||S11150 amiC protein - Streptococcus
pneumoniae >gi|47344|emb|CAA35214.1| (X17337) AmiC
protein [Streptococcus pneumoniae]
Length = 498
Score = 81.1 bits (197), Expect = 2e-14
Identities = 40/132 (30%), Positives = 74/132 (55%)
Query: 216 ILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIIT 275
+LP + + G A R MI + +DF+ ARAKG+ E ++ H + A P+++
Sbjct: 361 VLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGLSEKEISNKHIFKNAMVPLVS 420
Query: 276 MTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLAD 335
++G +GGA LTE+VF +PGMG++ +++ ++++G +I + + LL D
Sbjct: 421 GIPAAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD 480
Query: 336 LAYGFLDPRVKV 347
+ +DPR+K+
Sbjct: 481 IWMTIIDPRIKL 492
>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 314
Score = 78.0 bits (189), Expect = 2e-13
Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 7/276 (2%)
Query: 71 KREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPRTVML 130
K R+ + GLD+P + K + D G S + GE SV K+I I T +L
Sbjct: 41 KEFVQRIEQNLGLDKPLLEQYKIWLFKALKGDLGV--SFLSGE-SVLKLIKERIFNTFIL 97
Query: 131 FTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSFKLNL 190
+A +++ L + L L D+ ++ A ++P + ++ +L+F +
Sbjct: 98 GFSALMLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKI 157
Query: 191 LPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTRNIMIGVLQEDFIMAA 250
LP G + I + F + L+H+ILP+ +V + + RN + + FI
Sbjct: 158 LPVMGSSDIGFEDDFL---NRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNL 214
Query: 251 RAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESVFNWPGMGRLYWVAIQQ 310
A+ + E K IY L+ + PI+ + L + G + ESVF + G+G L + +I
Sbjct: 215 YARALRE-KDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIF 273
Query: 311 MELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
+ +++ + SV L L+D+ L+PR++
Sbjct: 274 KDYPIVLALIFFSVLLAAFFTFLSDIVARILNPRLR 309
>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 328
Score = 75.7 bits (183), Expect = 8e-13
Identities = 55/235 (23%), Positives = 118/235 (49%), Gaps = 23/235 (9%)
Query: 116 VRKIIAVAIPRTVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWW 175
V +I+ P T+++ + ++ + + I LG+ AA++ D+ + V + ++ S+P ++
Sbjct: 92 VTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFF 151
Query: 176 FGMILILLFSFKLNLLPSGGMTSIPPKTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVTR 235
G+IL+ + + +N+ + +L ILP+ T+ S G A++ R
Sbjct: 152 IGIILLFIVTNLMNI-----------------DSVILSQFILPVITL---SLGMCAYIIR 191
Query: 236 NI---MIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTE 292
+ ++ +LQ + + A+R +G+ E ++ L+ PII + +L +GG ++ E
Sbjct: 192 LVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISLGSLIGGTVVIE 251
Query: 293 SVFNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVKV 347
++F+ PG+G L +I+ + +I G +I +ADL LDP+ ++
Sbjct: 252 NLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRL 306
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.143 0.430
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120865695
Number of Sequences: 2977
Number of extensions: 4752734
Number of successful extensions: 22639
Number of sequences better than 1.0e-10: 133
Number of HSP's better than 0.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 22314
Number of HSP's gapped (non-prelim): 140
length of query: 353
length of database: 189,106,746
effective HSP length: 52
effective length of query: 301
effective length of database: 157,985,422
effective search space: 47553612022
effective search space used: 47553612022
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)